Wall clock time and date at job start Wed Apr 1 2020 07:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42909 * 113.99682 * 2 1 4 4 H 1.08993 * 112.88471 * 338.15782 * 3 2 1 5 5 C 1.53948 * 113.66147 * 109.50746 * 3 2 1 6 6 C 1.53948 * 87.29432 * 89.82951 * 5 3 2 7 7 H 1.09001 * 113.66407 * 139.29660 * 6 5 3 8 8 N 1.46495 * 113.66378 * 270.25931 * 6 5 3 9 9 C 1.46501 * 119.99913 * 4.55769 * 8 6 5 10 10 C 1.34773 * 120.00323 * 184.55579 * 8 6 5 11 11 O 1.21600 * 119.99882 * 4.15626 * 10 8 6 12 12 C 1.47428 * 120.00219 * 184.14849 * 10 8 6 13 13 C 1.41289 * 126.41401 * 353.79676 * 12 10 8 14 14 N 1.30448 * 108.02172 * 179.75993 * 13 12 10 15 15 N 1.39930 * 108.89805 * 0.40574 * 14 13 12 16 16 C 1.46500 * 125.75299 * 179.85102 * 15 14 13 17 17 C 1.50697 * 109.47033 * 269.68859 * 16 15 14 18 18 H 1.07998 * 120.00232 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99750 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00083 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99680 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47087 * 179.97438 * 21 19 17 23 23 H 1.48496 * 109.47181 * 59.99962 * 21 19 17 24 24 H 1.48500 * 109.47002 * 299.99811 * 21 19 17 25 25 C 1.34256 * 108.49416 * 359.58277 * 15 14 13 26 26 C 1.50692 * 126.29501 * 180.22022 * 25 15 14 27 27 C 1.52905 * 86.88829 * 24.78008 * 6 5 3 28 28 C 1.52907 * 121.14397 * 209.33802 * 27 6 5 29 29 C 1.53954 * 86.78189 * 209.37253 * 28 27 6 30 30 C 1.52907 * 121.14207 * 100.76568 * 27 6 5 31 31 H 1.08993 * 109.47554 * 60.00355 * 1 2 3 32 32 H 1.09000 * 109.46747 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46948 * 299.99626 * 1 2 3 34 34 H 1.08991 * 113.58253 * 335.22183 * 5 3 2 35 35 H 1.09003 * 113.64890 * 204.44338 * 5 3 2 36 36 H 1.09002 * 109.47594 * 242.03870 * 9 8 6 37 37 H 1.09001 * 109.47011 * 2.03399 * 9 8 6 38 38 H 1.08997 * 109.47463 * 122.03674 * 9 8 6 39 39 H 1.08000 * 125.98917 * 0.02562 * 13 12 10 40 40 H 1.09002 * 109.46969 * 149.69030 * 16 15 14 41 41 H 1.09002 * 109.47305 * 29.69265 * 16 15 14 42 42 H 0.96993 * 120.00147 * 359.97438 * 20 19 17 43 43 H 1.09005 * 109.47108 * 90.02763 * 26 25 15 44 44 H 1.09001 * 109.47083 * 210.02750 * 26 25 15 45 45 H 1.08999 * 109.47410 * 330.02798 * 26 25 15 46 46 H 1.09002 * 113.65802 * 323.84233 * 28 27 6 47 47 H 1.08993 * 113.66553 * 94.90392 * 28 27 6 48 48 H 1.08999 * 113.58334 * 270.12867 * 29 28 27 49 49 H 1.09001 * 113.58087 * 139.33252 * 29 28 27 50 50 H 1.09005 * 113.66713 * 265.10542 * 30 27 6 51 51 H 1.09006 * 113.66059 * 36.15684 * 30 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3311 2.0718 -0.3736 5 6 2.6916 1.6785 1.3291 6 6 3.9825 1.0673 0.7546 7 1 4.8792 1.6426 0.9852 8 7 4.1336 -0.3618 1.0389 9 6 3.0600 -1.0910 1.7185 10 6 5.2604 -1.0058 0.6754 11 8 6.1819 -0.3861 0.1799 12 6 5.3757 -2.4614 0.8786 13 6 4.4483 -3.2909 1.5480 14 7 4.9021 -4.5134 1.5136 15 7 6.1279 -4.5230 0.8388 16 6 6.9599 -5.7033 0.5919 17 6 7.9285 -5.8827 1.7323 18 1 7.9245 -5.1873 2.5586 19 6 8.8198 -6.9346 1.7208 20 7 8.8244 -7.7816 0.7148 21 14 10.0200 -7.1573 3.1348 22 1 10.8634 -8.3537 2.8844 23 1 9.2652 -7.3405 4.4005 24 1 10.8850 -5.9552 3.2438 25 6 6.4102 -3.2692 0.4507 26 6 7.6320 -2.8250 -0.3114 27 6 3.4054 1.3597 -0.6308 28 6 3.7647 0.4909 -1.8367 29 6 3.5498 1.7490 -2.6976 30 6 3.8622 2.5759 -1.4372 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.2973 1.1363 2.1885 35 1 2.7567 2.7530 1.5007 36 1 3.4279 -1.4769 2.6692 37 1 2.2218 -0.4181 1.8996 38 1 2.7313 -1.9205 1.0924 39 1 3.5235 -2.9699 2.0041 40 1 7.5136 -5.5695 -0.3375 41 1 6.3246 -6.5855 0.5125 42 1 8.2004 -7.6666 -0.0189 43 1 7.4329 -2.8808 -1.3816 44 1 7.8759 -1.7979 -0.0402 45 1 8.4711 -3.4752 -0.0636 46 1 4.7956 0.1369 -1.8290 47 1 3.0442 -0.3027 -2.0343 48 1 2.5257 1.8649 -3.0524 49 1 4.2887 1.8664 -3.4903 50 1 3.2196 3.4480 -1.3157 51 1 4.9205 2.8079 -1.3173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647397906.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:32:29 Heat of formation + Delta-G solvation = 43.649604 kcal Electronic energy + Delta-G solvation = -32293.868643 eV Core-core repulsion = 28196.914652 eV Total energy + Delta-G solvation = -4096.953991 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 16.03 seconds Orbital eigenvalues (eV) -42.61486 -41.98094 -39.61489 -37.98940 -36.71173 -36.17807 -34.40993 -33.53019 -32.65040 -29.14135 -28.51973 -28.08011 -27.62296 -26.45258 -25.70245 -25.43595 -25.07336 -23.07023 -22.00908 -21.26327 -19.96590 -19.32179 -19.05203 -18.07891 -17.63615 -17.23386 -16.81688 -16.74155 -16.50218 -16.44112 -15.77346 -15.66128 -15.58340 -15.22260 -14.83241 -14.65808 -14.42925 -14.17063 -13.97914 -13.85361 -13.74769 -13.63632 -13.40876 -13.26662 -13.13393 -13.04376 -12.92688 -12.91309 -12.60870 -12.18766 -11.97751 -11.89714 -11.83098 -11.75455 -11.41438 -11.27492 -11.21574 -10.98197 -10.75174 -10.71520 -10.28065 -10.22588 -9.65637 -9.29732 -8.86543 -6.65393 0.60401 1.28117 1.48651 1.54410 1.55217 1.77201 2.06641 2.44598 2.49446 2.70028 2.94513 3.47427 3.52597 3.63134 3.66327 3.73834 3.85926 3.87045 4.01202 4.04795 4.13328 4.29447 4.36066 4.40366 4.44638 4.52272 4.52498 4.58047 4.64402 4.66408 4.70103 4.73086 4.78592 4.84346 4.89810 4.90319 4.95739 4.98330 5.02707 5.04645 5.07435 5.13790 5.18804 5.42598 5.47481 5.54798 5.59068 5.73855 5.80565 6.08811 6.29423 6.38659 6.51026 6.73667 7.11526 7.34201 8.50687 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019194 B = 0.002711 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.475348 B =10327.435315 C =10785.561854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.377 6.377 3 C 0.096 3.904 4 H 0.099 0.901 5 C -0.151 4.151 6 C 0.128 3.872 7 H 0.074 0.926 8 N -0.579 5.579 9 C 0.069 3.931 10 C 0.603 3.397 11 O -0.581 6.581 12 C -0.325 4.325 13 C 0.060 3.940 14 N -0.338 5.338 15 N -0.337 5.337 16 C 0.255 3.745 17 C -0.629 4.629 18 H 0.043 0.957 19 C -0.013 4.013 20 N -0.917 5.917 21 Si 1.119 2.881 22 H -0.273 1.273 23 H -0.274 1.274 24 H -0.269 1.269 25 C 0.142 3.858 26 C -0.088 4.088 27 C -0.119 4.119 28 C -0.122 4.122 29 C -0.133 4.133 30 C -0.094 4.094 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.127 0.873 36 H 0.060 0.940 37 H 0.115 0.885 38 H 0.064 0.936 39 H 0.237 0.763 40 H 0.043 0.957 41 H 0.027 0.973 42 H 0.260 0.740 43 H 0.089 0.911 44 H 0.100 0.900 45 H 0.067 0.933 46 H 0.052 0.948 47 H 0.051 0.949 48 H 0.091 0.909 49 H 0.064 0.936 50 H 0.096 0.904 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.554 23.932 -1.597 30.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.296 6.296 3 C 0.037 3.963 4 H 0.116 0.884 5 C -0.189 4.189 6 C 0.024 3.976 7 H 0.092 0.908 8 N -0.309 5.309 9 C -0.072 4.072 10 C 0.394 3.606 11 O -0.463 6.463 12 C -0.340 4.340 13 C -0.126 4.126 14 N -0.158 5.158 15 N -0.114 5.114 16 C 0.136 3.864 17 C -0.667 4.667 18 H 0.062 0.938 19 C -0.214 4.214 20 N -0.552 5.552 21 Si 0.939 3.061 22 H -0.198 1.198 23 H -0.200 1.200 24 H -0.194 1.194 25 C 0.007 3.993 26 C -0.146 4.146 27 C -0.121 4.121 28 C -0.160 4.160 29 C -0.170 4.170 30 C -0.132 4.132 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.145 0.855 36 H 0.079 0.921 37 H 0.133 0.867 38 H 0.082 0.918 39 H 0.252 0.748 40 H 0.061 0.939 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.107 0.893 44 H 0.119 0.881 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.110 0.890 49 H 0.082 0.918 50 H 0.115 0.885 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.935 21.733 -0.975 27.570 hybrid contribution -1.022 1.096 -1.078 1.846 sum -17.958 22.829 -2.053 29.118 Atomic orbital electron populations 1.22963 0.79751 1.03477 1.00996 1.88008 1.20876 1.26456 1.94266 1.22810 0.92598 0.85694 0.95151 0.88371 1.23927 0.93557 1.03062 0.98320 1.21807 0.98754 0.80656 0.96334 0.90840 1.47005 1.16421 1.09045 1.58444 1.22516 0.90912 0.98108 0.95694 1.17075 0.81876 0.84891 0.76754 1.90636 1.39814 1.68437 1.47443 1.20004 1.00278 0.95039 1.18679 1.25579 1.00616 0.88910 0.97497 1.77104 0.96851 1.23348 1.18485 1.48866 1.15650 1.07389 1.39500 1.19428 0.88394 0.80980 0.97591 1.22289 1.21106 1.16081 1.07242 0.93814 1.27320 0.99668 0.91187 1.03190 1.70938 1.37612 1.37284 1.09401 0.82901 0.74101 0.77282 0.71806 1.19789 1.19954 1.19365 1.21922 0.97095 0.84806 0.95520 1.20565 0.91781 1.03199 0.99099 1.23357 0.96593 0.98924 0.93217 1.22388 0.99866 0.96976 0.96784 1.22837 1.02126 0.95433 0.96632 1.22479 1.01695 0.95309 0.93720 0.93498 0.89339 0.92297 0.88653 0.85483 0.92129 0.86695 0.91779 0.74775 0.93924 0.95513 0.92999 0.89286 0.88105 0.91397 0.92918 0.93047 0.89041 0.91765 0.88523 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.86 113.37 1.23 1.46 16 2 O -0.38 -6.00 6.88 -148.98 -1.02 -7.03 16 3 C 0.10 1.28 4.16 30.99 0.13 1.41 16 4 H 0.10 0.86 7.90 -2.39 -0.02 0.84 16 5 C -0.15 -1.84 7.20 31.23 0.22 -1.62 16 6 C 0.13 2.75 3.84 45.28 0.17 2.92 16 7 H 0.07 1.82 7.95 -2.39 -0.02 1.80 16 8 N -0.58 -15.37 2.79 -824.87 -2.30 -17.67 16 9 C 0.07 1.42 6.49 127.77 0.83 2.25 16 10 C 0.60 21.50 7.00 86.66 0.61 22.11 16 11 O -0.58 -23.32 13.85 -4.03 -0.06 -23.37 16 12 C -0.32 -12.86 6.04 -20.15 -0.12 -12.98 16 13 C 0.06 2.21 9.91 85.65 0.85 3.06 16 14 N -0.34 -15.55 12.50 -56.27 -0.70 -16.25 16 15 N -0.34 -16.54 3.56 -336.71 -1.20 -17.73 16 16 C 0.26 13.65 5.09 85.63 0.44 14.08 16 17 C -0.63 -36.16 9.39 25.60 0.24 -35.92 16 18 H 0.04 2.61 7.81 -2.91 -0.02 2.58 16 19 C -0.01 -0.74 5.46 84.66 0.46 -0.28 16 20 N -0.92 -54.14 13.65 21.45 0.29 -53.85 16 21 Si 1.12 49.74 29.90 68.60 2.05 51.79 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 25 C 0.14 6.31 7.00 42.14 0.30 6.61 16 26 C -0.09 -3.52 9.41 71.23 0.67 -2.85 16 27 C -0.12 -2.24 0.90 -52.21 -0.05 -2.29 16 28 C -0.12 -3.01 7.10 30.89 0.22 -2.79 16 29 C -0.13 -2.32 8.08 31.23 0.25 -2.07 16 30 C -0.09 -1.45 7.84 30.88 0.24 -1.21 16 31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.10 1.04 5.94 -2.39 -0.01 1.03 16 35 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 1.20 6.69 -2.39 -0.02 1.18 16 37 H 0.12 1.72 3.83 -2.39 -0.01 1.71 16 38 H 0.06 1.43 6.20 -2.39 -0.01 1.42 16 39 H 0.24 6.37 4.17 -2.91 -0.01 6.36 16 40 H 0.04 2.25 7.49 -2.39 -0.02 2.24 16 41 H 0.03 1.51 8.01 -2.39 -0.02 1.49 16 42 H 0.26 15.34 7.22 -92.71 -0.67 14.67 16 43 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16 44 H 0.10 3.94 6.40 -2.39 -0.02 3.93 16 45 H 0.07 2.84 7.70 -2.39 -0.02 2.82 16 46 H 0.05 1.68 6.99 -2.39 -0.02 1.67 16 47 H 0.05 1.39 7.85 -2.39 -0.02 1.37 16 48 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 51 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -74.11 395.66 4.79 -69.32 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 1.04 Total: 22.89 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 6.69 Total: -8.09 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -3.91 Total: -105.50 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -1.08 Total: -30.40 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 2.05 Total: 51.79 kcal Total: -74.11 4.79 -69.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647397906.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.967 kcal (2) G-P(sol) polarization free energy of solvation -74.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.03 seconds