Wall clock time and date at job start Wed Apr 1 2020 04:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38621 * 120.75528 * 2 1 4 4 C 1.38558 * 119.35316 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.55166 * 180.02562 * 4 3 2 6 6 N 1.31523 * 120.90380 * 359.97438 * 4 3 2 7 7 C 1.32723 * 121.64000 * 0.02562 * 6 4 3 8 8 C 1.48174 * 119.71998 * 179.97438 * 7 6 4 9 9 O 1.21515 * 119.99395 * 172.92176 * 8 7 6 10 10 N 1.34771 * 120.00052 * 352.92783 * 8 7 6 11 11 C 1.46922 * 120.63148 * 169.79230 * 10 8 7 12 12 C 1.53192 * 108.77878 * 126.36454 * 11 10 8 13 13 C 1.53036 * 109.31070 * 54.63479 * 12 11 10 14 14 C 1.53035 * 109.54339 * 298.63368 * 13 12 11 15 15 H 1.08996 * 109.52454 * 301.40399 * 14 13 12 16 16 N 1.46493 * 109.50415 * 181.31640 * 14 13 12 17 17 C 1.36942 * 119.99705 * 300.16572 * 16 14 13 18 18 H 1.07998 * 120.00308 * 36.55390 * 17 16 14 19 19 C 1.38813 * 119.99730 * 216.82587 * 17 16 14 20 20 N 1.31623 * 120.00251 * 23.52689 * 19 17 16 21 21 Si 1.86802 * 119.99984 * 203.52871 * 19 17 16 22 22 H 1.48504 * 109.47004 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47171 * 119.99852 * 21 19 17 24 24 H 1.48494 * 109.47359 * 240.00078 * 21 19 17 25 25 C 1.46497 * 120.00086 * 120.16148 * 16 14 13 26 26 C 1.53001 * 109.47173 * 274.76918 * 25 16 14 27 27 O 1.42905 * 109.46861 * 65.00070 * 26 25 16 28 28 C 1.46929 * 120.63221 * 349.76424 * 10 8 7 29 29 C 1.38591 * 120.75617 * 180.25224 * 2 1 3 30 30 H 1.09005 * 109.47407 * 90.00131 * 1 2 3 31 31 H 1.09003 * 109.47378 * 210.00506 * 1 2 3 32 32 H 1.08998 * 109.47221 * 330.00354 * 1 2 3 33 33 H 1.08002 * 120.32616 * 359.97438 * 3 2 1 34 34 H 1.08988 * 109.47401 * 269.97808 * 5 4 3 35 35 H 1.09008 * 109.46853 * 29.97877 * 5 4 3 36 36 H 1.09003 * 109.47266 * 149.97184 * 5 4 3 37 37 H 1.08999 * 109.58684 * 246.15379 * 11 10 8 38 38 H 1.09000 * 109.58719 * 6.57821 * 11 10 8 39 39 H 1.08999 * 109.49658 * 174.58642 * 12 11 10 40 40 H 1.09004 * 109.49973 * 294.65108 * 12 11 10 41 41 H 1.09005 * 109.45651 * 178.61124 * 13 12 11 42 42 H 1.09004 * 109.45729 * 58.66069 * 13 12 11 43 43 H 0.96992 * 120.00303 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.46912 * 34.77259 * 25 16 14 45 45 H 1.09005 * 109.46982 * 154.77355 * 25 16 14 46 46 H 1.08998 * 109.46998 * 185.00151 * 26 25 16 47 47 H 1.09000 * 109.47111 * 304.99775 * 26 25 16 48 48 H 0.96697 * 113.99685 * 179.97438 * 27 26 25 49 49 H 1.09000 * 109.58754 * 113.84662 * 28 10 8 50 50 H 1.08994 * 109.70028 * 353.48979 * 28 10 8 51 51 H 1.08004 * 120.46908 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.1913 0.0000 4 6 3.6010 1.1574 0.0005 5 6 4.3761 2.4498 0.0011 6 7 4.2487 0.0126 0.0016 7 6 3.6081 -1.1498 0.0016 8 6 4.3806 -2.4142 0.0022 9 8 3.8060 -3.4770 0.1319 10 7 5.7204 -2.3854 -0.1410 11 6 6.5229 -3.5964 0.0787 12 6 7.3931 -3.8423 -1.1579 13 6 8.2172 -2.5874 -1.4545 14 6 7.2778 -1.4161 -1.7503 15 1 6.6411 -1.6652 -2.5992 16 7 8.0676 -0.2231 -2.0649 17 6 8.9461 0.2792 -1.1423 18 1 9.5067 -0.3923 -0.5089 19 6 9.1120 1.6517 -1.0175 20 7 8.1559 2.4684 -1.4067 21 14 10.6922 2.3398 -0.2971 22 1 11.6013 1.2214 0.0607 23 1 11.3532 3.2145 -1.2987 24 1 10.3782 3.1305 0.9200 25 6 7.9176 0.4325 -3.3664 26 6 8.8250 -0.2526 -4.3901 27 8 8.3857 -1.5975 -4.5914 28 6 6.4062 -1.1427 -0.5204 29 6 2.2157 -1.1910 -0.0052 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6936 2.1366 -0.0004 34 1 4.5638 2.7614 -1.0263 35 1 3.7993 3.2191 0.5146 36 1 5.3259 2.3036 0.5158 37 1 7.1599 -3.4590 0.9524 38 1 5.8623 -4.4490 0.2360 39 1 8.0629 -4.6815 -0.9702 40 1 6.7554 -4.0698 -2.0122 41 1 8.8556 -2.7683 -2.3193 42 1 8.8365 -2.3470 -0.5903 43 1 8.2720 3.4274 -1.3198 44 1 6.8803 0.3584 -3.6931 45 1 8.1968 1.4825 -3.2786 46 1 8.7809 0.2893 -5.3348 47 1 9.8507 -0.2567 -4.0212 48 1 8.9163 -2.0931 -5.2300 49 1 7.0338 -0.8052 0.3044 50 1 5.6702 -0.3745 -0.7576 51 1 1.6958 -2.1376 -0.0098 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656776105.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:30 Heat of formation + Delta-G solvation = -16.239477 kcal Electronic energy + Delta-G solvation = -32829.566963 eV Core-core repulsion = 28730.015987 eV Total energy + Delta-G solvation = -4099.550977 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 3.48 seconds Orbital eigenvalues (eV) -40.66642 -39.04454 -37.37318 -36.13281 -34.52867 -34.21066 -32.77890 -31.85771 -31.12679 -29.53483 -27.98383 -27.33055 -27.05569 -25.47192 -24.07364 -23.43246 -22.02235 -21.03859 -20.56760 -19.80552 -18.76107 -17.04443 -16.83342 -16.32187 -16.00635 -15.84744 -15.41341 -15.17694 -14.68281 -14.42826 -14.16605 -13.97482 -13.59869 -13.52015 -13.36831 -13.24645 -13.10365 -12.87272 -12.72127 -12.64821 -12.34684 -12.28778 -11.91779 -11.74684 -11.65079 -11.52286 -11.20897 -11.04300 -10.98473 -10.63345 -10.51601 -10.37135 -10.15838 -10.04162 -9.87187 -9.78781 -9.54519 -9.41467 -9.15709 -8.79525 -8.55277 -8.28098 -7.98755 -6.52031 -5.79774 -3.30468 0.86234 1.33047 3.02204 3.33449 3.40405 3.43755 3.47076 4.03887 4.33280 4.48958 4.63985 4.73048 5.07729 5.13548 5.16153 5.21873 5.31407 5.40530 5.41925 5.50321 5.53122 5.60826 5.72512 5.75696 5.78911 5.85263 6.02498 6.08342 6.09649 6.15932 6.19008 6.24535 6.29789 6.33921 6.43130 6.49445 6.54467 6.57972 6.69351 6.77222 6.84255 6.96308 7.06641 7.17765 7.35187 7.48931 7.57982 7.85296 7.92210 8.09438 8.33216 8.51192 8.57085 9.21341 9.84588 10.45796 11.21193 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009499 B = 0.004567 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.857574 B = 6129.266330 C = 7532.123322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.051 4.051 3 C -0.159 4.159 4 C 0.137 3.863 5 C -0.102 4.102 6 N -0.434 5.434 7 C 0.091 3.909 8 C 0.566 3.434 9 O -0.557 6.557 10 N -0.582 5.582 11 C 0.110 3.890 12 C -0.128 4.128 13 C -0.123 4.123 14 C 0.175 3.825 15 H 0.050 0.950 16 N -0.567 5.567 17 C -0.251 4.251 18 H 0.060 0.940 19 C 0.015 3.985 20 N -0.882 5.882 21 Si 0.887 3.113 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.156 3.844 26 C 0.054 3.946 27 O -0.567 6.567 28 C 0.068 3.932 29 C -0.129 4.129 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.135 0.865 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.252 0.748 44 H 0.026 0.974 45 H 0.103 0.897 46 H 0.021 0.979 47 H 0.040 0.960 48 H 0.355 0.645 49 H 0.069 0.931 50 H 0.143 0.857 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.612 -2.845 -0.263 10.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.059 4.059 3 C -0.179 4.179 4 C -0.002 4.002 5 C -0.159 4.159 6 N -0.147 5.147 7 C -0.046 4.046 8 C 0.353 3.647 9 O -0.436 6.436 10 N -0.312 5.312 11 C -0.012 4.012 12 C -0.167 4.167 13 C -0.163 4.163 14 C 0.067 3.933 15 H 0.068 0.932 16 N -0.286 5.286 17 C -0.381 4.381 18 H 0.078 0.922 19 C -0.186 4.186 20 N -0.524 5.524 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.218 1.218 25 C 0.029 3.971 26 C -0.026 4.026 27 O -0.369 6.369 28 C -0.054 4.054 29 C -0.150 4.150 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.153 0.847 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.045 0.955 45 H 0.121 0.879 46 H 0.039 0.961 47 H 0.059 0.941 48 H 0.199 0.801 49 H 0.088 0.912 50 H 0.160 0.840 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.446 -3.028 0.276 9.923 hybrid contribution 0.677 0.386 -0.131 0.790 sum -8.769 -2.642 0.145 9.160 Atomic orbital electron populations 1.20794 0.90047 1.03233 1.02865 1.20267 0.96769 0.92637 0.96224 1.22048 0.94939 0.98590 1.02371 1.21675 0.90988 0.94588 0.92936 1.20733 1.00514 0.90460 1.04210 1.67844 1.38200 0.97540 1.11095 1.21238 0.91510 0.92454 0.99445 1.17934 0.82263 0.87132 0.77365 1.90697 1.69860 1.30450 1.52636 1.48217 1.05211 1.12794 1.64966 1.21629 0.93920 0.87776 0.97910 1.21880 0.98444 0.98907 0.97468 1.21924 0.98688 0.94223 1.01446 1.20591 0.90854 0.87652 0.94201 0.93209 1.43641 1.44771 1.28885 1.11351 1.18994 1.14713 0.89269 1.15142 0.92247 1.25062 0.97144 0.97080 0.99277 1.70056 1.29845 1.02391 1.50155 0.86481 0.84514 0.78883 0.78410 1.20279 1.21691 1.21810 1.20949 0.94850 0.98210 0.83054 1.23206 0.99825 0.81966 0.97614 1.86612 1.58640 1.26113 1.65582 1.23663 0.98396 0.84641 0.98729 1.21870 0.93754 0.99180 1.00181 0.90538 0.90989 0.91037 0.84709 0.89515 0.91536 0.89143 0.91738 0.89927 0.91826 0.92183 0.91943 0.92431 0.93819 0.95549 0.87903 0.96111 0.94139 0.80112 0.91243 0.84025 0.83990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.06 36.00 0.36 -0.60 16 2 C -0.05 -0.64 5.91 -104.35 -0.62 -1.26 16 3 C -0.16 -2.05 9.45 -39.32 -0.37 -2.42 16 4 C 0.14 2.17 6.78 -82.60 -0.56 1.61 16 5 C -0.10 -1.53 10.17 36.01 0.37 -1.17 16 6 N -0.43 -8.01 6.04 -6.06 -0.04 -8.05 16 7 C 0.09 1.64 6.59 -83.01 -0.55 1.10 16 8 C 0.57 11.06 7.64 -12.18 -0.09 10.97 16 9 O -0.56 -11.47 15.80 5.35 0.08 -11.39 16 10 N -0.58 -11.21 2.97 -173.76 -0.52 -11.73 16 11 C 0.11 1.87 6.44 -3.71 -0.02 1.85 16 12 C -0.13 -2.11 6.08 -26.61 -0.16 -2.27 16 13 C -0.12 -2.37 5.10 -26.69 -0.14 -2.51 16 14 C 0.18 3.74 2.17 -67.81 -0.15 3.60 16 15 H 0.05 1.14 7.64 -51.93 -0.40 0.74 16 16 N -0.57 -13.22 2.36 -165.53 -0.39 -13.61 16 17 C -0.25 -6.33 8.10 -15.06 -0.12 -6.46 16 18 H 0.06 1.55 6.89 -52.49 -0.36 1.18 16 19 C 0.01 0.37 4.85 -17.43 -0.08 0.28 16 20 N -0.88 -22.82 11.63 55.49 0.65 -22.17 16 21 Si 0.89 20.41 29.62 -169.99 -5.03 15.38 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 25 C 0.16 3.52 5.63 -4.04 -0.02 3.50 16 26 C 0.05 1.03 7.39 37.16 0.27 1.31 16 27 O -0.57 -10.26 12.28 -35.23 -0.43 -10.69 16 28 C 0.07 1.44 5.16 -3.71 -0.02 1.42 16 29 C -0.13 -1.94 9.34 -39.06 -0.36 -2.31 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 32 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 33 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 34 H 0.09 1.37 8.14 -51.94 -0.42 0.95 16 35 H 0.07 0.78 8.08 -51.92 -0.42 0.36 16 36 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 1.38 7.01 -51.93 -0.36 1.01 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.24 7.63 -51.93 -0.40 0.84 16 42 H 0.06 1.17 7.04 -51.93 -0.37 0.80 16 43 H 0.25 6.35 8.31 -40.82 -0.34 6.01 16 44 H 0.03 0.60 8.02 -51.93 -0.42 0.19 16 45 H 0.10 2.54 5.61 -51.93 -0.29 2.24 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.36 4.70 9.12 45.56 0.42 5.12 16 49 H 0.07 1.62 7.50 -51.93 -0.39 1.23 16 50 H 0.14 3.16 4.12 -80.76 -0.33 2.83 16 51 H 0.14 2.00 7.66 -52.48 -0.40 1.60 16 LS Contribution 402.93 15.07 6.07 6.07 Total: -1.00 -29.34 402.93 -9.38 -38.72 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -7.50 Total: 10.82 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -2.27 Total: 6.65 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.30 Total: -55.56 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.35 Total: -22.08 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.34 -9.38 -38.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656776105.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.481 kcal (2) G-P(sol) polarization free energy of solvation -29.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.48 seconds