Wall clock time and date at job start Wed Apr 1 2020 04:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38360 * 119.40504 * 2 1 4 4 C 1.38334 * 119.45475 * 179.97438 * 3 2 1 5 5 C 1.50705 * 120.82429 * 179.97438 * 4 3 2 6 6 C 1.39989 * 118.35045 * 0.25462 * 4 3 2 7 7 C 1.47527 * 120.59364 * 179.72210 * 6 4 3 8 8 O 1.21591 * 120.00038 * 90.00167 * 7 6 4 9 9 N 1.34780 * 120.00263 * 269.99549 * 7 6 4 10 10 C 1.46935 * 120.62685 * 359.72602 * 9 7 6 11 11 C 1.52760 * 109.00667 * 233.58281 * 10 9 7 12 12 C 1.53050 * 109.38140 * 305.58632 * 11 10 9 13 13 C 1.53042 * 109.53416 * 61.24466 * 12 11 10 14 14 H 1.08993 * 109.52708 * 58.60365 * 13 12 11 15 15 C 1.53007 * 109.49417 * 178.68472 * 13 12 11 16 16 N 1.46498 * 109.46804 * 184.83681 * 15 13 12 17 17 C 1.46505 * 119.99939 * 90.00158 * 16 15 13 18 18 C 1.36933 * 119.99923 * 269.99247 * 16 15 13 19 19 H 1.08005 * 120.00021 * 22.43898 * 18 16 15 20 20 C 1.38813 * 120.00178 * 202.43069 * 18 16 15 21 21 N 1.31619 * 119.99993 * 13.77913 * 20 18 16 22 22 Si 1.86798 * 120.00024 * 193.77364 * 20 18 16 23 23 H 1.48500 * 109.47437 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47146 * 120.00333 * 22 20 18 25 25 H 1.48498 * 109.47284 * 240.00217 * 22 20 18 26 26 C 1.46924 * 120.63446 * 180.02562 * 9 7 6 27 27 C 1.40279 * 118.81006 * 359.52908 * 6 4 3 28 28 O 1.35417 * 119.80407 * 180.23024 * 27 6 4 29 29 N 1.31884 * 119.40865 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47031 * 90.00033 * 1 2 3 31 31 H 1.09006 * 109.46742 * 209.99697 * 1 2 3 32 32 H 1.08999 * 109.47392 * 329.99499 * 1 2 3 33 33 H 1.07994 * 120.27305 * 0.02562 * 3 2 1 34 34 H 1.09005 * 109.46604 * 90.00165 * 5 4 3 35 35 H 1.08995 * 109.47402 * 210.00026 * 5 4 3 36 36 H 1.08997 * 109.47019 * 330.00414 * 5 4 3 37 37 H 1.08998 * 109.58375 * 353.41701 * 10 9 7 38 38 H 1.08995 * 109.58365 * 113.84197 * 10 9 7 39 39 H 1.08999 * 109.56298 * 185.55346 * 11 10 9 40 40 H 1.08997 * 109.38630 * 65.51300 * 11 10 9 41 41 H 1.08995 * 109.46098 * 301.22318 * 12 11 10 42 42 H 1.08997 * 109.45779 * 181.26396 * 12 11 10 43 43 H 1.09005 * 109.46928 * 304.83515 * 15 13 12 44 44 H 1.08998 * 109.47274 * 64.83057 * 15 13 12 45 45 H 1.08999 * 109.47336 * 95.12714 * 17 16 15 46 46 H 1.09000 * 109.46531 * 215.12325 * 17 16 15 47 47 H 1.08999 * 109.46877 * 335.12199 * 17 16 15 48 48 H 0.96995 * 119.99907 * 180.02562 * 21 20 18 49 49 H 1.08995 * 109.58936 * 246.16144 * 26 9 7 50 50 H 1.08997 * 109.58483 * 6.44502 * 26 9 7 51 51 H 0.96705 * 113.99704 * 270.25208 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5696 1.2065 0.0005 5 6 4.3407 2.5014 0.0000 6 6 4.2355 -0.0248 -0.0044 7 6 5.7097 -0.0813 -0.0102 8 8 6.3212 -0.1066 1.0404 9 7 6.3786 -0.1049 -1.1801 10 6 5.6533 -0.0810 -2.4577 11 6 6.1131 -1.2603 -3.3130 12 6 7.6367 -1.2219 -3.4538 13 6 8.2816 -1.3451 -2.0714 14 1 7.9641 -2.2766 -1.6030 15 6 9.8048 -1.3396 -2.2163 16 7 10.4206 -1.5732 -0.9077 17 6 10.7125 -2.9402 -0.4690 18 6 10.7235 -0.5137 -0.0947 19 1 10.2098 0.4279 -0.2209 20 6 11.6906 -0.6501 0.8917 21 7 12.5023 -1.6861 0.8788 22 14 11.8402 0.6369 2.2373 23 1 10.8178 1.6934 2.0278 24 1 11.6262 -0.0029 3.5602 25 1 13.1950 1.2432 2.1941 26 6 7.8465 -0.1617 -1.2021 27 6 3.4758 -1.2041 0.0004 28 8 4.0992 -2.4063 0.0005 29 7 2.1546 -1.1489 -0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.6411 2.1376 0.0004 34 1 4.5262 2.8142 1.0276 35 1 5.2915 2.3579 -0.5134 36 1 3.7622 3.2686 -0.5145 37 1 4.5824 -0.1622 -2.2715 38 1 5.8657 0.8512 -2.9810 39 1 5.6548 -1.1961 -4.2999 40 1 5.8155 -2.1928 -2.8336 41 1 7.9354 -0.2788 -3.9112 42 1 7.9641 -2.0500 -4.0825 43 1 10.1070 -2.1278 -2.9060 44 1 10.1295 -0.3739 -2.6037 45 1 11.7475 -3.1851 -0.7073 46 1 10.5597 -3.0166 0.6075 47 1 10.0474 -3.6358 -0.9807 48 1 13.1778 -1.7815 1.5682 49 1 8.2418 0.7638 -1.6207 50 1 8.2223 -0.2935 -0.1875 51 1 4.2806 -2.7553 -0.8829 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690191859.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:55 Heat of formation + Delta-G solvation = -48.759482 kcal Electronic energy + Delta-G solvation = -32345.276647 eV Core-core repulsion = 28244.315497 eV Total energy + Delta-G solvation = -4100.961150 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 12.40 seconds Orbital eigenvalues (eV) -42.23878 -40.71286 -38.90330 -38.50873 -37.23920 -35.39124 -34.37507 -33.14838 -32.80660 -31.82661 -29.65482 -28.55468 -27.98789 -27.37131 -26.35037 -24.36318 -24.04739 -22.81611 -22.28158 -21.26786 -20.35588 -19.60696 -18.82719 -18.38986 -18.24490 -17.44120 -16.95121 -16.64173 -16.09554 -15.77449 -15.53067 -15.44442 -15.23638 -15.00352 -14.91645 -14.77160 -14.30906 -14.25544 -14.02792 -13.97585 -13.84571 -13.78723 -13.42589 -13.25826 -13.01885 -12.88956 -12.83700 -12.79114 -12.65676 -12.59947 -12.36381 -12.07697 -12.04931 -11.87188 -11.75899 -11.60515 -11.33177 -11.24635 -10.64006 -10.62464 -10.50694 -9.84619 -9.69508 -8.75051 -7.82990 -5.29061 -0.31587 -0.00380 1.37113 1.38415 1.42369 1.50474 1.89186 2.32546 2.48088 2.48836 3.25686 3.31300 3.52343 3.53235 3.65791 3.84702 3.92491 4.00048 4.07197 4.10072 4.18352 4.26664 4.35785 4.46515 4.49691 4.55388 4.59489 4.60400 4.79482 4.82232 4.83394 4.84059 4.88881 4.93957 4.97397 4.99060 5.02813 5.09065 5.16441 5.17339 5.20592 5.34313 5.41234 5.50008 5.52387 5.58685 5.64653 5.69247 6.30003 6.33100 6.40316 6.77543 7.03017 7.15594 7.88829 8.31600 9.20209 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013639 B = 0.003354 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.495297 B = 8346.567372 C = 9202.553810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.160 3.840 3 C -0.170 4.170 4 C 0.004 3.996 5 C -0.122 4.122 6 C -0.212 4.212 7 C 0.569 3.431 8 O -0.584 6.584 9 N -0.595 5.595 10 C 0.104 3.896 11 C -0.126 4.126 12 C -0.106 4.106 13 C -0.105 4.105 14 H 0.044 0.956 15 C 0.155 3.845 16 N -0.618 5.618 17 C 0.179 3.821 18 C -0.242 4.242 19 H 0.070 0.930 20 C -0.056 4.056 21 N -0.938 5.938 22 Si 0.952 3.048 23 H -0.273 1.273 24 H -0.300 1.300 25 H -0.284 1.284 26 C 0.129 3.871 27 C 0.338 3.662 28 O -0.492 6.492 29 N -0.525 5.525 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.187 0.813 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.119 0.881 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.050 0.950 45 H 0.008 0.992 46 H 0.004 0.996 47 H 0.028 0.972 48 H 0.245 0.755 49 H 0.065 0.935 50 H 0.058 0.942 51 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.241 7.444 -13.355 31.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.022 3.978 3 C -0.189 4.189 4 C -0.004 4.004 5 C -0.178 4.178 6 C -0.218 4.218 7 C 0.356 3.644 8 O -0.464 6.464 9 N -0.327 5.327 10 C -0.017 4.017 11 C -0.164 4.164 12 C -0.144 4.144 13 C -0.127 4.127 14 H 0.063 0.937 15 C 0.029 3.971 16 N -0.341 5.341 17 C 0.033 3.967 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.250 4.250 21 N -0.586 5.586 22 Si 0.782 3.218 23 H -0.198 1.198 24 H -0.227 1.227 25 H -0.211 1.211 26 C 0.006 3.994 27 C 0.159 3.841 28 O -0.302 6.302 29 N -0.246 5.246 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.125 0.875 33 H 0.205 0.795 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.138 0.862 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.128 0.872 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.027 0.973 46 H 0.023 0.977 47 H 0.046 0.954 48 H 0.055 0.945 49 H 0.083 0.917 50 H 0.077 0.923 51 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -27.205 6.637 -12.143 30.522 hybrid contribution 1.641 0.549 1.127 2.065 sum -25.563 7.185 -11.016 28.748 Atomic orbital electron populations 1.20932 0.85232 1.04890 1.04959 1.21937 0.98768 0.86636 0.90412 1.22174 0.92424 1.01011 1.03305 1.20555 0.94850 0.93561 0.91426 1.20982 0.99769 0.93337 1.03732 1.20747 0.93190 0.95602 1.12296 1.18334 0.87158 0.75381 0.83528 1.90839 1.70280 1.51759 1.33542 1.48287 1.07191 1.71093 1.06099 1.21919 0.96226 1.00820 0.82752 1.21844 0.95998 0.97464 1.01106 1.21514 0.94919 1.03385 0.94599 1.21989 0.97610 0.96594 0.96523 0.93718 1.20958 0.90487 0.99747 0.85931 1.44133 1.71307 1.02385 1.16265 1.20478 0.96109 0.84193 0.95876 1.19456 1.13713 0.93175 1.10860 0.91199 1.25634 0.96804 0.99800 1.02810 1.70210 1.21094 1.32136 1.35174 0.85409 0.77323 0.79356 0.79714 1.19752 1.22714 1.21089 1.21554 0.77829 0.98439 1.01532 1.19075 0.86872 0.84192 0.93962 1.84752 1.77006 1.33167 1.35289 1.67128 1.08328 1.32101 1.17033 0.87927 0.90953 0.87485 0.79541 0.90337 0.92592 0.86238 0.89701 0.89198 0.87187 0.92178 0.90577 0.90287 0.92528 0.93124 0.97346 0.97709 0.95390 0.94519 0.91661 0.92322 0.72452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 10.16 71.24 0.72 -0.14 16 2 C 0.16 2.70 6.78 42.58 0.29 2.99 16 3 C -0.17 -2.41 9.41 22.32 0.21 -2.20 16 4 C 0.00 0.08 5.95 -19.42 -0.12 -0.03 16 5 C -0.12 -2.13 9.69 71.24 0.69 -1.44 16 6 C -0.21 -5.96 3.66 -19.91 -0.07 -6.04 16 7 C 0.57 20.40 5.30 86.69 0.46 20.86 16 8 O -0.58 -28.49 16.52 -4.00 -0.07 -28.56 16 9 N -0.60 -17.93 2.98 -823.58 -2.45 -20.38 16 10 C 0.10 1.96 6.31 86.22 0.54 2.50 16 11 C -0.13 -2.03 6.07 30.53 0.19 -1.84 16 12 C -0.11 -2.22 5.17 30.63 0.16 -2.07 16 13 C -0.11 -3.44 2.55 -10.73 -0.03 -3.47 16 14 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 15 C 0.15 6.04 5.15 86.38 0.44 6.48 16 16 N -0.62 -31.83 2.81 -726.91 -2.04 -33.87 16 17 C 0.18 9.39 8.98 127.77 1.15 10.53 16 18 C -0.24 -13.78 8.24 84.03 0.69 -13.09 16 19 H 0.07 3.90 6.81 -2.91 -0.02 3.88 16 20 C -0.06 -3.34 5.09 84.86 0.43 -2.91 16 21 N -0.94 -58.59 10.72 21.65 0.23 -58.36 16 22 Si 0.95 49.13 29.58 68.60 2.03 51.16 16 23 H -0.27 -13.67 7.11 99.48 0.71 -12.97 16 24 H -0.30 -15.83 7.11 99.48 0.71 -15.12 16 25 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 26 C 0.13 4.72 4.66 86.35 0.40 5.12 16 27 C 0.34 9.49 7.63 85.13 0.65 10.14 16 28 O -0.49 -14.49 13.01 -87.11 -1.13 -15.63 16 29 N -0.52 -12.84 10.28 -296.06 -3.04 -15.89 16 30 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.11 0.33 8.07 -2.39 -0.02 0.31 16 33 H 0.19 0.99 8.06 -2.91 -0.02 0.97 16 34 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.06 1.20 7.18 -2.39 -0.02 1.19 16 36 H 0.12 1.08 8.10 -2.39 -0.02 1.06 16 37 H 0.08 1.41 6.23 -2.39 -0.01 1.40 16 38 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.06 2.01 8.07 -2.38 -0.02 2.00 16 44 H 0.05 1.94 8.04 -2.39 -0.02 1.92 16 45 H 0.01 0.47 7.35 -2.39 -0.02 0.45 16 46 H 0.00 0.24 7.32 -2.39 -0.02 0.22 16 47 H 0.03 1.25 8.03 -2.39 -0.02 1.23 16 48 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 49 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 50 H 0.06 2.88 5.41 -2.39 -0.01 2.87 16 51 H 0.41 8.10 9.06 -74.05 -0.67 7.43 16 Total: -1.00 -86.27 405.47 0.60 -85.67 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.27 Total: 10.46 kcal Atomic # 6 Polarization: 18.58 SS G_CDS: 6.81 Total: 25.39 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -7.31 Total: -128.50 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -1.20 Total: -44.18 kcal Atomic # 14 Polarization: 49.13 SS G_CDS: 2.03 Total: 51.16 kcal Total: -86.27 0.60 -85.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690191859.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.915 kcal (2) G-P(sol) polarization free energy of solvation -86.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.40 seconds