Wall clock time and date at job start Wed Apr 1 2020 04:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38621 * 120.75528 * 2 1 4 4 C 1.38558 * 119.35316 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.55166 * 180.02562 * 4 3 2 6 6 N 1.31523 * 120.90380 * 359.97438 * 4 3 2 7 7 C 1.32723 * 121.64000 * 0.02562 * 6 4 3 8 8 C 1.48174 * 119.71998 * 179.97438 * 7 6 4 9 9 O 1.21515 * 119.99395 * 172.92176 * 8 7 6 10 10 N 1.34771 * 120.00052 * 352.92783 * 8 7 6 11 11 C 1.46922 * 120.63148 * 169.79230 * 10 8 7 12 12 C 1.53192 * 108.77878 * 126.36454 * 11 10 8 13 13 C 1.53036 * 109.31070 * 54.63479 * 12 11 10 14 14 C 1.53035 * 109.54339 * 298.63368 * 13 12 11 15 15 H 1.08996 * 109.52454 * 301.40399 * 14 13 12 16 16 N 1.46493 * 109.50415 * 181.31640 * 14 13 12 17 17 C 1.36942 * 119.99705 * 300.16572 * 16 14 13 18 18 H 1.07998 * 120.00308 * 36.55390 * 17 16 14 19 19 C 1.38813 * 119.99730 * 216.82587 * 17 16 14 20 20 N 1.31623 * 120.00251 * 23.52689 * 19 17 16 21 21 Si 1.86802 * 119.99984 * 203.52871 * 19 17 16 22 22 H 1.48504 * 109.47004 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47171 * 119.99852 * 21 19 17 24 24 H 1.48494 * 109.47359 * 240.00078 * 21 19 17 25 25 C 1.46497 * 120.00086 * 120.16148 * 16 14 13 26 26 C 1.53001 * 109.47173 * 274.76918 * 25 16 14 27 27 O 1.42905 * 109.46861 * 65.00070 * 26 25 16 28 28 C 1.46929 * 120.63221 * 349.76424 * 10 8 7 29 29 C 1.38591 * 120.75617 * 180.25224 * 2 1 3 30 30 H 1.09005 * 109.47407 * 90.00131 * 1 2 3 31 31 H 1.09003 * 109.47378 * 210.00506 * 1 2 3 32 32 H 1.08998 * 109.47221 * 330.00354 * 1 2 3 33 33 H 1.08002 * 120.32616 * 359.97438 * 3 2 1 34 34 H 1.08988 * 109.47401 * 269.97808 * 5 4 3 35 35 H 1.09008 * 109.46853 * 29.97877 * 5 4 3 36 36 H 1.09003 * 109.47266 * 149.97184 * 5 4 3 37 37 H 1.08999 * 109.58684 * 246.15379 * 11 10 8 38 38 H 1.09000 * 109.58719 * 6.57821 * 11 10 8 39 39 H 1.08999 * 109.49658 * 174.58642 * 12 11 10 40 40 H 1.09004 * 109.49973 * 294.65108 * 12 11 10 41 41 H 1.09005 * 109.45651 * 178.61124 * 13 12 11 42 42 H 1.09004 * 109.45729 * 58.66069 * 13 12 11 43 43 H 0.96992 * 120.00303 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.46912 * 34.77259 * 25 16 14 45 45 H 1.09005 * 109.46982 * 154.77355 * 25 16 14 46 46 H 1.08998 * 109.46998 * 185.00151 * 26 25 16 47 47 H 1.09000 * 109.47111 * 304.99775 * 26 25 16 48 48 H 0.96697 * 113.99685 * 179.97438 * 27 26 25 49 49 H 1.09000 * 109.58754 * 113.84662 * 28 10 8 50 50 H 1.08994 * 109.70028 * 353.48979 * 28 10 8 51 51 H 1.08004 * 120.46908 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.1913 0.0000 4 6 3.6010 1.1574 0.0005 5 6 4.3761 2.4498 0.0011 6 7 4.2487 0.0126 0.0016 7 6 3.6081 -1.1498 0.0016 8 6 4.3806 -2.4142 0.0022 9 8 3.8060 -3.4770 0.1319 10 7 5.7204 -2.3854 -0.1410 11 6 6.5229 -3.5964 0.0787 12 6 7.3931 -3.8423 -1.1579 13 6 8.2172 -2.5874 -1.4545 14 6 7.2778 -1.4161 -1.7503 15 1 6.6411 -1.6652 -2.5992 16 7 8.0676 -0.2231 -2.0649 17 6 8.9461 0.2792 -1.1423 18 1 9.5067 -0.3923 -0.5089 19 6 9.1120 1.6517 -1.0175 20 7 8.1559 2.4684 -1.4067 21 14 10.6922 2.3398 -0.2971 22 1 11.6013 1.2214 0.0607 23 1 11.3532 3.2145 -1.2987 24 1 10.3782 3.1305 0.9200 25 6 7.9176 0.4325 -3.3664 26 6 8.8250 -0.2526 -4.3901 27 8 8.3857 -1.5975 -4.5914 28 6 6.4062 -1.1427 -0.5204 29 6 2.2157 -1.1910 -0.0052 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6936 2.1366 -0.0004 34 1 4.5638 2.7614 -1.0263 35 1 3.7993 3.2191 0.5146 36 1 5.3259 2.3036 0.5158 37 1 7.1599 -3.4590 0.9524 38 1 5.8623 -4.4490 0.2360 39 1 8.0629 -4.6815 -0.9702 40 1 6.7554 -4.0698 -2.0122 41 1 8.8556 -2.7683 -2.3193 42 1 8.8365 -2.3470 -0.5903 43 1 8.2720 3.4274 -1.3198 44 1 6.8803 0.3584 -3.6931 45 1 8.1968 1.4825 -3.2786 46 1 8.7809 0.2893 -5.3348 47 1 9.8507 -0.2567 -4.0212 48 1 8.9163 -2.0931 -5.2300 49 1 7.0338 -0.8052 0.3044 50 1 5.6702 -0.3745 -0.7576 51 1 1.6958 -2.1376 -0.0098 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656776105.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:26 Heat of formation + Delta-G solvation = -34.131072 kcal Electronic energy + Delta-G solvation = -32830.342801 eV Core-core repulsion = 28730.015987 eV Total energy + Delta-G solvation = -4100.326814 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 4.06 seconds Orbital eigenvalues (eV) -41.97831 -40.45221 -39.01494 -37.66185 -36.19095 -35.31061 -34.10643 -33.50525 -32.75767 -31.18137 -29.04442 -28.90185 -28.30850 -26.90905 -25.91109 -24.83818 -23.54125 -22.20472 -22.13858 -21.51475 -20.23985 -18.44460 -18.40797 -17.98261 -17.38837 -17.02800 -16.93179 -16.69051 -16.38659 -16.09213 -15.56264 -15.43374 -15.11836 -15.04236 -14.86897 -14.52131 -14.26427 -14.15814 -14.08415 -13.90472 -13.79062 -13.44069 -13.20890 -13.11192 -13.03171 -12.95833 -12.77639 -12.74924 -12.52791 -12.30930 -12.22717 -12.05400 -11.84990 -11.64837 -11.51429 -11.35700 -11.23249 -10.67604 -10.49146 -10.43858 -10.03110 -9.75485 -9.56146 -8.41502 -7.73456 -5.27866 -0.36073 0.20669 1.47267 1.53437 1.60704 1.63280 1.97582 2.57723 2.77493 3.02526 3.32333 3.47561 3.67656 3.70800 3.81709 4.03378 4.04169 4.09525 4.10777 4.25443 4.30684 4.46052 4.52385 4.57022 4.59230 4.65237 4.65428 4.71115 4.76308 4.79091 4.81829 4.86121 4.93756 4.98344 5.04062 5.11058 5.14084 5.18094 5.28755 5.31124 5.35463 5.36930 5.56455 5.61299 5.64275 5.68381 5.83331 5.96341 6.38587 6.56791 6.77872 7.09448 7.10042 7.27811 7.94794 8.53398 9.24331 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009499 B = 0.004567 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.857574 B = 6129.266330 C = 7532.123322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.042 4.042 3 C -0.142 4.142 4 C 0.115 3.885 5 C -0.091 4.091 6 N -0.470 5.470 7 C 0.058 3.942 8 C 0.562 3.438 9 O -0.573 6.573 10 N -0.587 5.587 11 C 0.106 3.894 12 C -0.116 4.116 13 C -0.112 4.112 14 C 0.179 3.821 15 H 0.033 0.967 16 N -0.575 5.575 17 C -0.254 4.254 18 H 0.049 0.951 19 C -0.021 4.021 20 N -0.900 5.900 21 Si 0.941 3.059 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.296 1.296 25 C 0.156 3.844 26 C 0.069 3.931 27 O -0.578 6.578 28 C 0.086 3.914 29 C -0.128 4.128 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.176 0.824 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.044 0.956 43 H 0.251 0.749 44 H 0.012 0.988 45 H 0.081 0.919 46 H 0.047 0.953 47 H 0.032 0.968 48 H 0.380 0.620 49 H 0.038 0.962 50 H 0.135 0.865 51 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.194 -2.935 -0.488 11.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.050 4.050 3 C -0.161 4.161 4 C -0.024 4.024 5 C -0.149 4.149 6 N -0.184 5.184 7 C -0.079 4.079 8 C 0.350 3.650 9 O -0.454 6.454 10 N -0.317 5.317 11 C -0.016 4.016 12 C -0.155 4.155 13 C -0.152 4.152 14 C 0.071 3.929 15 H 0.052 0.948 16 N -0.296 5.296 17 C -0.384 4.384 18 H 0.066 0.934 19 C -0.220 4.220 20 N -0.543 5.543 21 Si 0.770 3.230 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.223 1.223 25 C 0.030 3.970 26 C -0.011 4.011 27 O -0.385 6.385 28 C -0.037 4.037 29 C -0.150 4.150 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.193 0.807 34 H 0.091 0.909 35 H 0.123 0.877 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.031 0.969 45 H 0.099 0.901 46 H 0.065 0.935 47 H 0.050 0.950 48 H 0.227 0.773 49 H 0.057 0.943 50 H 0.151 0.849 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.015 -3.152 0.033 11.457 hybrid contribution 1.056 0.421 -0.063 1.138 sum -9.959 -2.731 -0.030 10.327 Atomic orbital electron populations 1.20909 0.86505 1.04916 1.04264 1.20745 0.99012 0.91300 0.93967 1.22415 0.93478 1.00550 0.99671 1.21913 0.92724 0.93791 0.94016 1.20639 0.99404 0.91535 1.03275 1.67594 1.39777 0.98503 1.12484 1.21151 0.92652 0.91708 1.02363 1.18287 0.82274 0.87803 0.76671 1.90661 1.70039 1.31153 1.53525 1.48250 1.05552 1.12760 1.65121 1.21792 0.94051 0.87176 0.98555 1.21801 0.98311 0.98421 0.96936 1.21764 0.98225 0.94590 1.00590 1.20583 0.90950 0.87833 0.93487 0.94840 1.43750 1.44902 1.29347 1.11556 1.18996 1.14855 0.89304 1.15294 0.93370 1.25551 0.99068 0.97265 1.00089 1.70148 1.30801 1.02309 1.51067 0.85653 0.81853 0.78019 0.77459 1.20189 1.21596 1.22314 1.20843 0.94767 0.97595 0.83826 1.22825 0.97980 0.82723 0.97594 1.86542 1.59435 1.25693 1.66780 1.23297 0.97716 0.85481 0.97238 1.22073 0.92637 1.00756 0.99489 0.89038 0.90082 0.88680 0.80686 0.90890 0.87695 0.92911 0.91007 0.89204 0.88567 0.92564 0.92271 0.93745 0.94002 0.96907 0.90137 0.93523 0.94984 0.77259 0.94319 0.84899 0.83316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.06 71.23 0.72 -0.70 16 2 C -0.04 -0.95 5.91 -19.69 -0.12 -1.07 16 3 C -0.14 -3.28 9.45 22.44 0.21 -3.07 16 4 C 0.11 3.64 6.78 42.68 0.29 3.93 16 5 C -0.09 -2.80 10.17 71.24 0.72 -2.08 16 6 N -0.47 -18.07 6.04 -173.08 -1.05 -19.11 16 7 C 0.06 2.13 6.59 41.91 0.28 2.41 16 8 C 0.56 22.57 7.64 86.88 0.66 23.23 16 9 O -0.57 -23.86 15.80 -3.76 -0.06 -23.92 16 10 N -0.59 -23.41 2.97 -821.94 -2.44 -25.85 16 11 C 0.11 3.61 6.44 86.36 0.56 4.17 16 12 C -0.12 -3.73 6.08 30.67 0.19 -3.54 16 13 C -0.11 -4.36 5.10 30.62 0.16 -4.20 16 14 C 0.18 7.94 2.17 45.07 0.10 8.04 16 15 H 0.03 1.58 7.64 -2.39 -0.02 1.56 16 16 N -0.58 -27.80 2.36 -677.61 -1.60 -29.40 16 17 C -0.25 -13.23 8.10 84.03 0.68 -12.55 16 18 H 0.05 2.60 6.89 -2.91 -0.02 2.58 16 19 C -0.02 -1.10 4.85 84.86 0.41 -0.69 16 20 N -0.90 -48.16 11.63 21.65 0.25 -47.91 16 21 Si 0.94 42.82 29.62 68.60 2.03 44.85 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 25 C 0.16 7.24 5.63 86.38 0.49 7.73 16 26 C 0.07 2.60 7.39 71.98 0.53 3.14 16 27 O -0.58 -20.37 12.28 -148.98 -1.83 -22.20 16 28 C 0.09 3.83 5.16 86.36 0.45 4.28 16 29 C -0.13 -3.76 9.34 22.61 0.21 -3.55 16 30 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.08 0.95 8.10 -2.39 -0.02 0.93 16 32 H 0.09 0.84 8.10 -2.39 -0.02 0.82 16 33 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 34 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.10 2.30 8.08 -2.38 -0.02 2.28 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.09 2.95 7.01 -2.39 -0.02 2.93 16 39 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 41 H 0.06 2.32 7.63 -2.38 -0.02 2.30 16 42 H 0.04 1.83 7.04 -2.39 -0.02 1.81 16 43 H 0.25 12.99 8.31 -92.71 -0.77 12.22 16 44 H 0.01 0.60 8.02 -2.39 -0.02 0.58 16 45 H 0.08 4.11 5.61 -2.38 -0.01 4.10 16 46 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.38 9.30 9.12 -74.06 -0.68 8.63 16 49 H 0.04 1.93 7.50 -2.39 -0.02 1.91 16 50 H 0.13 6.32 4.12 -59.31 -0.24 6.08 16 51 H 0.15 4.06 7.66 -2.91 -0.02 4.04 16 Total: -1.00 -66.89 402.93 1.87 -65.02 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: 0.03 Total: 33.06 kcal Atomic # 6 Polarization: 18.93 SS G_CDS: 6.53 Total: 25.47 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -4.84 Total: -122.28 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -1.89 Total: -46.11 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -66.89 1.87 -65.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656776105.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.893 kcal (2) G-P(sol) polarization free energy of solvation -66.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.06 seconds