Wall clock time and date at job start Wed Apr 1 2020 07:32:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.42909 * 113.99682 * 2 1
4 4 H 1.08993 * 112.88471 * 338.15782 * 3 2 1
5 5 C 1.53948 * 113.66147 * 109.50746 * 3 2 1
6 6 C 1.53948 * 87.29432 * 89.82951 * 5 3 2
7 7 H 1.09001 * 113.66407 * 139.29660 * 6 5 3
8 8 N 1.46495 * 113.66378 * 270.25931 * 6 5 3
9 9 C 1.46501 * 119.99913 * 4.55769 * 8 6 5
10 10 C 1.34773 * 120.00323 * 184.55579 * 8 6 5
11 11 O 1.21600 * 119.99882 * 4.15626 * 10 8 6
12 12 C 1.47428 * 120.00219 * 184.14849 * 10 8 6
13 13 C 1.41289 * 126.41401 * 353.79676 * 12 10 8
14 14 N 1.30448 * 108.02172 * 179.75993 * 13 12 10
15 15 N 1.39930 * 108.89805 * 0.40574 * 14 13 12
16 16 C 1.46500 * 125.75299 * 179.85102 * 15 14 13
17 17 C 1.50697 * 109.47033 * 269.68859 * 16 15 14
18 18 H 1.07998 * 120.00232 * 0.02562 * 17 16 15
19 19 C 1.37884 * 119.99750 * 180.02562 * 17 16 15
20 20 N 1.31509 * 120.00083 * 359.97438 * 19 17 16
21 21 Si 1.86804 * 119.99680 * 180.02562 * 19 17 16
22 22 H 1.48504 * 109.47087 * 179.97438 * 21 19 17
23 23 H 1.48496 * 109.47181 * 59.99962 * 21 19 17
24 24 H 1.48500 * 109.47002 * 299.99811 * 21 19 17
25 25 C 1.34256 * 108.49416 * 359.58277 * 15 14 13
26 26 C 1.50692 * 126.29501 * 180.22022 * 25 15 14
27 27 C 1.52905 * 86.88829 * 24.78008 * 6 5 3
28 28 C 1.52907 * 121.14397 * 209.33802 * 27 6 5
29 29 C 1.53954 * 86.78189 * 209.37253 * 28 27 6
30 30 C 1.52907 * 121.14207 * 100.76568 * 27 6 5
31 31 H 1.08993 * 109.47554 * 60.00355 * 1 2 3
32 32 H 1.09000 * 109.46747 * 180.02562 * 1 2 3
33 33 H 1.09002 * 109.46948 * 299.99626 * 1 2 3
34 34 H 1.08991 * 113.58253 * 335.22183 * 5 3 2
35 35 H 1.09003 * 113.64890 * 204.44338 * 5 3 2
36 36 H 1.09002 * 109.47594 * 242.03870 * 9 8 6
37 37 H 1.09001 * 109.47011 * 2.03399 * 9 8 6
38 38 H 1.08997 * 109.47463 * 122.03674 * 9 8 6
39 39 H 1.08000 * 125.98917 * 0.02562 * 13 12 10
40 40 H 1.09002 * 109.46969 * 149.69030 * 16 15 14
41 41 H 1.09002 * 109.47305 * 29.69265 * 16 15 14
42 42 H 0.96993 * 120.00147 * 359.97438 * 20 19 17
43 43 H 1.09005 * 109.47108 * 90.02763 * 26 25 15
44 44 H 1.09001 * 109.47083 * 210.02750 * 26 25 15
45 45 H 1.08999 * 109.47410 * 330.02798 * 26 25 15
46 46 H 1.09002 * 113.65802 * 323.84233 * 28 27 6
47 47 H 1.08993 * 113.66553 * 94.90392 * 28 27 6
48 48 H 1.08999 * 113.58334 * 270.12867 * 29 28 27
49 49 H 1.09001 * 113.58087 * 139.33252 * 29 28 27
50 50 H 1.09005 * 113.66713 * 265.10542 * 30 27 6
51 51 H 1.09006 * 113.66059 * 36.15684 * 30 27 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3056 0.0000
4 1 1.3311 2.0718 -0.3736
5 6 2.6916 1.6785 1.3291
6 6 3.9825 1.0673 0.7546
7 1 4.8792 1.6426 0.9852
8 7 4.1336 -0.3618 1.0389
9 6 3.0600 -1.0910 1.7185
10 6 5.2604 -1.0058 0.6754
11 8 6.1819 -0.3861 0.1799
12 6 5.3757 -2.4614 0.8786
13 6 4.4483 -3.2909 1.5480
14 7 4.9021 -4.5134 1.5136
15 7 6.1279 -4.5230 0.8388
16 6 6.9599 -5.7033 0.5919
17 6 7.9285 -5.8827 1.7323
18 1 7.9245 -5.1873 2.5586
19 6 8.8198 -6.9346 1.7208
20 7 8.8244 -7.7816 0.7148
21 14 10.0200 -7.1573 3.1348
22 1 10.8634 -8.3537 2.8844
23 1 9.2652 -7.3405 4.4005
24 1 10.8850 -5.9552 3.2438
25 6 6.4102 -3.2692 0.4507
26 6 7.6320 -2.8250 -0.3114
27 6 3.4054 1.3597 -0.6308
28 6 3.7647 0.4909 -1.8367
29 6 3.5498 1.7490 -2.6976
30 6 3.8622 2.5759 -1.4372
31 1 -0.3634 0.5137 -0.8899
32 1 -0.3633 -1.0277 0.0005
33 1 -0.3633 0.5138 0.8900
34 1 2.2973 1.1363 2.1885
35 1 2.7567 2.7530 1.5007
36 1 3.4279 -1.4769 2.6692
37 1 2.2218 -0.4181 1.8996
38 1 2.7313 -1.9205 1.0924
39 1 3.5235 -2.9699 2.0041
40 1 7.5136 -5.5695 -0.3375
41 1 6.3246 -6.5855 0.5125
42 1 8.2004 -7.6666 -0.0189
43 1 7.4329 -2.8808 -1.3816
44 1 7.8759 -1.7979 -0.0402
45 1 8.4711 -3.4752 -0.0636
46 1 4.7956 0.1369 -1.8290
47 1 3.0442 -0.3027 -2.0343
48 1 2.5257 1.8649 -3.0524
49 1 4.2887 1.8664 -3.4903
50 1 3.2196 3.4480 -1.3157
51 1 4.9205 2.8079 -1.3173
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001647397906.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 07:32:29
Heat of formation + Delta-G solvation = 43.649604 kcal
Electronic energy + Delta-G solvation = -32293.868643 eV
Core-core repulsion = 28196.914652 eV
Total energy + Delta-G solvation = -4096.953991 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 16.03 seconds
Orbital eigenvalues (eV)
-42.61486 -41.98094 -39.61489 -37.98940 -36.71173 -36.17807 -34.40993 -33.53019
-32.65040 -29.14135 -28.51973 -28.08011 -27.62296 -26.45258 -25.70245 -25.43595
-25.07336 -23.07023 -22.00908 -21.26327 -19.96590 -19.32179 -19.05203 -18.07891
-17.63615 -17.23386 -16.81688 -16.74155 -16.50218 -16.44112 -15.77346 -15.66128
-15.58340 -15.22260 -14.83241 -14.65808 -14.42925 -14.17063 -13.97914 -13.85361
-13.74769 -13.63632 -13.40876 -13.26662 -13.13393 -13.04376 -12.92688 -12.91309
-12.60870 -12.18766 -11.97751 -11.89714 -11.83098 -11.75455 -11.41438 -11.27492
-11.21574 -10.98197 -10.75174 -10.71520 -10.28065 -10.22588 -9.65637 -9.29732
-8.86543 -6.65393 0.60401 1.28117 1.48651 1.54410 1.55217 1.77201
2.06641 2.44598 2.49446 2.70028 2.94513 3.47427 3.52597 3.63134
3.66327 3.73834 3.85926 3.87045 4.01202 4.04795 4.13328 4.29447
4.36066 4.40366 4.44638 4.52272 4.52498 4.58047 4.64402 4.66408
4.70103 4.73086 4.78592 4.84346 4.89810 4.90319 4.95739 4.98330
5.02707 5.04645 5.07435 5.13790 5.18804 5.42598 5.47481 5.54798
5.59068 5.73855 5.80565 6.08811 6.29423 6.38659 6.51026 6.73667
7.11526 7.34201 8.50687
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.019194 B = 0.002711 C = 0.002595
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1458.475348 B =10327.435315 C =10785.561854
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.377 6.377
3 C 0.096 3.904
4 H 0.099 0.901
5 C -0.151 4.151
6 C 0.128 3.872
7 H 0.074 0.926
8 N -0.579 5.579
9 C 0.069 3.931
10 C 0.603 3.397
11 O -0.581 6.581
12 C -0.325 4.325
13 C 0.060 3.940
14 N -0.338 5.338
15 N -0.337 5.337
16 C 0.255 3.745
17 C -0.629 4.629
18 H 0.043 0.957
19 C -0.013 4.013
20 N -0.917 5.917
21 Si 1.119 2.881
22 H -0.273 1.273
23 H -0.274 1.274
24 H -0.269 1.269
25 C 0.142 3.858
26 C -0.088 4.088
27 C -0.119 4.119
28 C -0.122 4.122
29 C -0.133 4.133
30 C -0.094 4.094
31 H 0.046 0.954
32 H 0.088 0.912
33 H 0.058 0.942
34 H 0.095 0.905
35 H 0.127 0.873
36 H 0.060 0.940
37 H 0.115 0.885
38 H 0.064 0.936
39 H 0.237 0.763
40 H 0.043 0.957
41 H 0.027 0.973
42 H 0.260 0.740
43 H 0.089 0.911
44 H 0.100 0.900
45 H 0.067 0.933
46 H 0.052 0.948
47 H 0.051 0.949
48 H 0.091 0.909
49 H 0.064 0.936
50 H 0.096 0.904
51 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.554 23.932 -1.597 30.323
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 O -0.296 6.296
3 C 0.037 3.963
4 H 0.116 0.884
5 C -0.189 4.189
6 C 0.024 3.976
7 H 0.092 0.908
8 N -0.309 5.309
9 C -0.072 4.072
10 C 0.394 3.606
11 O -0.463 6.463
12 C -0.340 4.340
13 C -0.126 4.126
14 N -0.158 5.158
15 N -0.114 5.114
16 C 0.136 3.864
17 C -0.667 4.667
18 H 0.062 0.938
19 C -0.214 4.214
20 N -0.552 5.552
21 Si 0.939 3.061
22 H -0.198 1.198
23 H -0.200 1.200
24 H -0.194 1.194
25 C 0.007 3.993
26 C -0.146 4.146
27 C -0.121 4.121
28 C -0.160 4.160
29 C -0.170 4.170
30 C -0.132 4.132
31 H 0.065 0.935
32 H 0.107 0.893
33 H 0.077 0.923
34 H 0.113 0.887
35 H 0.145 0.855
36 H 0.079 0.921
37 H 0.133 0.867
38 H 0.082 0.918
39 H 0.252 0.748
40 H 0.061 0.939
41 H 0.045 0.955
42 H 0.070 0.930
43 H 0.107 0.893
44 H 0.119 0.881
45 H 0.086 0.914
46 H 0.071 0.929
47 H 0.070 0.930
48 H 0.110 0.890
49 H 0.082 0.918
50 H 0.115 0.885
51 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -16.935 21.733 -0.975 27.570
hybrid contribution -1.022 1.096 -1.078 1.846
sum -17.958 22.829 -2.053 29.118
Atomic orbital electron populations
1.22963 0.79751 1.03477 1.00996 1.88008 1.20876 1.26456 1.94266
1.22810 0.92598 0.85694 0.95151 0.88371 1.23927 0.93557 1.03062
0.98320 1.21807 0.98754 0.80656 0.96334 0.90840 1.47005 1.16421
1.09045 1.58444 1.22516 0.90912 0.98108 0.95694 1.17075 0.81876
0.84891 0.76754 1.90636 1.39814 1.68437 1.47443 1.20004 1.00278
0.95039 1.18679 1.25579 1.00616 0.88910 0.97497 1.77104 0.96851
1.23348 1.18485 1.48866 1.15650 1.07389 1.39500 1.19428 0.88394
0.80980 0.97591 1.22289 1.21106 1.16081 1.07242 0.93814 1.27320
0.99668 0.91187 1.03190 1.70938 1.37612 1.37284 1.09401 0.82901
0.74101 0.77282 0.71806 1.19789 1.19954 1.19365 1.21922 0.97095
0.84806 0.95520 1.20565 0.91781 1.03199 0.99099 1.23357 0.96593
0.98924 0.93217 1.22388 0.99866 0.96976 0.96784 1.22837 1.02126
0.95433 0.96632 1.22479 1.01695 0.95309 0.93720 0.93498 0.89339
0.92297 0.88653 0.85483 0.92129 0.86695 0.91779 0.74775 0.93924
0.95513 0.92999 0.89286 0.88105 0.91397 0.92918 0.93047 0.89041
0.91765 0.88523 0.90247
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.23 10.86 113.37 1.23 1.46 16
2 O -0.38 -6.00 6.88 -148.98 -1.02 -7.03 16
3 C 0.10 1.28 4.16 30.99 0.13 1.41 16
4 H 0.10 0.86 7.90 -2.39 -0.02 0.84 16
5 C -0.15 -1.84 7.20 31.23 0.22 -1.62 16
6 C 0.13 2.75 3.84 45.28 0.17 2.92 16
7 H 0.07 1.82 7.95 -2.39 -0.02 1.80 16
8 N -0.58 -15.37 2.79 -824.87 -2.30 -17.67 16
9 C 0.07 1.42 6.49 127.77 0.83 2.25 16
10 C 0.60 21.50 7.00 86.66 0.61 22.11 16
11 O -0.58 -23.32 13.85 -4.03 -0.06 -23.37 16
12 C -0.32 -12.86 6.04 -20.15 -0.12 -12.98 16
13 C 0.06 2.21 9.91 85.65 0.85 3.06 16
14 N -0.34 -15.55 12.50 -56.27 -0.70 -16.25 16
15 N -0.34 -16.54 3.56 -336.71 -1.20 -17.73 16
16 C 0.26 13.65 5.09 85.63 0.44 14.08 16
17 C -0.63 -36.16 9.39 25.60 0.24 -35.92 16
18 H 0.04 2.61 7.81 -2.91 -0.02 2.58 16
19 C -0.01 -0.74 5.46 84.66 0.46 -0.28 16
20 N -0.92 -54.14 13.65 21.45 0.29 -53.85 16
21 Si 1.12 49.74 29.90 68.60 2.05 51.79 16
22 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16
23 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16
24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16
25 C 0.14 6.31 7.00 42.14 0.30 6.61 16
26 C -0.09 -3.52 9.41 71.23 0.67 -2.85 16
27 C -0.12 -2.24 0.90 -52.21 -0.05 -2.29 16
28 C -0.12 -3.01 7.10 30.89 0.22 -2.79 16
29 C -0.13 -2.32 8.08 31.23 0.25 -2.07 16
30 C -0.09 -1.45 7.84 30.88 0.24 -1.21 16
31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16
32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16
33 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16
34 H 0.10 1.04 5.94 -2.39 -0.01 1.03 16
35 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16
36 H 0.06 1.20 6.69 -2.39 -0.02 1.18 16
37 H 0.12 1.72 3.83 -2.39 -0.01 1.71 16
38 H 0.06 1.43 6.20 -2.39 -0.01 1.42 16
39 H 0.24 6.37 4.17 -2.91 -0.01 6.36 16
40 H 0.04 2.25 7.49 -2.39 -0.02 2.24 16
41 H 0.03 1.51 8.01 -2.39 -0.02 1.49 16
42 H 0.26 15.34 7.22 -92.71 -0.67 14.67 16
43 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16
44 H 0.10 3.94 6.40 -2.39 -0.02 3.93 16
45 H 0.07 2.84 7.70 -2.39 -0.02 2.82 16
46 H 0.05 1.68 6.99 -2.39 -0.02 1.67 16
47 H 0.05 1.39 7.85 -2.39 -0.02 1.37 16
48 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16
49 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16
50 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16
51 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16
Total: -1.00 -74.11 395.66 4.79 -69.32
By element:
Atomic # 1 Polarization: 21.84 SS G_CDS: 1.04 Total: 22.89 kcal
Atomic # 6 Polarization: -14.78 SS G_CDS: 6.69 Total: -8.09 kcal
Atomic # 7 Polarization: -101.59 SS G_CDS: -3.91 Total: -105.50 kcal
Atomic # 8 Polarization: -29.32 SS G_CDS: -1.08 Total: -30.40 kcal
Atomic # 14 Polarization: 49.74 SS G_CDS: 2.05 Total: 51.79 kcal
Total: -74.11 4.79 -69.32 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001647397906.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 112.967 kcal
(2) G-P(sol) polarization free energy of solvation -74.111 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.856 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.317 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.650 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 16.03 seconds