Wall clock time and date at job start Wed Apr 1 2020 04:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38360 * 119.40504 * 2 1 4 4 C 1.38334 * 119.45475 * 179.97438 * 3 2 1 5 5 C 1.50705 * 120.82429 * 179.97438 * 4 3 2 6 6 C 1.39989 * 118.35045 * 0.25462 * 4 3 2 7 7 C 1.47527 * 120.59364 * 179.72210 * 6 4 3 8 8 O 1.21591 * 120.00038 * 90.00167 * 7 6 4 9 9 N 1.34780 * 120.00263 * 269.99549 * 7 6 4 10 10 C 1.46935 * 120.62685 * 359.72602 * 9 7 6 11 11 C 1.52760 * 109.00667 * 233.58281 * 10 9 7 12 12 C 1.53050 * 109.38140 * 305.58632 * 11 10 9 13 13 C 1.53042 * 109.53416 * 61.24466 * 12 11 10 14 14 H 1.08993 * 109.52708 * 58.60365 * 13 12 11 15 15 C 1.53007 * 109.49417 * 178.68472 * 13 12 11 16 16 N 1.46498 * 109.46804 * 184.83681 * 15 13 12 17 17 C 1.46505 * 119.99939 * 90.00158 * 16 15 13 18 18 C 1.36933 * 119.99923 * 269.99247 * 16 15 13 19 19 H 1.08005 * 120.00021 * 22.43898 * 18 16 15 20 20 C 1.38813 * 120.00178 * 202.43069 * 18 16 15 21 21 N 1.31619 * 119.99993 * 13.77913 * 20 18 16 22 22 Si 1.86798 * 120.00024 * 193.77364 * 20 18 16 23 23 H 1.48500 * 109.47437 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47146 * 120.00333 * 22 20 18 25 25 H 1.48498 * 109.47284 * 240.00217 * 22 20 18 26 26 C 1.46924 * 120.63446 * 180.02562 * 9 7 6 27 27 C 1.40279 * 118.81006 * 359.52908 * 6 4 3 28 28 O 1.35417 * 119.80407 * 180.23024 * 27 6 4 29 29 N 1.31884 * 119.40865 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47031 * 90.00033 * 1 2 3 31 31 H 1.09006 * 109.46742 * 209.99697 * 1 2 3 32 32 H 1.08999 * 109.47392 * 329.99499 * 1 2 3 33 33 H 1.07994 * 120.27305 * 0.02562 * 3 2 1 34 34 H 1.09005 * 109.46604 * 90.00165 * 5 4 3 35 35 H 1.08995 * 109.47402 * 210.00026 * 5 4 3 36 36 H 1.08997 * 109.47019 * 330.00414 * 5 4 3 37 37 H 1.08998 * 109.58375 * 353.41701 * 10 9 7 38 38 H 1.08995 * 109.58365 * 113.84197 * 10 9 7 39 39 H 1.08999 * 109.56298 * 185.55346 * 11 10 9 40 40 H 1.08997 * 109.38630 * 65.51300 * 11 10 9 41 41 H 1.08995 * 109.46098 * 301.22318 * 12 11 10 42 42 H 1.08997 * 109.45779 * 181.26396 * 12 11 10 43 43 H 1.09005 * 109.46928 * 304.83515 * 15 13 12 44 44 H 1.08998 * 109.47274 * 64.83057 * 15 13 12 45 45 H 1.08999 * 109.47336 * 95.12714 * 17 16 15 46 46 H 1.09000 * 109.46531 * 215.12325 * 17 16 15 47 47 H 1.08999 * 109.46877 * 335.12199 * 17 16 15 48 48 H 0.96995 * 119.99907 * 180.02562 * 21 20 18 49 49 H 1.08995 * 109.58936 * 246.16144 * 26 9 7 50 50 H 1.08997 * 109.58483 * 6.44502 * 26 9 7 51 51 H 0.96705 * 113.99704 * 270.25208 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5696 1.2065 0.0005 5 6 4.3407 2.5014 0.0000 6 6 4.2355 -0.0248 -0.0044 7 6 5.7097 -0.0813 -0.0102 8 8 6.3212 -0.1066 1.0404 9 7 6.3786 -0.1049 -1.1801 10 6 5.6533 -0.0810 -2.4577 11 6 6.1131 -1.2603 -3.3130 12 6 7.6367 -1.2219 -3.4538 13 6 8.2816 -1.3451 -2.0714 14 1 7.9641 -2.2766 -1.6030 15 6 9.8048 -1.3396 -2.2163 16 7 10.4206 -1.5732 -0.9077 17 6 10.7125 -2.9402 -0.4690 18 6 10.7235 -0.5137 -0.0947 19 1 10.2098 0.4279 -0.2209 20 6 11.6906 -0.6501 0.8917 21 7 12.5023 -1.6861 0.8788 22 14 11.8402 0.6369 2.2373 23 1 10.8178 1.6934 2.0278 24 1 11.6262 -0.0029 3.5602 25 1 13.1950 1.2432 2.1941 26 6 7.8465 -0.1617 -1.2021 27 6 3.4758 -1.2041 0.0004 28 8 4.0992 -2.4063 0.0005 29 7 2.1546 -1.1489 -0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.6411 2.1376 0.0004 34 1 4.5262 2.8142 1.0276 35 1 5.2915 2.3579 -0.5134 36 1 3.7622 3.2686 -0.5145 37 1 4.5824 -0.1622 -2.2715 38 1 5.8657 0.8512 -2.9810 39 1 5.6548 -1.1961 -4.2999 40 1 5.8155 -2.1928 -2.8336 41 1 7.9354 -0.2788 -3.9112 42 1 7.9641 -2.0500 -4.0825 43 1 10.1070 -2.1278 -2.9060 44 1 10.1295 -0.3739 -2.6037 45 1 11.7475 -3.1851 -0.7073 46 1 10.5597 -3.0166 0.6075 47 1 10.0474 -3.6358 -0.9807 48 1 13.1778 -1.7815 1.5682 49 1 8.2418 0.7638 -1.6207 50 1 8.2223 -0.2935 -0.1875 51 1 4.2806 -2.7553 -0.8829 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690191859.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:07 Heat of formation + Delta-G solvation = -21.587876 kcal Electronic energy + Delta-G solvation = -32344.098398 eV Core-core repulsion = 28244.315497 eV Total energy + Delta-G solvation = -4099.782901 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.23757 -39.55913 -37.55111 -37.49224 -35.49025 -34.45118 -32.92587 -32.00122 -31.65634 -30.18893 -28.71529 -27.83613 -25.97006 -25.75858 -25.17437 -23.39053 -22.56952 -21.89472 -20.90250 -19.88670 -19.17358 -18.62988 -17.48497 -17.28561 -16.64498 -16.18806 -15.59391 -14.94859 -14.85529 -14.72570 -14.45458 -14.37936 -13.93397 -13.71740 -13.60311 -13.50959 -13.27895 -13.19653 -13.08218 -12.76496 -12.69447 -12.51731 -12.28320 -12.24727 -12.06060 -11.82691 -11.72433 -11.22575 -11.05063 -10.81613 -10.76505 -10.59033 -10.36096 -10.26617 -10.16548 -10.11774 -9.82213 -9.76771 -9.59954 -9.47254 -8.96415 -8.45617 -8.42215 -6.66128 -5.64225 -3.10066 0.56234 0.84358 2.66426 3.01595 3.21727 3.37057 3.45741 3.53986 3.56617 4.17918 4.25173 4.43962 4.57766 4.71829 4.73012 4.87524 4.93346 4.98776 5.04608 5.10865 5.22033 5.29643 5.31317 5.33379 5.37012 5.46439 5.54062 5.54465 5.66415 5.73122 5.76089 5.78976 5.86292 5.89238 6.07347 6.09244 6.15287 6.20001 6.28471 6.47078 6.59098 6.73089 6.83058 6.86163 6.99192 7.24266 7.46884 7.54829 7.62844 7.79626 7.88632 8.30822 8.47272 9.31535 9.95754 10.43910 11.40440 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013639 B = 0.003354 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.495297 B = 8346.567372 C = 9202.553810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.162 3.838 3 C -0.187 4.187 4 C 0.008 3.992 5 C -0.124 4.124 6 C -0.190 4.190 7 C 0.568 3.432 8 O -0.512 6.512 9 N -0.604 5.604 10 C 0.108 3.892 11 C -0.132 4.132 12 C -0.114 4.114 13 C -0.120 4.120 14 H 0.067 0.933 15 C 0.159 3.841 16 N -0.601 5.601 17 C 0.163 3.837 18 C -0.251 4.251 19 H 0.069 0.931 20 C 0.003 3.997 21 N -0.907 5.907 22 Si 0.899 3.101 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.292 1.292 26 C 0.122 3.878 27 C 0.352 3.648 28 O -0.469 6.469 29 N -0.506 5.506 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.143 0.857 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.047 0.953 45 H 0.030 0.970 46 H 0.040 0.960 47 H -0.004 1.004 48 H 0.251 0.749 49 H 0.060 0.940 50 H 0.116 0.884 51 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.434 5.525 -10.466 26.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.025 3.975 3 C -0.207 4.207 4 C 0.000 4.000 5 C -0.180 4.180 6 C -0.196 4.196 7 C 0.353 3.647 8 O -0.386 6.386 9 N -0.337 5.337 10 C -0.015 4.015 11 C -0.170 4.170 12 C -0.152 4.152 13 C -0.142 4.142 14 H 0.085 0.915 15 C 0.030 3.970 16 N -0.324 5.324 17 C 0.019 3.981 18 C -0.380 4.380 19 H 0.087 0.913 20 C -0.195 4.195 21 N -0.552 5.552 22 Si 0.729 3.271 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.219 1.219 26 C 0.001 3.999 27 C 0.173 3.827 28 O -0.276 6.276 29 N -0.226 5.226 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.161 0.839 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.048 0.952 46 H 0.059 0.941 47 H 0.014 0.986 48 H 0.061 0.939 49 H 0.079 0.921 50 H 0.134 0.866 51 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -23.351 4.704 -9.155 25.519 hybrid contribution 0.620 1.127 0.309 1.323 sum -22.732 5.832 -8.846 25.080 Atomic orbital electron populations 1.20781 0.88203 1.03885 1.03397 1.21150 0.96918 0.87087 0.92394 1.21756 0.93572 0.99570 1.05759 1.20275 0.93633 0.94244 0.91871 1.20939 1.00160 0.92952 1.03974 1.20939 0.95472 0.94050 1.09178 1.17803 0.85764 0.76936 0.84159 1.90888 1.68499 1.48265 1.30989 1.48275 1.08262 1.72507 1.04673 1.21579 0.95826 0.99216 0.84883 1.21838 0.97721 0.98114 0.99375 1.21557 0.93618 1.01958 0.98059 1.22256 0.99799 0.98411 0.93761 0.91489 1.20703 0.88979 0.99035 0.88248 1.43894 1.70971 1.03187 1.14322 1.20768 0.96642 0.82973 0.97739 1.19190 1.15190 0.92675 1.10968 0.91280 1.24974 0.96162 0.97812 1.00583 1.70079 1.20156 1.30446 1.34522 0.86261 0.77153 0.81202 0.82463 1.20220 1.21610 1.21907 1.21923 0.75730 0.97620 1.04588 1.18996 0.86269 0.84554 0.92931 1.84800 1.76613 1.32534 1.33650 1.67045 1.09110 1.30403 1.16021 0.89977 0.90150 0.90278 0.83887 0.89494 0.90592 0.90219 0.91191 0.91293 0.91089 0.91947 0.91967 0.91836 0.94270 0.93463 0.95186 0.94121 0.98590 0.93924 0.92149 0.86565 0.74073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.16 36.01 0.37 -0.29 16 2 C 0.16 1.62 6.78 -82.53 -0.56 1.06 16 3 C -0.19 -1.69 9.41 -39.50 -0.37 -2.06 16 4 C 0.01 0.09 5.95 -103.93 -0.62 -0.53 16 5 C -0.12 -1.20 9.69 36.01 0.35 -0.85 16 6 C -0.19 -2.69 3.66 -104.69 -0.38 -3.07 16 7 C 0.57 9.78 5.30 -12.47 -0.07 9.71 16 8 O -0.51 -11.56 16.52 5.29 0.09 -11.47 16 9 N -0.60 -9.04 2.98 -174.29 -0.52 -9.56 16 10 C 0.11 1.16 6.31 -3.93 -0.02 1.13 16 11 C -0.13 -1.30 6.07 -26.83 -0.16 -1.46 16 12 C -0.11 -1.37 5.17 -26.68 -0.14 -1.51 16 13 C -0.12 -1.99 2.55 -90.52 -0.23 -2.22 16 14 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 15 C 0.16 3.12 5.15 -4.04 -0.02 3.10 16 16 N -0.60 -15.05 2.81 -181.11 -0.51 -15.56 16 17 C 0.16 4.13 8.98 59.85 0.54 4.67 16 18 C -0.25 -6.90 8.24 -15.06 -0.12 -7.02 16 19 H 0.07 1.86 6.81 -52.48 -0.36 1.50 16 20 C 0.00 0.08 5.09 -17.43 -0.09 -0.01 16 21 N -0.91 -27.14 10.72 55.49 0.59 -26.54 16 22 Si 0.90 22.93 29.58 -169.99 -5.03 17.90 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 C 0.12 2.18 4.66 -3.73 -0.02 2.16 16 27 C 0.35 4.96 7.63 -16.61 -0.13 4.84 16 28 O -0.47 -6.67 13.01 -17.94 -0.23 -6.90 16 29 N -0.51 -6.53 10.28 -9.21 -0.09 -6.63 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 33 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.85 7.18 -51.93 -0.37 0.47 16 36 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 37 H 0.07 0.68 6.23 -51.93 -0.32 0.36 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 44 H 0.05 0.92 8.04 -51.93 -0.42 0.51 16 45 H 0.03 0.81 7.35 -51.93 -0.38 0.43 16 46 H 0.04 1.12 7.32 -51.93 -0.38 0.74 16 47 H 0.00 -0.10 8.03 -51.93 -0.42 -0.52 16 48 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 49 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 50 H 0.12 2.67 5.41 -51.93 -0.28 2.39 16 51 H 0.40 3.80 9.06 45.56 0.41 4.21 16 LS Contribution 405.47 15.07 6.11 6.11 Total: -1.00 -35.93 405.47 -8.83 -44.76 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -7.56 Total: 0.23 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -1.68 Total: 7.66 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.53 Total: -58.29 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.15 Total: -18.37 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.03 Total: 17.90 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.93 -8.83 -44.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690191859.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.174 kcal (2) G-P(sol) polarization free energy of solvation -35.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds