Wall clock time and date at job start Wed Apr 1 2020 07:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30836 * 125.90172 * 2 1 4 4 N 1.40085 * 108.20461 * 179.97438 * 3 2 1 5 5 C 1.46509 * 126.03493 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47160 * 89.97190 * 5 4 3 7 7 H 1.08008 * 120.00219 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00007 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00052 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00195 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46767 * 59.99415 * 10 8 6 12 12 H 1.48499 * 109.47179 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47208 * 299.99769 * 10 8 6 14 14 C 1.34950 * 107.92662 * 359.75420 * 4 3 2 15 15 C 1.50696 * 126.12572 * 180.24375 * 14 4 3 16 16 C 1.35312 * 107.74363 * 0.39616 * 14 4 3 17 17 C 1.50700 * 126.03785 * 179.87376 * 16 14 4 18 18 C 1.52999 * 109.47260 * 269.71400 * 17 16 14 19 19 C 1.50700 * 109.47260 * 179.97438 * 18 17 16 20 20 O 1.21280 * 119.99918 * 359.97438 * 19 18 17 21 21 N 1.34779 * 119.99919 * 179.97438 * 19 18 17 22 22 C 1.46492 * 120.00085 * 179.97438 * 21 19 18 23 23 H 1.09007 * 115.57754 * 9.23390 * 22 21 19 24 24 C 1.53119 * 117.51692 * 223.46463 * 22 21 19 25 25 C 1.52462 * 117.51450 * 154.99758 * 22 21 19 26 26 C 1.53256 * 128.58268 * 349.85658 * 25 22 21 27 27 C 1.53889 * 86.98099 * 245.00445 * 26 25 22 28 28 O 1.42898 * 113.59010 * 89.64825 * 27 26 25 29 29 C 1.53249 * 128.58891 * 225.05000 * 25 22 21 30 30 H 1.08995 * 109.47010 * 270.02407 * 1 2 3 31 31 H 1.09000 * 109.46755 * 30.02414 * 1 2 3 32 32 H 1.09003 * 109.47434 * 150.02249 * 1 2 3 33 33 H 1.08998 * 109.46659 * 209.96768 * 5 4 3 34 34 H 1.08996 * 109.46811 * 329.97250 * 5 4 3 35 35 H 0.96996 * 120.00476 * 180.02562 * 9 8 6 36 36 H 1.09002 * 109.47287 * 270.17817 * 15 14 4 37 37 H 1.09001 * 109.47641 * 30.17788 * 15 14 4 38 38 H 1.08993 * 109.47406 * 150.17911 * 15 14 4 39 39 H 1.08994 * 109.47152 * 149.70961 * 17 16 14 40 40 H 1.09000 * 109.47037 * 29.71304 * 17 16 14 41 41 H 1.08995 * 109.47136 * 59.99235 * 18 17 16 42 42 H 1.09004 * 109.46711 * 300.00308 * 18 17 16 43 43 H 0.97002 * 119.99516 * 0.02562 * 21 19 18 44 44 H 1.08999 * 117.51711 * 145.10265 * 24 22 21 45 45 H 1.09004 * 117.51069 * 359.97438 * 24 22 21 46 46 H 1.09002 * 113.64750 * 359.54743 * 26 25 22 47 47 H 1.08999 * 113.64710 * 130.46206 * 26 25 22 48 48 H 1.08993 * 113.59137 * 220.47432 * 27 26 25 49 49 H 0.96699 * 114.00503 * 180.02562 * 28 27 26 50 50 H 1.09004 * 113.64908 * 229.44493 * 29 25 22 51 51 H 1.09004 * 113.64569 * 0.36484 * 29 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 0.0006 5 6 4.7900 1.5007 0.0013 6 6 5.1939 1.7981 1.4224 7 1 4.6271 1.3835 2.2430 8 6 6.2863 2.6005 1.6750 9 7 6.9761 3.1058 0.6758 10 14 6.7865 2.9699 3.4365 11 1 7.1044 1.6998 4.1374 12 1 7.9839 3.8483 3.4371 13 1 5.6693 3.6547 4.1351 14 6 3.6141 -0.7155 0.0065 15 6 4.8349 -1.5990 0.0143 16 6 2.3271 -1.1331 0.0006 17 6 1.8598 -2.5658 0.0013 18 6 1.7024 -3.0517 -1.4409 19 6 1.2358 -4.4846 -1.4402 20 8 1.0480 -5.0606 -0.3896 21 7 1.0271 -5.1259 -2.6071 22 6 0.5740 -6.5190 -2.6065 23 1 0.2786 -6.9173 -1.6358 24 6 1.2433 -7.4811 -3.5919 25 6 -0.1877 -7.0125 -3.8316 26 6 -0.7425 -6.1971 -5.0046 27 6 -2.1438 -6.6218 -4.5311 28 8 -2.7236 -5.7238 -3.5828 29 6 -1.4706 -7.8488 -3.8866 30 1 -0.3633 0.0004 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3634 -0.8902 -0.5135 33 1 5.6098 0.9978 -0.5117 34 1 4.5568 2.4330 -0.5129 35 1 7.7448 3.6700 0.8535 36 1 5.1345 -1.8139 -1.0114 37 1 5.6485 -1.0902 0.5314 38 1 4.6049 -2.5321 0.5286 39 1 0.9008 -2.6349 0.5147 40 1 2.5930 -3.1868 0.5159 41 1 2.6614 -2.9824 -1.9543 42 1 0.9693 -2.4305 -1.9556 43 1 1.1776 -4.6652 -3.4474 44 1 1.3881 -8.5121 -3.2693 45 1 2.0204 -7.0771 -4.2408 46 1 -0.5579 -5.1262 -4.9187 47 1 -0.4714 -6.5966 -5.9818 48 1 -2.8221 -6.8732 -5.3464 49 1 -3.6042 -5.9852 -3.2809 50 1 -1.4036 -8.7091 -4.5527 51 1 -1.8690 -8.1034 -2.9045 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650069572.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:22:30 Heat of formation + Delta-G solvation = -5.172375 kcal Electronic energy + Delta-G solvation = -29940.446975 eV Core-core repulsion = 25841.375904 eV Total energy + Delta-G solvation = -4099.071071 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.15521 -41.20552 -40.07987 -37.20050 -36.09346 -34.85288 -34.79834 -34.18379 -32.62685 -31.54663 -30.47537 -28.13799 -27.61902 -26.74529 -25.52371 -24.08344 -23.28114 -22.75494 -21.38652 -20.31422 -20.14581 -19.74252 -18.82307 -18.19481 -17.86730 -17.25427 -17.21876 -16.50513 -16.22881 -16.14486 -15.87028 -15.49791 -15.07930 -14.91464 -14.67809 -14.44632 -14.27005 -14.04666 -13.98126 -13.84953 -13.54408 -13.41777 -13.32945 -13.24610 -13.16281 -13.03415 -12.86636 -12.75858 -12.62376 -12.58408 -12.54974 -12.21336 -11.87982 -11.79327 -11.73139 -11.38805 -11.16329 -10.98910 -10.87292 -10.75633 -10.48152 -9.83392 -9.64310 -9.03070 -8.35159 -6.53052 1.17360 1.35637 1.37164 1.46283 1.62898 1.86398 1.94359 2.19383 2.32770 2.87401 2.94024 3.28428 3.50868 3.63797 3.76915 3.77374 3.90043 3.94704 3.96218 4.06184 4.23882 4.26430 4.33289 4.52402 4.58086 4.61704 4.71056 4.74106 4.77727 4.81422 4.81601 4.85388 4.86927 4.87248 4.90634 4.96533 4.99345 5.05102 5.13153 5.14489 5.22818 5.30740 5.32301 5.43924 5.49616 5.55569 5.57691 5.79985 6.04958 6.31859 6.55968 6.62063 6.93768 7.11459 7.18230 7.28933 8.70565 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021443 B = 0.001888 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.444354 B =14830.202391 C =15326.595103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.054 3.946 3 N -0.349 5.349 4 N -0.355 5.355 5 C 0.276 3.724 6 C -0.554 4.554 7 H 0.046 0.954 8 C 0.022 3.978 9 N -0.917 5.917 10 Si 0.970 3.030 11 H -0.265 1.265 12 H -0.271 1.271 13 H -0.276 1.276 14 C 0.079 3.921 15 C -0.087 4.087 16 C -0.258 4.258 17 C -0.003 4.003 18 C -0.123 4.123 19 C 0.521 3.479 20 O -0.581 6.581 21 N -0.690 5.690 22 C 0.092 3.908 23 H 0.110 0.890 24 C -0.164 4.164 25 C -0.160 4.160 26 C -0.096 4.096 27 C 0.079 3.921 28 O -0.573 6.573 29 C -0.126 4.126 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.047 0.953 34 H 0.019 0.981 35 H 0.274 0.726 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.412 0.588 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.066 0.934 47 H 0.121 0.879 48 H 0.092 0.908 49 H 0.395 0.605 50 H 0.114 0.886 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.222 -24.573 -14.512 32.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 N -0.173 5.173 4 N -0.136 5.136 5 C 0.157 3.843 6 C -0.592 4.592 7 H 0.065 0.935 8 C -0.179 4.179 9 N -0.555 5.555 10 Si 0.794 3.206 11 H -0.190 1.190 12 H -0.195 1.195 13 H -0.202 1.202 14 C -0.050 4.050 15 C -0.145 4.145 16 C -0.269 4.269 17 C -0.042 4.042 18 C -0.163 4.163 19 C 0.310 3.690 20 O -0.461 6.461 21 N -0.340 5.340 22 C -0.015 4.015 23 H 0.128 0.872 24 C -0.202 4.202 25 C -0.161 4.161 26 C -0.133 4.133 27 C 0.020 3.980 28 O -0.381 6.381 29 C -0.164 4.164 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.065 0.935 34 H 0.037 0.963 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.249 0.751 44 H 0.128 0.872 45 H 0.126 0.874 46 H 0.084 0.916 47 H 0.139 0.861 48 H 0.109 0.891 49 H 0.244 0.756 50 H 0.132 0.868 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.456 -23.130 -13.916 31.105 hybrid contribution 0.205 -0.081 0.748 0.780 sum -15.251 -23.211 -13.169 30.737 Atomic orbital electron populations 1.20197 0.84805 1.03784 1.03314 1.22767 0.98071 0.90220 1.00009 1.77200 0.87858 1.24969 1.27284 1.49013 1.05296 1.05130 1.54121 1.19121 0.78975 0.88758 0.97485 1.21405 1.13469 1.32510 0.91847 0.93535 1.25745 0.95438 0.94449 1.02285 1.69989 1.19330 1.33184 1.33042 0.85426 0.77812 0.78678 0.78700 1.19018 1.19535 1.20164 1.21448 0.98167 0.84695 1.00730 1.20479 0.92354 0.97750 1.03899 1.19698 0.90423 0.96417 1.20387 1.19347 1.01263 0.88458 0.95134 1.21622 1.04253 0.90832 0.99598 1.21058 0.75696 0.89183 0.83070 1.90670 1.53205 1.69446 1.32759 1.45243 1.67550 1.12304 1.08883 1.21371 1.02299 0.82522 0.95275 0.87181 1.23477 0.95068 0.99949 1.01738 1.22726 0.93409 1.01944 0.98013 1.22662 0.93434 0.99940 0.97281 1.22732 0.94393 0.89611 0.91242 1.86480 1.37753 1.51087 1.62764 1.23280 0.93341 0.97660 1.02119 0.90344 0.91047 0.88615 0.93494 0.96267 0.91708 0.88825 0.92265 0.88330 0.91316 0.91706 0.87609 0.87535 0.75105 0.87167 0.87366 0.91558 0.86073 0.89074 0.75567 0.86772 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.74 10.12 71.23 0.72 -1.02 16 2 C 0.05 2.08 7.22 43.10 0.31 2.39 16 3 N -0.35 -16.73 12.58 -47.39 -0.60 -17.32 16 4 N -0.36 -17.35 3.60 -338.40 -1.22 -18.57 16 5 C 0.28 14.98 5.82 85.63 0.50 15.47 16 6 C -0.55 -31.95 9.39 25.60 0.24 -31.71 16 7 H 0.05 2.78 7.81 -2.91 -0.02 2.75 16 8 C 0.02 1.23 5.46 84.65 0.46 1.69 16 9 N -0.92 -52.81 13.29 21.45 0.28 -52.53 16 10 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 12 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 14 C 0.08 3.21 6.93 41.40 0.29 3.49 16 15 C -0.09 -2.86 9.68 71.23 0.69 -2.17 16 16 C -0.26 -9.19 5.35 -20.14 -0.11 -9.30 16 17 C 0.00 -0.09 4.45 29.85 0.13 0.05 16 18 C -0.12 -2.70 5.68 29.85 0.17 -2.53 16 19 C 0.52 12.48 7.83 87.66 0.69 13.17 16 20 O -0.58 -18.69 15.55 -3.03 -0.05 -18.74 16 21 N -0.69 -12.51 5.55 -443.20 -2.46 -14.97 16 22 C 0.09 1.63 6.43 44.85 0.29 1.92 16 23 H 0.11 2.53 7.40 -2.38 -0.02 2.51 16 24 C -0.16 -1.96 10.46 30.46 0.32 -1.65 16 25 C -0.16 -1.96 2.96 -52.37 -0.15 -2.11 16 26 C -0.10 -0.95 7.90 30.98 0.24 -0.71 16 27 C 0.08 0.76 5.28 31.26 0.17 0.93 16 28 O -0.57 -8.15 13.60 -148.98 -2.03 -10.18 16 29 C -0.13 -1.17 7.93 31.04 0.25 -0.92 16 30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 32 H 0.10 2.12 7.92 -2.39 -0.02 2.10 16 33 H 0.05 2.52 7.67 -2.39 -0.02 2.50 16 34 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 36 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.06 2.22 7.74 -2.39 -0.02 2.20 16 38 H 0.10 2.73 7.14 -2.39 -0.02 2.72 16 39 H 0.07 1.97 7.88 -2.39 -0.02 1.95 16 40 H 0.06 1.90 7.09 -2.39 -0.02 1.88 16 41 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.41 5.42 8.53 -92.71 -0.79 4.63 16 44 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 46 H 0.07 0.82 7.85 -2.39 -0.02 0.80 16 47 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.39 2.43 9.12 -74.06 -0.68 1.75 16 50 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 51 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -77.56 426.05 0.65 -76.91 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -0.52 Total: 22.27 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: 5.20 Total: -13.00 kcal Atomic # 7 Polarization: -99.40 SS G_CDS: -3.99 Total: -103.38 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -2.07 Total: -28.92 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -77.56 0.65 -76.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650069572.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.740 kcal (2) G-P(sol) polarization free energy of solvation -77.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds