Wall clock time and date at job start Wed Apr 1 2020 07:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42909 * 113.99682 * 2 1 4 4 H 1.08993 * 112.88471 * 338.15782 * 3 2 1 5 5 C 1.53948 * 113.66147 * 109.50746 * 3 2 1 6 6 C 1.53948 * 87.29432 * 89.82951 * 5 3 2 7 7 H 1.09001 * 113.66407 * 139.29660 * 6 5 3 8 8 N 1.46495 * 113.66378 * 270.25931 * 6 5 3 9 9 C 1.46501 * 119.99913 * 4.55769 * 8 6 5 10 10 C 1.34773 * 120.00323 * 184.55579 * 8 6 5 11 11 O 1.21600 * 119.99882 * 4.15626 * 10 8 6 12 12 C 1.47428 * 120.00219 * 184.14849 * 10 8 6 13 13 C 1.41289 * 126.41401 * 353.79676 * 12 10 8 14 14 N 1.30448 * 108.02172 * 179.75993 * 13 12 10 15 15 N 1.39930 * 108.89805 * 0.40574 * 14 13 12 16 16 C 1.46500 * 125.75299 * 179.85102 * 15 14 13 17 17 C 1.50697 * 109.47033 * 269.68859 * 16 15 14 18 18 H 1.07998 * 120.00232 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99750 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00083 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99680 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47087 * 179.97438 * 21 19 17 23 23 H 1.48496 * 109.47181 * 59.99962 * 21 19 17 24 24 H 1.48500 * 109.47002 * 299.99811 * 21 19 17 25 25 C 1.34256 * 108.49416 * 359.58277 * 15 14 13 26 26 C 1.50692 * 126.29501 * 180.22022 * 25 15 14 27 27 C 1.52905 * 86.88829 * 24.78008 * 6 5 3 28 28 C 1.52907 * 121.14397 * 209.33802 * 27 6 5 29 29 C 1.53954 * 86.78189 * 209.37253 * 28 27 6 30 30 C 1.52907 * 121.14207 * 100.76568 * 27 6 5 31 31 H 1.08993 * 109.47554 * 60.00355 * 1 2 3 32 32 H 1.09000 * 109.46747 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46948 * 299.99626 * 1 2 3 34 34 H 1.08991 * 113.58253 * 335.22183 * 5 3 2 35 35 H 1.09003 * 113.64890 * 204.44338 * 5 3 2 36 36 H 1.09002 * 109.47594 * 242.03870 * 9 8 6 37 37 H 1.09001 * 109.47011 * 2.03399 * 9 8 6 38 38 H 1.08997 * 109.47463 * 122.03674 * 9 8 6 39 39 H 1.08000 * 125.98917 * 0.02562 * 13 12 10 40 40 H 1.09002 * 109.46969 * 149.69030 * 16 15 14 41 41 H 1.09002 * 109.47305 * 29.69265 * 16 15 14 42 42 H 0.96993 * 120.00147 * 359.97438 * 20 19 17 43 43 H 1.09005 * 109.47108 * 90.02763 * 26 25 15 44 44 H 1.09001 * 109.47083 * 210.02750 * 26 25 15 45 45 H 1.08999 * 109.47410 * 330.02798 * 26 25 15 46 46 H 1.09002 * 113.65802 * 323.84233 * 28 27 6 47 47 H 1.08993 * 113.66553 * 94.90392 * 28 27 6 48 48 H 1.08999 * 113.58334 * 270.12867 * 29 28 27 49 49 H 1.09001 * 113.58087 * 139.33252 * 29 28 27 50 50 H 1.09005 * 113.66713 * 265.10542 * 30 27 6 51 51 H 1.09006 * 113.66059 * 36.15684 * 30 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3311 2.0718 -0.3736 5 6 2.6916 1.6785 1.3291 6 6 3.9825 1.0673 0.7546 7 1 4.8792 1.6426 0.9852 8 7 4.1336 -0.3618 1.0389 9 6 3.0600 -1.0910 1.7185 10 6 5.2604 -1.0058 0.6754 11 8 6.1819 -0.3861 0.1799 12 6 5.3757 -2.4614 0.8786 13 6 4.4483 -3.2909 1.5480 14 7 4.9021 -4.5134 1.5136 15 7 6.1279 -4.5230 0.8388 16 6 6.9599 -5.7033 0.5919 17 6 7.9285 -5.8827 1.7323 18 1 7.9245 -5.1873 2.5586 19 6 8.8198 -6.9346 1.7208 20 7 8.8244 -7.7816 0.7148 21 14 10.0200 -7.1573 3.1348 22 1 10.8634 -8.3537 2.8844 23 1 9.2652 -7.3405 4.4005 24 1 10.8850 -5.9552 3.2438 25 6 6.4102 -3.2692 0.4507 26 6 7.6320 -2.8250 -0.3114 27 6 3.4054 1.3597 -0.6308 28 6 3.7647 0.4909 -1.8367 29 6 3.5498 1.7490 -2.6976 30 6 3.8622 2.5759 -1.4372 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2973 1.1363 2.1885 35 1 2.7567 2.7530 1.5007 36 1 3.4279 -1.4769 2.6692 37 1 2.2218 -0.4181 1.8996 38 1 2.7313 -1.9205 1.0924 39 1 3.5235 -2.9699 2.0041 40 1 7.5136 -5.5695 -0.3375 41 1 6.3246 -6.5855 0.5125 42 1 8.2004 -7.6666 -0.0189 43 1 7.4329 -2.8808 -1.3816 44 1 7.8759 -1.7979 -0.0402 45 1 8.4711 -3.4752 -0.0636 46 1 4.7956 0.1369 -1.8290 47 1 3.0442 -0.3027 -2.0343 48 1 2.5257 1.8649 -3.0524 49 1 4.2887 1.8664 -3.4903 50 1 3.2196 3.4480 -1.3157 51 1 4.9205 2.8079 -1.3173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647397906.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:32:39 Heat of formation + Delta-G solvation = 63.204556 kcal Electronic energy + Delta-G solvation = -32293.020677 eV Core-core repulsion = 28196.914652 eV Total energy + Delta-G solvation = -4096.106025 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.47672 -40.64637 -38.31840 -37.30886 -35.62231 -34.23981 -33.21999 -31.91357 -30.95957 -27.77440 -27.16597 -27.02506 -26.37589 -25.60820 -24.64240 -24.53953 -23.31103 -21.83415 -20.67207 -20.04356 -18.53039 -18.16329 -17.33409 -16.98782 -16.37614 -16.25248 -15.90074 -15.79155 -15.10988 -15.07120 -14.76400 -14.29249 -14.06581 -13.87241 -13.71424 -13.46983 -13.03857 -12.75522 -12.57609 -12.56410 -12.49095 -12.37037 -12.28143 -12.17195 -12.05336 -11.87653 -11.53721 -11.40222 -11.17420 -11.11199 -10.95319 -10.78310 -10.47323 -10.38223 -10.25773 -10.19497 -10.13305 -9.58004 -9.42316 -9.25831 -8.62890 -8.50041 -8.28228 -7.83099 -6.64485 -4.40569 2.22267 2.85116 3.02785 3.30578 3.35668 3.36675 3.45060 3.56223 3.92877 4.23457 4.29309 4.36823 4.43978 4.61380 4.62105 4.76376 4.95905 5.04375 5.07555 5.10226 5.18200 5.25127 5.27029 5.28881 5.34713 5.38843 5.49317 5.50127 5.60242 5.62251 5.68640 5.75720 5.76458 5.80183 5.89310 5.94122 6.01238 6.07141 6.11301 6.26722 6.40822 6.41660 6.56977 6.61012 6.70782 6.81557 6.96728 7.16106 7.60177 7.66900 7.74758 8.21293 8.40413 8.51909 8.69494 9.28501 10.73098 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019194 B = 0.002711 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.475348 B =10327.435315 C =10785.561854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.090 3.910 4 H 0.072 0.928 5 C -0.171 4.171 6 C 0.151 3.849 7 H 0.090 0.910 8 N -0.590 5.590 9 C 0.075 3.925 10 C 0.608 3.392 11 O -0.556 6.556 12 C -0.324 4.324 13 C 0.040 3.960 14 N -0.300 5.300 15 N -0.314 5.314 16 C 0.243 3.757 17 C -0.618 4.618 18 H 0.060 0.940 19 C 0.028 3.972 20 N -0.899 5.899 21 Si 1.075 2.925 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.163 3.837 26 C -0.098 4.098 27 C -0.118 4.118 28 C -0.112 4.112 29 C -0.142 4.142 30 C -0.104 4.104 31 H 0.040 0.960 32 H 0.088 0.912 33 H 0.041 0.959 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.195 0.805 40 H 0.044 0.956 41 H 0.046 0.954 42 H 0.268 0.732 43 H 0.074 0.926 44 H 0.098 0.902 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.066 0.934 50 H 0.066 0.934 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.344 21.184 -2.733 26.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.271 6.271 3 C 0.031 3.969 4 H 0.090 0.910 5 C -0.208 4.208 6 C 0.047 3.953 7 H 0.108 0.892 8 N -0.322 5.322 9 C -0.068 4.068 10 C 0.400 3.600 11 O -0.436 6.436 12 C -0.340 4.340 13 C -0.146 4.146 14 N -0.120 5.120 15 N -0.090 5.090 16 C 0.125 3.875 17 C -0.656 4.656 18 H 0.078 0.922 19 C -0.178 4.178 20 N -0.534 5.534 21 Si 0.902 3.098 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.210 1.210 25 C 0.026 3.974 26 C -0.156 4.156 27 C -0.120 4.120 28 C -0.149 4.149 29 C -0.179 4.179 30 C -0.142 4.142 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.059 0.941 34 H 0.105 0.895 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.211 0.789 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.117 0.883 45 H 0.099 0.901 46 H 0.109 0.891 47 H 0.086 0.914 48 H 0.092 0.908 49 H 0.085 0.915 50 H 0.084 0.916 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.672 18.949 -2.104 24.058 hybrid contribution -1.594 1.859 -0.671 2.539 sum -16.267 20.808 -2.775 26.557 Atomic orbital electron populations 1.22824 0.81312 1.02944 0.99801 1.88042 1.19125 1.25733 1.94179 1.22801 0.93309 0.85282 0.95489 0.90967 1.23924 0.96814 1.01675 0.98414 1.21480 0.97389 0.82275 0.94190 0.89208 1.47011 1.17406 1.07889 1.59865 1.22368 0.90730 0.97626 0.96027 1.17215 0.80779 0.85629 0.76336 1.90657 1.38519 1.68255 1.46150 1.19643 1.00884 0.93820 1.19611 1.24850 1.00054 0.90402 0.99308 1.77154 0.96670 1.21225 1.16993 1.49069 1.14919 1.07426 1.37602 1.19825 0.88857 0.80543 0.98311 1.22129 1.20232 1.16184 1.07046 0.92205 1.25924 0.98371 0.91774 1.01703 1.70840 1.37209 1.36498 1.08865 0.83439 0.75575 0.76577 0.74215 1.20381 1.21122 1.21038 1.21423 0.95806 0.85090 0.95055 1.20614 0.92943 1.03674 0.98386 1.23222 0.94932 0.99053 0.94765 1.22492 1.02626 0.96109 0.93703 1.22850 1.01197 0.97262 0.96604 1.22537 1.01732 0.94873 0.95012 0.94177 0.89399 0.94076 0.89463 0.88200 0.92722 0.89625 0.91160 0.78856 0.93806 0.93615 0.92135 0.90783 0.88319 0.90120 0.89143 0.91369 0.90777 0.91502 0.91556 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.86 101.05 1.10 1.28 16 2 O -0.35 -3.34 6.88 -35.23 -0.24 -3.58 16 3 C 0.09 0.77 4.16 -26.13 -0.11 0.66 16 4 H 0.07 0.51 7.90 -51.93 -0.41 0.10 16 5 C -0.17 -1.39 7.20 -25.75 -0.19 -1.57 16 6 C 0.15 1.75 3.84 -67.49 -0.26 1.50 16 7 H 0.09 1.15 7.95 -51.93 -0.41 0.73 16 8 N -0.59 -8.16 2.79 -174.69 -0.49 -8.65 16 9 C 0.07 0.86 6.49 59.85 0.39 1.25 16 10 C 0.61 10.77 7.00 -12.52 -0.09 10.68 16 11 O -0.56 -10.85 13.85 5.28 0.07 -10.78 16 12 C -0.32 -6.34 6.04 -105.06 -0.63 -6.98 16 13 C 0.04 0.75 9.91 -16.98 -0.17 0.58 16 14 N -0.30 -6.78 12.50 30.86 0.39 -6.40 16 15 N -0.31 -7.41 3.56 -57.78 -0.21 -7.62 16 16 C 0.24 6.19 5.09 -5.20 -0.03 6.16 16 17 C -0.62 -17.21 9.39 -34.44 -0.32 -17.54 16 18 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 19 C 0.03 0.77 5.46 -17.82 -0.10 0.68 16 20 N -0.90 -26.02 13.65 55.43 0.76 -25.27 16 21 Si 1.08 24.70 29.90 -169.99 -5.08 19.62 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 C 0.16 3.51 7.00 -81.60 -0.57 2.93 16 26 C -0.10 -1.87 9.41 36.00 0.34 -1.53 16 27 C -0.12 -1.22 0.90 -154.56 -0.14 -1.36 16 28 C -0.11 -1.37 7.10 -26.28 -0.19 -1.56 16 29 C -0.14 -1.34 8.08 -25.75 -0.21 -1.55 16 30 C -0.10 -0.92 7.84 -26.29 -0.21 -1.12 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.09 0.68 5.94 -51.93 -0.31 0.38 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.62 6.69 -51.93 -0.35 0.27 16 37 H 0.09 0.80 3.83 -51.93 -0.20 0.60 16 38 H 0.07 0.86 6.20 -51.93 -0.32 0.54 16 39 H 0.20 2.81 4.17 -52.49 -0.22 2.59 16 40 H 0.04 1.10 7.49 -51.93 -0.39 0.71 16 41 H 0.05 1.22 8.01 -51.93 -0.42 0.80 16 42 H 0.27 7.63 7.22 -40.82 -0.29 7.33 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.10 1.85 6.40 -51.93 -0.33 1.52 16 45 H 0.08 1.60 7.70 -51.93 -0.40 1.20 16 46 H 0.09 1.37 6.99 -51.93 -0.36 1.00 16 47 H 0.07 0.91 7.85 -51.93 -0.41 0.50 16 48 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 395.66 15.07 5.96 5.96 Total: -1.00 -32.68 395.66 -8.05 -40.73 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -7.83 Total: 3.49 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -1.38 Total: -7.50 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 0.45 Total: -47.93 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.17 Total: -14.36 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -5.08 Total: 19.62 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.68 -8.05 -40.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647397906.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.934 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds