Wall clock time and date at job start Wed Apr 1 2020 04:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99687 * 2 1 4 4 C 1.53005 * 109.47031 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47204 * 65.00256 * 4 3 2 6 6 C 1.36939 * 119.99529 * 270.00029 * 5 4 3 7 7 H 1.07998 * 119.99887 * 139.07359 * 6 5 4 8 8 C 1.38818 * 120.00087 * 319.06557 * 6 5 4 9 9 N 1.31613 * 119.99714 * 340.13710 * 8 6 5 10 10 Si 1.86799 * 119.99761 * 160.13549 * 8 6 5 11 11 H 1.48498 * 109.47194 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47154 * 120.00390 * 10 8 6 13 13 H 1.48499 * 109.46870 * 240.00253 * 10 8 6 14 14 C 1.46496 * 120.00225 * 89.99883 * 5 4 3 15 15 C 1.53045 * 109.45864 * 243.08258 * 14 5 4 16 16 C 1.53190 * 109.30937 * 178.61500 * 15 14 5 17 17 N 1.46924 * 108.77693 * 54.63546 * 16 15 14 18 18 C 1.34777 * 120.62830 * 126.37155 * 17 16 15 19 19 O 1.21553 * 120.00076 * 354.92217 * 18 17 16 20 20 C 1.47843 * 120.00053 * 174.65723 * 18 17 16 21 21 C 1.39560 * 120.55691 * 310.18443 * 20 18 17 22 22 N 1.31671 * 120.56333 * 179.76979 * 21 20 18 23 23 C 1.31953 * 121.87863 * 0.49671 * 22 21 20 24 24 C 1.38309 * 121.08377 * 359.76514 * 23 22 21 25 25 C 1.38395 * 119.30249 * 359.97438 * 24 23 22 26 26 C 1.50707 * 120.85439 * 179.97438 * 25 24 23 27 27 C 1.46921 * 118.73793 * 306.64147 * 17 16 15 28 28 C 1.52758 * 109.00917 * 53.31025 * 27 17 16 29 29 H 1.09006 * 109.46681 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46839 * 299.99395 * 1 2 3 31 31 H 1.08990 * 109.47398 * 59.99767 * 1 2 3 32 32 H 1.09002 * 109.47376 * 60.00572 * 3 2 1 33 33 H 1.08999 * 109.47490 * 299.99986 * 3 2 1 34 34 H 1.08998 * 109.46808 * 304.99937 * 4 3 2 35 35 H 1.09002 * 109.46703 * 185.00326 * 4 3 2 36 36 H 0.97004 * 119.99672 * 179.97438 * 9 8 6 37 37 H 1.08994 * 109.46056 * 3.05443 * 14 5 4 38 38 H 1.09001 * 109.49641 * 58.66792 * 15 14 5 39 39 H 1.09001 * 109.52206 * 298.58124 * 15 14 5 40 40 H 1.09008 * 109.58943 * 294.84636 * 16 15 14 41 41 H 1.09001 * 109.70333 * 174.49611 * 16 15 14 42 42 H 1.07996 * 119.71763 * 359.97438 * 21 20 18 43 43 H 1.08001 * 119.45941 * 179.74639 * 23 22 21 44 44 H 1.07996 * 120.35039 * 180.02562 * 24 23 22 45 45 H 1.08999 * 109.47000 * 270.12312 * 26 25 24 46 46 H 1.09000 * 109.46580 * 30.12220 * 26 25 24 47 47 H 1.09002 * 109.46494 * 150.11830 * 26 25 24 48 48 H 1.09004 * 109.58407 * 173.14510 * 27 17 16 49 49 H 1.08997 * 109.59033 * 293.56482 * 27 17 16 50 50 H 1.09004 * 109.56272 * 185.55024 * 28 27 17 51 51 H 1.09005 * 109.36115 * 65.49936 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5646 -1.2527 6 6 4.0968 -0.7968 -1.3368 7 1 3.7709 -1.3139 -2.2272 8 6 4.6385 -1.5122 -0.2777 9 7 5.3808 -0.8987 0.6194 10 14 4.3140 -3.3455 -0.1260 11 1 3.4571 -3.7916 -1.2538 12 1 5.6033 -4.0813 -0.1634 13 1 3.6239 -3.6212 1.1597 14 6 4.2863 1.4008 -2.4148 15 6 3.3173 1.0723 -3.5529 16 6 3.6229 1.9727 -4.7541 17 7 5.0413 1.8245 -5.1074 18 6 5.4060 1.5065 -6.3654 19 8 4.5580 1.2490 -7.1973 20 6 6.8372 1.4766 -6.7350 21 6 7.6726 2.5506 -6.4249 22 7 8.9482 2.5222 -6.7499 23 6 9.4833 1.4956 -7.3830 24 6 8.7213 0.3948 -7.7304 25 6 7.3759 0.3730 -7.4067 26 6 6.5129 -0.8082 -7.7690 27 6 6.0543 2.0237 -4.0621 28 6 5.7218 1.1283 -2.8699 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8465 -0.8900 34 1 3.8514 0.5683 0.8409 35 1 3.9784 2.1767 0.0890 36 1 5.7590 -1.3986 1.3597 37 1 4.1849 2.4516 -2.1435 38 1 2.2937 1.2445 -3.2203 39 1 3.4354 0.0279 -3.8417 40 1 3.4177 3.0112 -4.4940 41 1 3.0027 1.6787 -5.6009 42 1 7.2701 3.4110 -5.9110 43 1 10.5335 1.5152 -7.6343 44 1 9.1716 -0.4392 -8.2481 45 1 6.0826 -0.6540 -8.7584 46 1 7.1198 -1.7136 -7.7738 47 1 5.7123 -0.9113 -7.0365 48 1 7.0379 1.7610 -4.4516 49 1 6.0515 3.0663 -3.7444 50 1 6.4095 1.3402 -2.0513 51 1 5.8177 0.0833 -3.1650 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569455674.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:11 Heat of formation + Delta-G solvation = -37.132938 kcal Electronic energy + Delta-G solvation = -32088.925413 eV Core-core repulsion = 27988.468428 eV Total energy + Delta-G solvation = -4100.456985 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.95768 -40.39867 -39.12859 -38.29860 -36.56867 -34.89323 -33.95274 -32.95060 -32.17947 -31.56152 -29.78331 -28.93231 -27.15405 -26.69643 -25.55560 -24.37236 -24.23271 -23.16264 -22.35047 -21.59886 -20.29989 -18.76893 -18.07530 -17.64700 -17.39292 -17.25188 -17.04634 -16.69772 -16.52579 -16.03993 -15.70173 -15.52745 -15.43703 -15.23435 -15.07173 -14.89671 -14.51062 -14.41608 -13.95765 -13.78450 -13.69357 -13.61587 -13.42899 -13.28109 -13.10492 -12.92973 -12.78501 -12.74929 -12.58289 -12.34380 -12.23194 -12.09105 -11.80205 -11.52557 -11.51501 -11.29477 -11.07554 -10.56232 -10.43999 -10.40008 -10.30445 -10.10682 -9.67439 -8.38862 -7.71070 -5.32564 -0.23108 0.17013 1.41728 1.46995 1.53954 1.54781 1.96121 2.56528 2.74121 3.22839 3.27286 3.39531 3.52296 3.62245 3.65466 3.76208 3.93957 4.04300 4.15709 4.23239 4.31936 4.41820 4.43360 4.45376 4.50073 4.53769 4.62281 4.63373 4.65001 4.69183 4.72423 4.78940 4.82048 4.83925 4.84917 4.90864 4.92944 5.02497 5.07132 5.13722 5.17238 5.26070 5.45657 5.61207 5.61731 5.66246 5.76807 5.85947 6.31210 6.54450 6.70548 6.86256 7.01571 7.31791 7.99299 8.50219 9.24301 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012674 B = 0.003283 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.678648 B = 8525.834497 C = 9250.538365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.054 3.946 4 C 0.145 3.855 5 N -0.583 5.583 6 C -0.217 4.217 7 H 0.033 0.967 8 C -0.021 4.021 9 N -0.915 5.915 10 Si 0.933 3.067 11 H -0.280 1.280 12 H -0.295 1.295 13 H -0.294 1.294 14 C 0.174 3.826 15 C -0.125 4.125 16 C 0.121 3.879 17 N -0.596 5.596 18 C 0.565 3.435 19 O -0.572 6.572 20 C -0.200 4.200 21 C 0.136 3.864 22 N -0.507 5.507 23 C 0.117 3.883 24 C -0.172 4.172 25 C -0.010 4.010 26 C -0.115 4.115 27 C 0.115 3.885 28 C -0.120 4.120 29 H 0.079 0.921 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.246 0.754 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.031 0.969 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.173 0.827 43 H 0.194 0.806 44 H 0.173 0.827 45 H 0.086 0.914 46 H 0.096 0.904 47 H 0.045 0.955 48 H 0.083 0.917 49 H 0.099 0.901 50 H 0.059 0.941 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.969 8.401 -12.417 15.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C -0.025 4.025 4 C 0.019 3.981 5 N -0.303 5.303 6 C -0.348 4.348 7 H 0.050 0.950 8 C -0.218 4.218 9 N -0.560 5.560 10 Si 0.764 3.236 11 H -0.205 1.205 12 H -0.222 1.222 13 H -0.221 1.221 14 C 0.067 3.933 15 C -0.165 4.165 16 C -0.001 4.001 17 N -0.327 5.327 18 C 0.353 3.647 19 O -0.452 6.452 20 C -0.205 4.205 21 C -0.022 4.022 22 N -0.216 5.216 23 C -0.039 4.039 24 C -0.191 4.191 25 C -0.019 4.019 26 C -0.171 4.171 27 C -0.007 4.007 28 C -0.160 4.160 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.050 0.950 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.190 0.810 43 H 0.211 0.789 44 H 0.191 0.809 45 H 0.105 0.895 46 H 0.114 0.886 47 H 0.064 0.936 48 H 0.101 0.899 49 H 0.117 0.883 50 H 0.078 0.922 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.236 8.753 -12.461 15.569 hybrid contribution -1.154 -1.979 0.431 2.331 sum 2.082 6.775 -12.030 13.963 Atomic orbital electron populations 1.22795 0.81753 1.02433 1.00012 1.88140 1.19431 1.28975 1.95183 1.23297 0.96900 0.83850 0.98443 1.20921 0.89516 0.96339 0.91320 1.43844 1.75761 1.02074 1.08620 1.18588 1.31689 0.83326 1.01204 0.94972 1.25495 0.96881 0.99557 0.99858 1.70063 1.34218 1.35905 1.15779 0.85753 0.76816 0.83890 0.77143 1.20465 1.22232 1.22136 1.20525 0.91591 0.94031 0.87133 1.22175 1.00247 0.98495 0.95551 1.21667 0.80487 1.00644 0.97343 1.48142 1.08385 1.67688 1.08477 1.18383 0.88297 0.75903 0.82076 1.90730 1.53147 1.50769 1.50595 1.20849 0.94416 0.99143 1.06113 1.23130 0.88591 0.96577 0.93935 1.67780 1.12517 1.28290 1.13036 1.23548 1.01861 0.87697 0.90773 1.22347 0.92581 1.01757 1.02429 1.20643 0.95489 0.94283 0.91459 1.20848 0.98593 0.95289 1.02373 1.21920 0.90858 1.01008 0.86952 1.21988 0.98953 0.98602 0.96463 0.90288 0.93528 0.93901 0.93641 0.94012 0.92355 0.92419 0.94506 0.91008 0.91439 0.95029 0.88653 0.90373 0.81023 0.78894 0.80940 0.89534 0.88556 0.93604 0.89850 0.88251 0.92201 0.94842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.40 -16.79 10.18 -148.98 -1.52 -18.30 16 3 C 0.05 2.00 6.28 71.98 0.45 2.45 16 4 C 0.15 6.31 5.70 86.38 0.49 6.81 16 5 N -0.58 -26.62 2.32 -677.89 -1.57 -28.19 16 6 C -0.22 -11.51 7.61 84.03 0.64 -10.87 16 7 H 0.03 1.83 7.05 -2.91 -0.02 1.81 16 8 C -0.02 -1.16 4.96 84.86 0.42 -0.74 16 9 N -0.91 -52.29 11.62 21.65 0.25 -52.04 16 10 Si 0.93 46.32 29.60 68.60 2.03 48.35 16 11 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 12 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 13 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 14 C 0.17 6.38 2.60 45.02 0.12 6.49 16 15 C -0.12 -4.29 5.35 30.67 0.16 -4.13 16 16 C 0.12 3.42 6.44 86.36 0.56 3.98 16 17 N -0.60 -17.12 2.98 -823.16 -2.45 -19.57 16 18 C 0.56 17.45 6.35 86.79 0.55 18.00 16 19 O -0.57 -20.91 15.28 -3.88 -0.06 -20.97 16 20 C -0.20 -5.28 4.78 -19.99 -0.10 -5.38 16 21 C 0.14 3.12 8.79 85.04 0.75 3.87 16 22 N -0.51 -11.24 10.35 -194.76 -2.01 -13.26 16 23 C 0.12 2.00 11.17 84.69 0.95 2.95 16 24 C -0.17 -2.95 9.81 22.32 0.22 -2.73 16 25 C -0.01 -0.25 5.95 -19.40 -0.12 -0.36 16 26 C -0.11 -2.64 9.16 71.24 0.65 -1.99 16 27 C 0.12 3.07 5.33 86.22 0.46 3.52 16 28 C -0.12 -4.33 5.24 30.53 0.16 -4.17 16 29 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 3.05 5.71 -2.39 -0.01 3.04 16 35 H 0.06 2.24 7.90 -2.39 -0.02 2.22 16 36 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 37 H 0.07 2.30 7.77 -2.39 -0.02 2.29 16 38 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.03 1.30 7.19 -2.39 -0.02 1.29 16 40 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 41 H 0.08 2.37 6.99 -2.39 -0.02 2.36 16 42 H 0.17 3.32 7.45 -2.91 -0.02 3.30 16 43 H 0.19 1.84 8.06 -2.91 -0.02 1.81 16 44 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 45 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.10 1.68 8.10 -2.39 -0.02 1.67 16 47 H 0.04 1.34 6.88 -2.39 -0.02 1.32 16 48 H 0.08 2.15 5.20 -2.38 -0.01 2.14 16 49 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 50 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 51 H 0.03 1.44 7.65 -2.38 -0.02 1.42 16 Total: -1.00 -70.69 403.89 3.20 -67.49 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.92 Total: 16.73 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: 7.61 Total: 19.77 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -5.79 Total: -113.06 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -1.58 Total: -39.28 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -70.69 3.20 -67.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569455674.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.362 kcal (2) G-P(sol) polarization free energy of solvation -70.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds