Wall clock time and date at job start Wed Apr 1 2020 05:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35925 * 116.99952 * 2 1 4 4 C 1.38850 * 120.40486 * 0.02562 * 3 2 1 5 5 N 1.31881 * 120.99997 * 179.97438 * 4 3 2 6 6 C 1.31683 * 121.94069 * 359.70339 * 5 4 3 7 7 C 1.39522 * 120.69102 * 0.58873 * 6 5 4 8 8 C 1.47852 * 120.53175 * 179.69775 * 7 6 5 9 9 O 1.21549 * 119.99745 * 122.87531 * 8 7 6 10 10 N 1.34780 * 120.00357 * 302.87503 * 8 7 6 11 11 C 1.46929 * 120.62660 * 4.22038 * 10 8 7 12 12 C 1.53185 * 108.77444 * 126.41318 * 11 10 8 13 13 C 1.53037 * 109.31722 * 54.63256 * 12 11 10 14 14 C 1.53076 * 109.65625 * 298.70352 * 13 12 11 15 15 C 1.46922 * 120.63248 * 184.23902 * 10 8 7 16 16 H 1.08994 * 109.58680 * 113.65808 * 15 10 8 17 17 C 1.53003 * 109.58583 * 353.37717 * 15 10 8 18 18 H 1.09002 * 109.47258 * 54.39424 * 17 15 10 19 19 C 1.52998 * 109.47263 * 174.39580 * 17 15 10 20 20 N 1.46507 * 109.46850 * 294.39356 * 17 15 10 21 21 C 1.36940 * 119.99646 * 155.00276 * 20 17 15 22 22 H 1.08001 * 120.00198 * 0.02562 * 21 20 17 23 23 C 1.38815 * 119.99628 * 179.97438 * 21 20 17 24 24 N 1.31617 * 120.00128 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99641 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47439 * 60.00061 * 25 23 21 27 27 H 1.48501 * 109.47248 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47433 * 299.99866 * 25 23 21 29 29 C 1.38839 * 120.40706 * 180.02562 * 3 2 1 30 30 C 1.50706 * 120.87858 * 0.03852 * 29 3 2 31 31 H 1.09001 * 109.47091 * 60.00083 * 1 2 3 32 32 H 1.09002 * 109.47038 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47123 * 300.00188 * 1 2 3 34 34 H 1.08006 * 119.50002 * 0.02562 * 4 3 2 35 35 H 1.07999 * 119.65587 * 180.30733 * 6 5 4 36 36 H 1.09000 * 109.58532 * 246.20010 * 11 10 8 37 37 H 1.08999 * 109.58573 * 6.48269 * 11 10 8 38 38 H 1.09005 * 109.49663 * 174.58477 * 12 11 10 39 39 H 1.09005 * 109.49639 * 294.64581 * 12 11 10 40 40 H 1.09000 * 109.46122 * 58.65000 * 13 12 11 41 41 H 1.08992 * 109.46698 * 178.63130 * 13 12 11 42 42 H 1.09003 * 109.39133 * 301.27169 * 14 13 12 43 43 H 1.08999 * 109.62494 * 181.17101 * 14 13 12 44 44 H 1.08989 * 109.47433 * 185.90780 * 19 17 15 45 45 H 1.09003 * 109.46761 * 305.90888 * 19 17 15 46 46 H 1.09004 * 109.47114 * 65.90286 * 19 17 15 47 47 H 0.97001 * 119.99969 * 335.00037 * 20 17 15 48 48 H 0.96993 * 120.00069 * 180.02562 * 24 23 21 49 49 H 1.09003 * 109.46966 * 266.57099 * 30 29 3 50 50 H 1.09004 * 109.46864 * 26.57281 * 30 29 3 51 51 H 1.09003 * 109.46894 * 146.57310 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2981 2.3809 0.0005 5 7 1.8846 3.5621 0.0010 6 6 3.1953 3.6892 0.0069 7 6 4.0199 2.5637 0.0004 8 6 5.4911 2.7105 0.0003 9 8 6.1531 2.1976 0.8813 10 7 6.0982 3.4130 -0.9767 11 6 5.3068 4.1155 -1.9960 12 6 5.7462 5.5825 -2.0367 13 6 7.2589 5.6519 -2.2574 14 6 7.9808 4.9635 -1.0963 15 6 7.5639 3.4904 -1.0429 16 1 7.9168 2.9782 -1.9380 17 6 8.1690 2.8306 0.1978 18 1 7.7840 1.8154 0.2938 19 6 9.6922 2.7877 0.0611 20 7 7.8071 3.6046 1.3880 21 6 7.7688 2.9967 2.6145 22 1 8.0057 1.9469 2.7045 23 6 7.4265 3.7302 3.7422 24 7 7.1384 5.0097 3.6326 25 14 7.3736 2.9008 5.4151 26 1 8.7149 2.3514 5.7380 27 1 6.9844 3.8942 6.4480 28 1 6.3799 1.7976 5.3895 29 6 3.4320 1.2936 -0.0005 30 6 4.2810 0.0484 -0.0020 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 0.2196 2.3226 0.0014 35 1 3.6366 4.6749 0.0121 36 1 5.4754 3.6564 -2.9701 37 1 4.2485 4.0558 -1.7421 38 1 5.2355 6.0926 -2.8535 39 1 5.4933 6.0643 -1.0922 40 1 7.5134 5.1483 -3.1900 41 1 7.5707 6.6949 -2.3111 42 1 7.7096 5.4525 -0.1606 43 1 9.0587 5.0314 -1.2435 44 1 10.1160 2.2256 0.8931 45 1 9.9591 2.3031 -0.8781 46 1 10.0867 3.8038 0.0706 47 1 7.5948 4.5477 1.3072 48 1 6.8995 5.5223 4.4206 49 1 4.5369 -0.2180 1.0235 50 1 3.7260 -0.7691 -0.4622 51 1 5.1941 0.2319 -0.5684 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660441422.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:16 Heat of formation + Delta-G solvation = -2.669850 kcal Electronic energy + Delta-G solvation = -33350.343980 eV Core-core repulsion = 29251.381427 eV Total energy + Delta-G solvation = -4098.962553 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.22425 -41.12699 -39.13665 -38.16660 -36.84575 -34.79938 -34.12518 -33.69287 -31.75194 -31.09184 -29.67136 -28.96032 -28.48009 -26.51720 -25.71266 -24.81289 -24.22304 -23.44971 -21.87844 -21.43813 -20.14073 -19.10697 -18.66654 -18.39793 -17.49623 -17.29163 -16.97577 -16.85061 -16.34159 -15.84993 -15.65072 -15.44390 -15.17046 -15.10123 -14.93342 -14.71773 -14.44044 -14.19334 -14.02704 -13.93686 -13.81180 -13.62240 -13.47847 -13.15881 -13.03069 -12.86809 -12.77115 -12.73440 -12.61963 -12.36812 -12.32292 -12.16756 -11.94550 -11.70125 -11.56326 -11.34304 -11.25304 -10.84369 -10.71598 -10.49545 -9.72977 -9.44372 -9.34006 -8.59415 -7.75016 -4.92384 -0.25495 0.09957 1.41380 1.44620 1.49384 1.85849 1.98968 2.37537 2.60337 2.66995 3.35829 3.45238 3.54079 3.59049 3.67121 3.87073 3.95976 4.00912 4.09322 4.17762 4.24397 4.29881 4.37471 4.39348 4.40733 4.43469 4.47981 4.63023 4.65594 4.68816 4.72528 4.76515 4.86004 4.92286 4.97217 5.02942 5.05460 5.09587 5.11912 5.17398 5.28938 5.32826 5.34900 5.49374 5.56639 5.62084 5.69781 5.95142 6.15644 6.48435 6.61392 6.76110 7.48770 7.57900 8.34826 8.58390 9.49978 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008720 B = 0.005067 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3210.095135 B = 5524.228897 C = 7258.293892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.318 6.318 3 C 0.077 3.923 4 C 0.031 3.969 5 N -0.464 5.464 6 C 0.088 3.912 7 C -0.137 4.137 8 C 0.538 3.462 9 O -0.486 6.486 10 N -0.601 5.601 11 C 0.100 3.900 12 C -0.131 4.131 13 C -0.109 4.109 14 C -0.128 4.128 15 C 0.150 3.850 16 H 0.096 0.904 17 C 0.164 3.836 18 H 0.060 0.940 19 C -0.160 4.160 20 N -0.704 5.704 21 C -0.152 4.152 22 H 0.053 0.947 23 C -0.094 4.094 24 N -0.980 5.980 25 Si 0.948 3.052 26 H -0.283 1.283 27 H -0.300 1.300 28 H -0.296 1.296 29 C -0.053 4.053 30 C -0.095 4.095 31 H 0.076 0.924 32 H 0.125 0.875 33 H 0.065 0.935 34 H 0.195 0.805 35 H 0.157 0.843 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.043 0.957 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.037 0.963 43 H 0.080 0.920 44 H 0.029 0.971 45 H 0.071 0.929 46 H 0.045 0.955 47 H 0.369 0.631 48 H 0.239 0.761 49 H 0.064 0.936 50 H 0.091 0.909 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.333 -5.842 -19.462 23.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.230 6.230 3 C 0.029 3.971 4 C -0.127 4.127 5 N -0.174 5.174 6 C -0.070 4.070 7 C -0.143 4.143 8 C 0.323 3.677 9 O -0.359 6.359 10 N -0.336 5.336 11 C -0.022 4.022 12 C -0.170 4.170 13 C -0.146 4.146 14 C -0.166 4.166 15 C 0.047 3.953 16 H 0.114 0.886 17 C 0.056 3.944 18 H 0.078 0.922 19 C -0.220 4.220 20 N -0.344 5.344 21 C -0.285 4.285 22 H 0.071 0.929 23 C -0.283 4.283 24 N -0.635 5.635 25 Si 0.781 3.219 26 H -0.210 1.210 27 H -0.227 1.227 28 H -0.224 1.224 29 C -0.062 4.062 30 C -0.151 4.151 31 H 0.094 0.906 32 H 0.143 0.857 33 H 0.084 0.916 34 H 0.211 0.789 35 H 0.175 0.825 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.062 0.938 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.056 0.944 43 H 0.098 0.902 44 H 0.048 0.952 45 H 0.090 0.910 46 H 0.064 0.936 47 H 0.203 0.797 48 H 0.048 0.952 49 H 0.082 0.918 50 H 0.110 0.890 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.401 -5.767 -18.858 22.778 hybrid contribution 0.233 -0.346 1.818 1.865 sum -11.169 -6.112 -17.039 21.271 Atomic orbital electron populations 1.23506 0.75618 1.06323 1.02795 1.86079 1.23975 1.24730 1.88253 1.19671 0.91676 0.86907 0.98826 1.23494 1.01977 0.86276 1.00981 1.67551 1.11422 1.27007 1.11402 1.22717 0.88723 0.98032 0.97530 1.20947 0.95321 0.94313 1.03684 1.18252 0.86493 0.80840 0.82079 1.91089 1.63415 1.47012 1.34366 1.47867 1.06605 1.50830 1.28251 1.22040 0.95787 0.92700 0.91641 1.21902 0.97154 0.95485 1.02417 1.21476 0.94257 1.01030 0.97846 1.21923 1.00953 0.94836 0.98936 1.21591 0.78511 0.96759 0.98413 0.88601 1.20815 0.91777 0.96294 0.85523 0.92232 1.22417 0.98445 1.00767 1.00346 1.42495 1.81005 1.08551 1.02371 1.19160 1.31185 0.92497 0.85702 0.92901 1.25098 1.06591 0.96623 0.99986 1.69757 1.58680 1.07291 1.27816 0.85533 0.77428 0.76772 0.82175 1.20987 1.22716 1.22435 1.19851 0.92028 0.95298 0.99007 1.20541 0.98242 0.93786 1.02547 0.90591 0.85665 0.91637 0.78883 0.82546 0.89285 0.90008 0.88070 0.93788 0.89696 0.91077 0.94428 0.90166 0.95204 0.91040 0.93625 0.79719 0.95247 0.91776 0.88980 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.82 113.37 1.11 1.24 16 2 O -0.32 -6.88 9.61 -92.70 -0.89 -7.77 16 3 C 0.08 2.03 6.68 22.56 0.15 2.18 16 4 C 0.03 0.75 10.21 84.83 0.87 1.61 16 5 N -0.46 -13.83 10.34 -194.39 -2.01 -15.84 16 6 C 0.09 2.87 8.60 85.03 0.73 3.60 16 7 C -0.14 -4.77 4.93 -20.01 -0.10 -4.87 16 8 C 0.54 20.92 5.83 86.79 0.51 21.43 16 9 O -0.49 -23.37 9.18 -3.87 -0.04 -23.40 16 10 N -0.60 -19.01 2.97 -798.43 -2.37 -21.39 16 11 C 0.10 2.33 5.96 86.36 0.51 2.85 16 12 C -0.13 -2.82 6.08 30.67 0.19 -2.64 16 13 C -0.11 -2.30 5.88 30.63 0.18 -2.12 16 14 C -0.13 -3.77 4.88 30.68 0.15 -3.62 16 15 C 0.15 4.71 2.72 44.97 0.12 4.84 16 16 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 17 C 0.16 6.69 1.88 44.99 0.08 6.77 16 18 H 0.06 2.72 5.91 -6.81 -0.04 2.68 16 19 C -0.16 -5.73 9.13 71.98 0.66 -5.07 16 20 N -0.70 -36.39 3.61 -322.91 -1.16 -37.56 16 21 C -0.15 -9.03 7.98 84.03 0.67 -8.36 16 22 H 0.05 3.20 7.83 -2.91 -0.02 3.18 16 23 C -0.09 -5.82 5.50 84.86 0.47 -5.35 16 24 N -0.98 -63.85 13.06 21.65 0.28 -63.56 16 25 Si 0.95 51.39 29.55 68.60 2.03 53.41 16 26 H -0.28 -14.73 7.11 99.48 0.71 -14.02 16 27 H -0.30 -16.35 7.11 99.48 0.71 -15.64 16 28 H -0.30 -16.08 7.11 99.48 0.71 -15.37 16 29 C -0.05 -1.67 5.96 -19.30 -0.12 -1.79 16 30 C -0.09 -2.81 9.06 71.24 0.65 -2.17 16 31 H 0.08 0.60 7.68 -2.39 -0.02 0.58 16 32 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.67 7.67 -2.39 -0.02 0.65 16 34 H 0.19 3.12 6.30 -2.91 -0.02 3.11 16 35 H 0.16 5.13 7.49 -2.91 -0.02 5.11 16 36 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.08 1.96 4.35 -2.39 -0.01 1.95 16 38 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.04 1.45 6.05 -2.39 -0.01 1.44 16 43 H 0.08 2.19 7.03 -2.39 -0.02 2.18 16 44 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.04 1.63 7.04 -2.39 -0.02 1.61 16 47 H 0.37 20.48 5.64 -92.71 -0.52 19.96 16 48 H 0.24 15.40 8.31 -92.71 -0.77 14.63 16 49 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 50 H 0.09 2.25 7.52 -2.39 -0.02 2.23 16 51 H 0.06 1.95 7.24 -2.39 -0.02 1.93 16 Total: -1.00 -78.87 388.22 3.07 -75.80 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: 0.40 Total: 31.76 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 6.83 Total: 8.55 kcal Atomic # 7 Polarization: -133.09 SS G_CDS: -5.26 Total: -138.35 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.93 Total: -31.18 kcal Atomic # 14 Polarization: 51.39 SS G_CDS: 2.03 Total: 53.41 kcal Total: -78.87 3.07 -75.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660441422.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.130 kcal (2) G-P(sol) polarization free energy of solvation -78.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds