Wall clock time and date at job start Wed Apr 1 2020 07:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30836 * 125.90172 * 2 1 4 4 N 1.40085 * 108.20461 * 179.97438 * 3 2 1 5 5 C 1.46509 * 126.03493 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47160 * 89.97190 * 5 4 3 7 7 H 1.08008 * 120.00219 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00007 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00052 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00195 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46767 * 59.99415 * 10 8 6 12 12 H 1.48499 * 109.47179 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47208 * 299.99769 * 10 8 6 14 14 C 1.34950 * 107.92662 * 359.75420 * 4 3 2 15 15 C 1.50696 * 126.12572 * 180.24375 * 14 4 3 16 16 C 1.35312 * 107.74363 * 0.39616 * 14 4 3 17 17 C 1.50700 * 126.03785 * 179.87376 * 16 14 4 18 18 C 1.52999 * 109.47260 * 269.71400 * 17 16 14 19 19 C 1.50700 * 109.47260 * 179.97438 * 18 17 16 20 20 O 1.21280 * 119.99918 * 359.97438 * 19 18 17 21 21 N 1.34779 * 119.99919 * 179.97438 * 19 18 17 22 22 C 1.46492 * 120.00085 * 179.97438 * 21 19 18 23 23 H 1.09007 * 115.57754 * 9.23390 * 22 21 19 24 24 C 1.53119 * 117.51692 * 223.46463 * 22 21 19 25 25 C 1.52462 * 117.51450 * 154.99758 * 22 21 19 26 26 C 1.53256 * 128.58268 * 349.85658 * 25 22 21 27 27 C 1.53889 * 86.98099 * 245.00445 * 26 25 22 28 28 O 1.42898 * 113.59010 * 89.64825 * 27 26 25 29 29 C 1.53249 * 128.58891 * 225.05000 * 25 22 21 30 30 H 1.08995 * 109.47010 * 270.02407 * 1 2 3 31 31 H 1.09000 * 109.46755 * 30.02414 * 1 2 3 32 32 H 1.09003 * 109.47434 * 150.02249 * 1 2 3 33 33 H 1.08998 * 109.46659 * 209.96768 * 5 4 3 34 34 H 1.08996 * 109.46811 * 329.97250 * 5 4 3 35 35 H 0.96996 * 120.00476 * 180.02562 * 9 8 6 36 36 H 1.09002 * 109.47287 * 270.17817 * 15 14 4 37 37 H 1.09001 * 109.47641 * 30.17788 * 15 14 4 38 38 H 1.08993 * 109.47406 * 150.17911 * 15 14 4 39 39 H 1.08994 * 109.47152 * 149.70961 * 17 16 14 40 40 H 1.09000 * 109.47037 * 29.71304 * 17 16 14 41 41 H 1.08995 * 109.47136 * 59.99235 * 18 17 16 42 42 H 1.09004 * 109.46711 * 300.00308 * 18 17 16 43 43 H 0.97002 * 119.99516 * 0.02562 * 21 19 18 44 44 H 1.08999 * 117.51711 * 145.10265 * 24 22 21 45 45 H 1.09004 * 117.51069 * 359.97438 * 24 22 21 46 46 H 1.09002 * 113.64750 * 359.54743 * 26 25 22 47 47 H 1.08999 * 113.64710 * 130.46206 * 26 25 22 48 48 H 1.08993 * 113.59137 * 220.47432 * 27 26 25 49 49 H 0.96699 * 114.00503 * 180.02562 * 28 27 26 50 50 H 1.09004 * 113.64908 * 229.44493 * 29 25 22 51 51 H 1.09004 * 113.64569 * 0.36484 * 29 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 0.0006 5 6 4.7900 1.5007 0.0013 6 6 5.1939 1.7981 1.4224 7 1 4.6271 1.3835 2.2430 8 6 6.2863 2.6005 1.6750 9 7 6.9761 3.1058 0.6758 10 14 6.7865 2.9699 3.4365 11 1 7.1044 1.6998 4.1374 12 1 7.9839 3.8483 3.4371 13 1 5.6693 3.6547 4.1351 14 6 3.6141 -0.7155 0.0065 15 6 4.8349 -1.5990 0.0143 16 6 2.3271 -1.1331 0.0006 17 6 1.8598 -2.5658 0.0013 18 6 1.7024 -3.0517 -1.4409 19 6 1.2358 -4.4846 -1.4402 20 8 1.0480 -5.0606 -0.3896 21 7 1.0271 -5.1259 -2.6071 22 6 0.5740 -6.5190 -2.6065 23 1 0.2786 -6.9173 -1.6358 24 6 1.2433 -7.4811 -3.5919 25 6 -0.1877 -7.0125 -3.8316 26 6 -0.7425 -6.1971 -5.0046 27 6 -2.1438 -6.6218 -4.5311 28 8 -2.7236 -5.7238 -3.5828 29 6 -1.4706 -7.8488 -3.8866 30 1 -0.3633 0.0004 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3634 -0.8902 -0.5135 33 1 5.6098 0.9978 -0.5117 34 1 4.5568 2.4330 -0.5129 35 1 7.7448 3.6700 0.8535 36 1 5.1345 -1.8139 -1.0114 37 1 5.6485 -1.0902 0.5314 38 1 4.6049 -2.5321 0.5286 39 1 0.9008 -2.6349 0.5147 40 1 2.5930 -3.1868 0.5159 41 1 2.6614 -2.9824 -1.9543 42 1 0.9693 -2.4305 -1.9556 43 1 1.1776 -4.6652 -3.4474 44 1 1.3881 -8.5121 -3.2693 45 1 2.0204 -7.0771 -4.2408 46 1 -0.5579 -5.1262 -4.9187 47 1 -0.4714 -6.5966 -5.9818 48 1 -2.8221 -6.8732 -5.3464 49 1 -3.6042 -5.9852 -3.2809 50 1 -1.4036 -8.7091 -4.5527 51 1 -1.8690 -8.1034 -2.9045 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650069572.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:22:31 Heat of formation + Delta-G solvation = 18.702537 kcal Electronic energy + Delta-G solvation = -29939.411681 eV Core-core repulsion = 25841.375904 eV Total energy + Delta-G solvation = -4098.035777 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.66250 -40.46390 -39.23343 -36.57970 -34.37103 -34.08312 -33.33645 -32.45479 -31.85587 -30.12850 -28.92565 -26.79051 -26.28968 -25.85400 -24.11843 -22.82562 -22.50347 -21.81522 -20.43953 -19.21182 -18.76682 -18.60254 -17.57323 -17.04877 -16.67920 -16.52117 -15.62692 -15.50421 -15.26194 -15.01139 -14.53688 -14.34061 -14.00898 -13.82855 -13.58361 -13.34897 -13.02010 -12.88285 -12.76293 -12.62074 -12.52088 -12.50215 -12.25781 -12.07213 -11.89583 -11.79527 -11.58537 -11.32502 -11.27989 -11.18405 -10.94900 -10.83093 -10.77709 -10.68839 -10.46612 -10.24526 -10.04461 -9.84269 -9.72278 -9.56397 -8.90159 -8.63465 -8.14733 -7.44428 -6.25194 -4.32717 2.56174 2.76417 2.91149 3.24114 3.27696 3.32062 3.42746 3.44583 3.65146 3.70065 4.02922 4.19601 4.23511 4.30664 4.49247 4.55817 4.75329 4.92150 5.08173 5.17555 5.23689 5.28244 5.31497 5.31721 5.38445 5.40524 5.42630 5.57663 5.60539 5.65024 5.72390 5.79594 5.82780 5.90132 5.99909 6.00997 6.04457 6.09153 6.28461 6.31455 6.41847 6.53365 6.57962 6.91740 7.04004 7.14132 7.24954 7.37053 7.54965 7.67543 7.89879 8.08733 8.18545 8.69207 8.77617 9.33747 10.82224 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021443 B = 0.001888 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.444354 B =14830.202391 C =15326.595103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.051 3.949 3 N -0.297 5.297 4 N -0.326 5.326 5 C 0.257 3.743 6 C -0.536 4.536 7 H 0.063 0.937 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.094 3.906 15 C -0.091 4.091 16 C -0.268 4.268 17 C -0.010 4.010 18 C -0.132 4.132 19 C 0.520 3.480 20 O -0.538 6.538 21 N -0.705 5.705 22 C 0.124 3.876 23 H 0.136 0.864 24 C -0.180 4.180 25 C -0.165 4.165 26 C -0.095 4.095 27 C 0.084 3.916 28 O -0.545 6.545 29 C -0.130 4.130 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.268 0.732 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.401 0.599 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.077 0.923 47 H 0.098 0.902 48 H 0.069 0.931 49 H 0.380 0.620 50 H 0.093 0.907 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.377 -22.516 -13.406 30.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.114 4.114 3 N -0.121 5.121 4 N -0.105 5.105 5 C 0.140 3.860 6 C -0.575 4.575 7 H 0.082 0.918 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.199 1.199 14 C -0.038 4.038 15 C -0.149 4.149 16 C -0.280 4.280 17 C -0.049 4.049 18 C -0.173 4.173 19 C 0.308 3.692 20 O -0.414 6.414 21 N -0.354 5.354 22 C 0.017 3.983 23 H 0.153 0.847 24 C -0.218 4.218 25 C -0.166 4.166 26 C -0.132 4.132 27 C 0.024 3.976 28 O -0.350 6.350 29 C -0.168 4.168 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.235 0.765 44 H 0.120 0.880 45 H 0.117 0.883 46 H 0.096 0.904 47 H 0.117 0.883 48 H 0.087 0.913 49 H 0.227 0.773 50 H 0.111 0.889 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.591 -21.042 -12.760 28.609 hybrid contribution 0.057 -0.636 0.462 0.788 sum -14.534 -21.678 -12.299 28.852 Atomic orbital electron populations 1.20021 0.88051 1.02083 1.02127 1.21951 0.96108 0.90763 1.02533 1.77263 0.87532 1.22676 1.24633 1.49249 1.05743 1.04189 1.51363 1.19639 0.77964 0.89574 0.98855 1.21282 1.13029 1.31785 0.91380 0.91849 1.24929 0.95733 0.95001 0.98126 1.69906 1.19009 1.32975 1.31100 0.86414 0.78009 0.78493 0.83775 1.19930 1.20955 1.19947 1.20765 0.96118 0.85661 1.01227 1.20399 0.94424 0.97829 1.02295 1.19356 0.91374 0.95078 1.22213 1.19390 1.01622 0.90841 0.93058 1.21749 1.03029 0.90990 1.01486 1.21057 0.76036 0.89123 0.82992 1.90682 1.50969 1.68558 1.31212 1.45406 1.68821 1.12042 1.09170 1.21359 0.99251 0.82468 0.95177 0.84660 1.23443 0.94745 1.00279 1.03360 1.22629 0.92824 1.01890 0.99266 1.22528 0.93327 1.00674 0.96691 1.22575 0.94016 0.90014 0.90975 1.86532 1.36402 1.49986 1.62087 1.23216 0.94446 0.97089 1.02033 0.91399 0.91657 0.91402 0.93119 0.93087 0.92215 0.91303 0.89998 0.90673 0.91275 0.91375 0.89005 0.88925 0.76504 0.87957 0.88301 0.90440 0.88342 0.91327 0.77259 0.88910 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.12 36.00 0.36 -0.58 16 2 C 0.05 0.99 7.22 -82.41 -0.59 0.39 16 3 N -0.30 -6.94 12.58 33.67 0.42 -6.51 16 4 N -0.33 -7.70 3.60 -58.31 -0.21 -7.91 16 5 C 0.26 6.66 5.82 -5.19 -0.03 6.63 16 6 C -0.54 -14.95 9.39 -34.44 -0.32 -15.27 16 7 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 8 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 9 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 10 Si 0.91 21.37 29.54 -169.99 -5.02 16.35 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 14 C 0.09 1.89 6.93 -82.27 -0.57 1.32 16 15 C -0.09 -1.52 9.68 36.00 0.35 -1.17 16 16 C -0.27 -4.89 5.35 -105.05 -0.56 -5.45 16 17 C -0.01 -0.15 4.45 -27.88 -0.12 -0.27 16 18 C -0.13 -1.58 5.68 -27.88 -0.16 -1.74 16 19 C 0.52 6.53 7.83 -10.98 -0.09 6.44 16 20 O -0.54 -8.71 15.55 5.56 0.09 -8.63 16 21 N -0.70 -6.86 5.55 -54.02 -0.30 -7.16 16 22 C 0.12 1.16 6.43 -68.15 -0.44 0.72 16 23 H 0.14 1.51 7.40 -51.93 -0.38 1.13 16 24 C -0.18 -1.26 10.46 -26.94 -0.28 -1.54 16 25 C -0.16 -1.17 2.96 -154.80 -0.46 -1.63 16 26 C -0.09 -0.59 7.90 -26.14 -0.21 -0.80 16 27 C 0.08 0.50 5.28 -25.70 -0.14 0.37 16 28 O -0.54 -4.26 13.60 -35.23 -0.48 -4.74 16 29 C -0.13 -0.75 7.93 -26.04 -0.21 -0.95 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.84 7.92 -51.93 -0.41 0.43 16 33 H 0.05 1.30 7.67 -51.93 -0.40 0.90 16 34 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 35 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.51 7.74 -51.93 -0.40 1.11 16 38 H 0.07 1.09 7.14 -51.93 -0.37 0.72 16 39 H 0.07 1.05 7.88 -51.93 -0.41 0.64 16 40 H 0.07 1.04 7.09 -51.93 -0.37 0.67 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.40 3.03 8.53 -40.82 -0.35 2.68 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.08 0.56 7.85 -51.93 -0.41 0.15 16 47 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.38 1.39 9.12 45.56 0.42 1.81 16 50 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 426.05 15.07 6.42 6.42 Total: -1.00 -34.54 426.05 -9.60 -44.15 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -7.70 Total: 4.40 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -3.56 Total: -11.84 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.65 Total: -46.11 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.39 Total: -13.37 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -34.54 -9.60 -44.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650069572.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.848 kcal (2) G-P(sol) polarization free energy of solvation -34.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds