Wall clock time and date at job start Wed Apr 1 2020 05:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35925 * 116.99952 * 2 1 4 4 C 1.38850 * 120.40486 * 0.02562 * 3 2 1 5 5 N 1.31881 * 120.99997 * 179.97438 * 4 3 2 6 6 C 1.31683 * 121.94069 * 359.70339 * 5 4 3 7 7 C 1.39522 * 120.69102 * 0.58873 * 6 5 4 8 8 C 1.47852 * 120.53175 * 179.69775 * 7 6 5 9 9 O 1.21549 * 119.99745 * 122.87531 * 8 7 6 10 10 N 1.34780 * 120.00357 * 302.87503 * 8 7 6 11 11 C 1.46929 * 120.62660 * 4.22038 * 10 8 7 12 12 C 1.53185 * 108.77444 * 126.41318 * 11 10 8 13 13 C 1.53037 * 109.31722 * 54.63256 * 12 11 10 14 14 C 1.53076 * 109.65625 * 298.70352 * 13 12 11 15 15 C 1.46922 * 120.63248 * 184.23902 * 10 8 7 16 16 H 1.08994 * 109.58680 * 113.65808 * 15 10 8 17 17 C 1.53003 * 109.58583 * 353.37717 * 15 10 8 18 18 H 1.09002 * 109.47258 * 54.39424 * 17 15 10 19 19 C 1.52998 * 109.47263 * 174.39580 * 17 15 10 20 20 N 1.46507 * 109.46850 * 294.39356 * 17 15 10 21 21 C 1.36940 * 119.99646 * 155.00276 * 20 17 15 22 22 H 1.08001 * 120.00198 * 0.02562 * 21 20 17 23 23 C 1.38815 * 119.99628 * 179.97438 * 21 20 17 24 24 N 1.31617 * 120.00128 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99641 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47439 * 60.00061 * 25 23 21 27 27 H 1.48501 * 109.47248 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47433 * 299.99866 * 25 23 21 29 29 C 1.38839 * 120.40706 * 180.02562 * 3 2 1 30 30 C 1.50706 * 120.87858 * 0.03852 * 29 3 2 31 31 H 1.09001 * 109.47091 * 60.00083 * 1 2 3 32 32 H 1.09002 * 109.47038 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47123 * 300.00188 * 1 2 3 34 34 H 1.08006 * 119.50002 * 0.02562 * 4 3 2 35 35 H 1.07999 * 119.65587 * 180.30733 * 6 5 4 36 36 H 1.09000 * 109.58532 * 246.20010 * 11 10 8 37 37 H 1.08999 * 109.58573 * 6.48269 * 11 10 8 38 38 H 1.09005 * 109.49663 * 174.58477 * 12 11 10 39 39 H 1.09005 * 109.49639 * 294.64581 * 12 11 10 40 40 H 1.09000 * 109.46122 * 58.65000 * 13 12 11 41 41 H 1.08992 * 109.46698 * 178.63130 * 13 12 11 42 42 H 1.09003 * 109.39133 * 301.27169 * 14 13 12 43 43 H 1.08999 * 109.62494 * 181.17101 * 14 13 12 44 44 H 1.08989 * 109.47433 * 185.90780 * 19 17 15 45 45 H 1.09003 * 109.46761 * 305.90888 * 19 17 15 46 46 H 1.09004 * 109.47114 * 65.90286 * 19 17 15 47 47 H 0.97001 * 119.99969 * 335.00037 * 20 17 15 48 48 H 0.96993 * 120.00069 * 180.02562 * 24 23 21 49 49 H 1.09003 * 109.46966 * 266.57099 * 30 29 3 50 50 H 1.09004 * 109.46864 * 26.57281 * 30 29 3 51 51 H 1.09003 * 109.46894 * 146.57310 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2981 2.3809 0.0005 5 7 1.8846 3.5621 0.0010 6 6 3.1953 3.6892 0.0069 7 6 4.0199 2.5637 0.0004 8 6 5.4911 2.7105 0.0003 9 8 6.1531 2.1976 0.8813 10 7 6.0982 3.4130 -0.9767 11 6 5.3068 4.1155 -1.9960 12 6 5.7462 5.5825 -2.0367 13 6 7.2589 5.6519 -2.2574 14 6 7.9808 4.9635 -1.0963 15 6 7.5639 3.4904 -1.0429 16 1 7.9168 2.9782 -1.9380 17 6 8.1690 2.8306 0.1978 18 1 7.7840 1.8154 0.2938 19 6 9.6922 2.7877 0.0611 20 7 7.8071 3.6046 1.3880 21 6 7.7688 2.9967 2.6145 22 1 8.0057 1.9469 2.7045 23 6 7.4265 3.7302 3.7422 24 7 7.1384 5.0097 3.6326 25 14 7.3736 2.9008 5.4151 26 1 8.7149 2.3514 5.7380 27 1 6.9844 3.8942 6.4480 28 1 6.3799 1.7976 5.3895 29 6 3.4320 1.2936 -0.0005 30 6 4.2810 0.0484 -0.0020 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 0.2196 2.3226 0.0014 35 1 3.6366 4.6749 0.0121 36 1 5.4754 3.6564 -2.9701 37 1 4.2485 4.0558 -1.7421 38 1 5.2355 6.0926 -2.8535 39 1 5.4933 6.0643 -1.0922 40 1 7.5134 5.1483 -3.1900 41 1 7.5707 6.6949 -2.3111 42 1 7.7096 5.4525 -0.1606 43 1 9.0587 5.0314 -1.2435 44 1 10.1160 2.2256 0.8931 45 1 9.9591 2.3031 -0.8781 46 1 10.0867 3.8038 0.0706 47 1 7.5948 4.5477 1.3072 48 1 6.8995 5.5223 4.4206 49 1 4.5369 -0.2180 1.0235 50 1 3.7260 -0.7691 -0.4622 51 1 5.1941 0.2319 -0.5684 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660441422.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:17 Heat of formation + Delta-G solvation = 20.004303 kcal Electronic energy + Delta-G solvation = -33349.360755 eV Core-core repulsion = 29251.381427 eV Total energy + Delta-G solvation = -4097.979328 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.03158 -39.89994 -38.10439 -36.84171 -35.22150 -33.58580 -32.53618 -32.14395 -30.49600 -29.55557 -28.01321 -27.89713 -27.65783 -25.26011 -23.88446 -23.51656 -22.91439 -22.24424 -20.71507 -19.98865 -18.92171 -17.66533 -17.26446 -16.90902 -16.34532 -16.11941 -15.95401 -15.55134 -14.67602 -14.48737 -14.20359 -14.08904 -14.02803 -13.80384 -13.56473 -13.49549 -13.07427 -12.93844 -12.71738 -12.69940 -12.43841 -12.24369 -12.06383 -12.05332 -11.79080 -11.65147 -11.56599 -11.36961 -11.09639 -10.79387 -10.62858 -10.61573 -10.51005 -10.35054 -10.09178 -9.80725 -9.54194 -9.34956 -9.24786 -8.67173 -8.44474 -8.20885 -7.91064 -6.54933 -5.46648 -2.68176 0.92358 1.27105 2.93242 3.26934 3.51195 3.60430 3.64189 3.66052 3.80603 4.41447 4.54828 4.71954 4.81542 4.84269 4.87513 4.91363 4.96649 5.05449 5.11335 5.22309 5.23088 5.39323 5.44558 5.53202 5.57909 5.59732 5.72185 5.80544 5.82616 5.84853 5.87185 5.94179 6.04263 6.10633 6.18061 6.22330 6.26864 6.29918 6.34443 6.45210 6.47581 6.53362 6.62132 6.90462 7.03325 7.07607 7.08931 7.40299 7.89876 7.95892 8.02500 8.71632 8.91535 9.83888 10.40284 10.76489 11.77848 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008720 B = 0.005067 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3210.095135 B = 5524.228897 C = 7258.293892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.308 6.308 3 C 0.068 3.932 4 C 0.024 3.976 5 N -0.456 5.456 6 C 0.097 3.903 7 C -0.121 4.121 8 C 0.541 3.459 9 O -0.429 6.429 10 N -0.604 5.604 11 C 0.104 3.896 12 C -0.135 4.135 13 C -0.116 4.116 14 C -0.134 4.134 15 C 0.148 3.852 16 H 0.063 0.937 17 C 0.170 3.830 18 H 0.080 0.920 19 C -0.169 4.169 20 N -0.702 5.702 21 C -0.176 4.176 22 H 0.064 0.936 23 C -0.029 4.029 24 N -0.948 5.948 25 Si 0.896 3.104 26 H -0.292 1.292 27 H -0.296 1.296 28 H -0.292 1.292 29 C -0.033 4.033 30 C -0.105 4.105 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.057 0.943 34 H 0.157 0.843 35 H 0.163 0.837 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.032 0.968 46 H 0.046 0.954 47 H 0.378 0.622 48 H 0.248 0.752 49 H 0.085 0.915 50 H 0.070 0.930 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.929 -5.130 -16.515 19.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.021 3.979 4 C -0.133 4.133 5 N -0.165 5.165 6 C -0.062 4.062 7 C -0.126 4.126 8 C 0.324 3.676 9 O -0.297 6.297 10 N -0.340 5.340 11 C -0.020 4.020 12 C -0.173 4.173 13 C -0.154 4.154 14 C -0.172 4.172 15 C 0.044 3.956 16 H 0.081 0.919 17 C 0.059 3.941 18 H 0.098 0.902 19 C -0.230 4.230 20 N -0.344 5.344 21 C -0.308 4.308 22 H 0.082 0.918 23 C -0.222 4.222 24 N -0.600 5.600 25 Si 0.730 3.270 26 H -0.219 1.219 27 H -0.223 1.223 28 H -0.219 1.219 29 C -0.042 4.042 30 C -0.161 4.161 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.174 0.826 35 H 0.180 0.820 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.071 0.929 45 H 0.051 0.949 46 H 0.065 0.935 47 H 0.214 0.786 48 H 0.058 0.942 49 H 0.103 0.897 50 H 0.089 0.911 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.011 -5.040 -15.836 19.400 hybrid contribution -0.078 -0.428 1.040 1.127 sum -10.088 -5.467 -14.795 18.723 Atomic orbital electron populations 1.23097 0.78291 1.04172 1.01487 1.86075 1.21291 1.25861 1.88818 1.19684 0.92278 0.85814 1.00157 1.22915 1.00345 0.87217 1.02851 1.67511 1.12028 1.25881 1.11067 1.22827 0.88244 0.98488 0.96618 1.21053 0.96311 0.93325 1.01914 1.17893 0.85730 0.81547 0.82389 1.91134 1.62067 1.44403 1.32110 1.47753 1.06342 1.51639 1.28316 1.21788 0.96215 0.92361 0.91641 1.21910 0.96772 0.96125 1.02538 1.21498 0.94857 1.00520 0.98477 1.22002 0.99987 0.95774 0.99449 1.21615 0.78376 0.96087 0.99489 0.91911 1.20702 0.90512 0.97433 0.85403 0.90218 1.22586 1.00399 1.00778 0.99242 1.42410 1.81305 1.08831 1.01885 1.19012 1.34346 0.93208 0.84196 0.91843 1.24535 1.04548 0.95907 0.97182 1.69614 1.56143 1.06281 1.27934 0.86390 0.77394 0.77992 0.85270 1.21901 1.22271 1.21924 1.19665 0.90700 0.95583 0.98282 1.20651 0.98321 0.93310 1.03844 0.92540 0.88029 0.92431 0.82597 0.81983 0.92180 0.89950 0.91341 0.91046 0.92461 0.92074 0.90062 0.91030 0.92896 0.94940 0.93523 0.78617 0.94248 0.89676 0.91070 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.82 101.05 0.99 1.17 16 2 O -0.31 -3.70 9.61 -19.50 -0.19 -3.89 16 3 C 0.07 0.95 6.68 -39.13 -0.26 0.69 16 4 C 0.02 0.32 10.21 -17.30 -0.18 0.14 16 5 N -0.46 -7.01 10.34 -12.80 -0.13 -7.14 16 6 C 0.10 1.56 8.60 -17.14 -0.15 1.42 16 7 C -0.12 -2.05 4.93 -104.84 -0.52 -2.57 16 8 C 0.54 10.18 5.83 -12.32 -0.07 10.11 16 9 O -0.43 -9.81 9.18 5.32 0.05 -9.76 16 10 N -0.60 -9.65 2.97 -166.33 -0.49 -10.14 16 11 C 0.10 1.30 5.96 -3.71 -0.02 1.27 16 12 C -0.14 -1.59 6.08 -26.62 -0.16 -1.75 16 13 C -0.12 -1.39 5.88 -26.67 -0.16 -1.54 16 14 C -0.13 -2.03 4.88 -26.60 -0.13 -2.16 16 15 C 0.15 2.39 2.72 -67.60 -0.18 2.21 16 16 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 17 C 0.17 3.40 1.88 -67.93 -0.13 3.27 16 18 H 0.08 1.76 5.91 -52.21 -0.31 1.45 16 19 C -0.17 -3.08 9.13 37.16 0.34 -2.75 16 20 N -0.70 -17.44 3.61 -53.42 -0.19 -17.63 16 21 C -0.18 -5.01 7.98 -15.06 -0.12 -5.13 16 22 H 0.06 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.03 -0.86 5.50 -17.43 -0.10 -0.96 16 24 N -0.95 -29.60 13.06 55.49 0.72 -28.88 16 25 Si 0.90 24.08 29.55 -169.99 -5.02 19.05 16 26 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 27 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 28 H -0.29 -7.88 7.11 56.52 0.40 -7.48 16 29 C -0.03 -0.53 5.96 -103.75 -0.62 -1.15 16 30 C -0.10 -1.53 9.06 36.01 0.33 -1.20 16 31 H 0.06 0.34 7.68 -51.93 -0.40 -0.06 16 32 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 34 H 0.16 1.55 6.30 -52.48 -0.33 1.22 16 35 H 0.16 2.54 7.49 -52.49 -0.39 2.15 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 1.03 4.35 -51.93 -0.23 0.80 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.08 1.53 6.05 -51.93 -0.31 1.22 16 43 H 0.07 1.04 7.03 -51.93 -0.37 0.67 16 44 H 0.05 1.04 8.14 -51.94 -0.42 0.62 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.05 0.85 7.04 -51.93 -0.37 0.48 16 47 H 0.38 10.01 5.64 -40.82 -0.23 9.78 16 48 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 49 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 50 H 0.07 0.89 7.52 -51.93 -0.39 0.50 16 51 H 0.07 1.06 7.24 -51.93 -0.38 0.68 16 LS Contribution 388.22 15.07 5.85 5.85 Total: -1.00 -34.16 388.22 -8.41 -42.57 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -7.87 Total: 8.89 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -1.13 Total: 1.07 kcal Atomic # 7 Polarization: -63.70 SS G_CDS: -0.09 Total: -63.80 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.14 Total: -13.64 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -5.02 Total: 19.05 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.16 -8.41 -42.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660441422.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.573 kcal (2) G-P(sol) polarization free energy of solvation -34.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds