Wall clock time and date at job start Wed Apr 1 2020 05:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35919 * 117.00310 * 2 1 4 4 C 1.38847 * 120.40642 * 359.97438 * 3 2 1 5 5 N 1.31887 * 121.00335 * 180.02562 * 4 3 2 6 6 C 1.31681 * 121.93457 * 359.70351 * 5 4 3 7 7 C 1.39525 * 120.69575 * 0.58895 * 6 5 4 8 8 C 1.47854 * 120.53136 * 179.70085 * 7 6 5 9 9 O 1.21547 * 120.00094 * 126.01921 * 8 7 6 10 10 N 1.34778 * 119.99852 * 306.01185 * 8 7 6 11 11 C 1.46935 * 120.60709 * 354.28276 * 10 8 7 12 12 C 1.53189 * 108.77101 * 233.53091 * 11 10 8 13 13 C 1.53046 * 109.33636 * 305.41087 * 12 11 10 14 14 C 1.53042 * 109.53724 * 61.35103 * 13 12 11 15 15 H 1.08999 * 109.49446 * 58.61509 * 14 13 12 16 16 C 1.53001 * 109.49643 * 178.68030 * 14 13 12 17 17 C 1.53000 * 109.47040 * 184.99910 * 16 14 13 18 18 N 1.46500 * 109.47178 * 180.02562 * 17 16 14 19 19 C 1.36937 * 120.00131 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99797 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.00070 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00103 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00122 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46816 * 89.99673 * 23 21 19 25 25 H 1.48498 * 109.47049 * 209.99319 * 23 21 19 26 26 H 1.48499 * 109.47161 * 329.99943 * 23 21 19 27 27 C 1.46926 * 120.62935 * 174.25146 * 10 8 7 28 28 C 1.38845 * 120.40597 * 180.02562 * 3 2 1 29 29 C 1.50701 * 120.87781 * 359.97438 * 28 3 2 30 30 H 1.09002 * 109.46885 * 299.99845 * 1 2 3 31 31 H 1.09008 * 109.47467 * 59.99396 * 1 2 3 32 32 H 1.08998 * 109.47959 * 179.97438 * 1 2 3 33 33 H 1.08002 * 119.50174 * 0.02562 * 4 3 2 34 34 H 1.08009 * 119.64909 * 180.28727 * 6 5 4 35 35 H 1.08999 * 109.55954 * 113.75969 * 11 10 8 36 36 H 1.09004 * 109.61241 * 353.32999 * 11 10 8 37 37 H 1.08994 * 109.49847 * 185.44473 * 12 11 10 38 38 H 1.08993 * 109.49842 * 65.37984 * 12 11 10 39 39 H 1.09005 * 109.45619 * 181.36794 * 13 12 11 40 40 H 1.08996 * 109.45974 * 301.34454 * 13 12 11 41 41 H 1.09002 * 109.47181 * 305.00105 * 16 14 13 42 42 H 1.08997 * 109.47258 * 65.00143 * 16 14 13 43 43 H 1.09002 * 109.47293 * 300.00126 * 17 16 14 44 44 H 1.08997 * 109.46904 * 60.00017 * 17 16 14 45 45 H 0.97001 * 119.99366 * 359.97438 * 18 17 16 46 46 H 0.96996 * 120.00267 * 180.02562 * 22 21 19 47 47 H 1.09007 * 109.58429 * 6.65580 * 27 10 8 48 48 H 1.08997 * 109.59016 * 246.22765 * 27 10 8 49 49 H 1.08997 * 109.47086 * 274.89613 * 29 28 3 50 50 H 1.09000 * 109.47395 * 34.89471 * 29 28 3 51 51 H 1.09004 * 109.47111 * 154.89503 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2982 2.3809 -0.0005 5 7 1.8847 3.5621 -0.0010 6 6 3.1954 3.6890 0.0047 7 6 4.0199 2.5635 -0.0007 8 6 5.4912 2.7102 -0.0009 9 8 6.1578 2.1508 0.8477 10 7 6.0931 3.4641 -0.9420 11 6 5.3159 4.0437 -2.0461 12 6 5.9686 3.6419 -3.3725 13 6 7.4427 4.0531 -3.3570 14 6 8.1656 3.3235 -2.2223 15 1 8.0701 2.2469 -2.3631 16 6 9.6460 3.7101 -2.2282 17 6 10.3919 2.8878 -1.1755 18 7 11.8093 3.2583 -1.1806 19 6 12.6795 2.6491 -0.3165 20 1 12.3207 1.8957 0.3692 21 6 14.0223 3.0006 -0.3210 22 7 14.4594 3.9191 -1.1563 23 14 15.2092 2.1700 0.8583 24 1 15.7797 0.9591 0.2153 25 1 16.3054 3.1110 1.2019 26 1 14.4860 1.7795 2.0952 27 6 7.5383 3.7223 -0.8829 28 6 3.4321 1.2934 -0.0005 29 6 4.2809 0.0482 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3635 -1.0276 -0.0005 33 1 0.2197 2.3227 -0.0005 34 1 3.6368 4.6748 0.0088 35 1 5.3089 5.1299 -1.9566 36 1 4.2941 3.6654 -2.0124 37 1 5.4596 4.1438 -4.1952 38 1 5.8934 2.5624 -3.5027 39 1 7.9031 3.7899 -4.3093 40 1 7.5178 5.1294 -3.2023 41 1 10.0697 3.5105 -3.2125 42 1 9.7454 4.7708 -1.9981 43 1 9.9682 3.0874 -0.1912 44 1 10.2925 1.8270 -1.4056 45 1 12.1314 3.9347 -1.7968 46 1 15.3978 4.1645 -1.1597 47 1 7.9824 3.1320 -0.0813 48 1 7.7129 4.7823 -0.6988 49 1 4.4134 -0.3012 1.0234 50 1 3.7889 -0.7269 -0.5881 51 1 5.2543 0.2720 -0.4370 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698673930.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:39 Heat of formation + Delta-G solvation = -33.568469 kcal Electronic energy + Delta-G solvation = -30746.253184 eV Core-core repulsion = 26645.950766 eV Total energy + Delta-G solvation = -4100.302418 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.50550 -40.17198 -38.52375 -37.77047 -35.36329 -34.18088 -33.57730 -32.20671 -31.28297 -30.50113 -28.35055 -28.11212 -27.43097 -25.96183 -24.23671 -23.72998 -22.73155 -22.55341 -20.96157 -20.38218 -19.55974 -18.32320 -17.90318 -16.99529 -16.86142 -16.67493 -16.39047 -16.20988 -15.37885 -14.93676 -14.75569 -14.52799 -14.39768 -14.16636 -13.80703 -13.65025 -13.51888 -13.36889 -13.19644 -13.16286 -13.02619 -12.97229 -12.65144 -12.47343 -12.20993 -12.10917 -11.94676 -11.43995 -11.14989 -11.10670 -11.02338 -10.82350 -10.63656 -10.46603 -10.42081 -10.23277 -9.90045 -9.85989 -9.64331 -9.58375 -8.89753 -8.80508 -8.77783 -6.85437 -5.70933 -2.99014 0.33781 0.77591 2.31834 2.60188 2.86510 3.27174 3.48213 3.53170 3.55403 3.91374 4.05018 4.16942 4.31113 4.44027 4.52010 4.60777 4.66048 4.68249 4.71215 4.81046 4.86430 4.93858 4.99367 5.10948 5.14704 5.22965 5.33529 5.40676 5.41762 5.57779 5.60573 5.61816 5.68344 5.75110 5.78480 5.79555 5.89000 5.96705 6.00876 6.05116 6.21543 6.24816 6.34730 6.45881 6.49724 6.66096 6.92443 6.95588 7.16412 7.40487 7.76866 7.92199 8.48523 9.59381 10.18061 10.52713 11.52143 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016929 B = 0.002134 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.523260 B =13116.078234 C =14076.368178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.305 6.305 3 C 0.072 3.928 4 C 0.033 3.967 5 N -0.453 5.453 6 C 0.098 3.902 7 C -0.139 4.139 8 C 0.565 3.435 9 O -0.518 6.518 10 N -0.602 5.602 11 C 0.103 3.897 12 C -0.134 4.134 13 C -0.116 4.116 14 C -0.095 4.095 15 H 0.074 0.926 16 C -0.118 4.118 17 C 0.150 3.850 18 N -0.734 5.734 19 C -0.236 4.236 20 H 0.070 0.930 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.114 3.886 28 C -0.026 4.026 29 C -0.110 4.110 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.162 0.838 34 H 0.164 0.836 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.021 0.979 44 H 0.017 0.983 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.102 0.898 48 H 0.073 0.927 49 H 0.085 0.915 50 H 0.076 0.924 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.152 -2.336 -3.862 33.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.217 6.217 3 C 0.025 3.975 4 C -0.124 4.124 5 N -0.162 5.162 6 C -0.061 4.061 7 C -0.145 4.145 8 C 0.351 3.649 9 O -0.394 6.394 10 N -0.335 5.335 11 C -0.020 4.020 12 C -0.172 4.172 13 C -0.153 4.153 14 C -0.115 4.115 15 H 0.093 0.907 16 C -0.157 4.157 17 C 0.023 3.977 18 N -0.378 5.378 19 C -0.367 4.367 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.007 4.007 28 C -0.035 4.035 29 C -0.166 4.166 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.123 0.877 33 H 0.179 0.821 34 H 0.181 0.819 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.038 0.962 44 H 0.035 0.965 45 H 0.216 0.784 46 H 0.064 0.936 47 H 0.120 0.880 48 H 0.091 0.909 49 H 0.103 0.897 50 H 0.095 0.905 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -33.169 -2.212 -3.262 33.402 hybrid contribution 0.982 -0.733 0.369 1.280 sum -32.186 -2.946 -2.893 32.450 Atomic orbital electron populations 1.23166 0.77786 1.04641 1.01629 1.86107 1.21679 1.25478 1.88447 1.19719 0.92171 0.86124 0.99526 1.23047 1.00706 0.87045 1.01610 1.67556 1.11697 1.25946 1.10976 1.22827 0.88440 0.98098 0.96703 1.20756 0.94983 0.93914 1.04802 1.17983 0.86343 0.78808 0.81792 1.90852 1.65032 1.45839 1.37674 1.48087 1.09542 1.50542 1.25313 1.21887 0.95207 0.98658 0.86251 1.21912 0.96808 1.02028 0.96435 1.21605 0.94162 1.00530 0.99019 1.21459 0.95342 1.00764 0.93937 0.90744 1.21731 0.92463 1.00775 1.00702 1.20714 0.85789 0.95806 0.95393 1.42372 1.02333 1.48021 1.45076 1.19261 0.89152 1.16008 1.12309 0.91191 1.24741 0.97105 0.99551 0.99838 1.69661 1.14636 1.34312 1.39830 0.86183 0.80968 0.78486 0.80569 1.21767 1.21800 1.20730 1.21911 0.77680 1.01771 0.99382 1.19723 0.90949 0.95531 0.97248 1.20727 0.98707 0.93401 1.03811 0.92271 0.92287 0.87660 0.82090 0.81895 0.90804 0.90064 0.90659 0.91514 0.91323 0.91536 0.91505 0.91723 0.96164 0.96528 0.78368 0.93607 0.87980 0.90919 0.89671 0.90525 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.82 101.05 0.99 1.08 16 2 O -0.31 -2.42 9.76 -19.49 -0.19 -2.61 16 3 C 0.07 0.66 6.68 -39.13 -0.26 0.40 16 4 C 0.03 0.27 10.21 -17.30 -0.18 0.10 16 5 N -0.45 -4.42 10.34 -12.79 -0.13 -4.55 16 6 C 0.10 0.95 8.96 -17.14 -0.15 0.80 16 7 C -0.14 -1.54 4.61 -104.84 -0.48 -2.02 16 8 C 0.56 7.40 6.18 -12.32 -0.08 7.32 16 9 O -0.52 -8.77 15.46 5.32 0.08 -8.68 16 10 N -0.60 -6.83 2.97 -173.87 -0.52 -7.35 16 11 C 0.10 0.85 5.59 -3.71 -0.02 0.83 16 12 C -0.13 -1.08 6.08 -26.61 -0.16 -1.24 16 13 C -0.12 -1.13 5.17 -26.69 -0.14 -1.26 16 14 C -0.10 -1.20 2.34 -90.50 -0.21 -1.41 16 15 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 16 C -0.12 -1.86 4.80 -26.73 -0.13 -1.99 16 17 C 0.15 3.12 6.02 -4.04 -0.02 3.09 16 18 N -0.73 -19.25 5.60 -59.91 -0.34 -19.59 16 19 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 20 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 21 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 22 N -0.94 -28.92 13.06 55.49 0.72 -28.19 16 23 Si 0.91 23.10 29.55 -169.99 -5.02 18.07 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 26 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 27 C 0.11 1.48 5.34 -3.71 -0.02 1.46 16 28 C -0.03 -0.28 5.96 -103.76 -0.62 -0.89 16 29 C -0.11 -1.16 9.10 36.01 0.33 -0.83 16 30 H 0.06 0.16 7.68 -51.93 -0.40 -0.23 16 31 H 0.06 0.15 7.67 -51.92 -0.40 -0.25 16 32 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.16 0.85 6.30 -52.49 -0.33 0.52 16 34 H 0.16 1.29 7.76 -52.48 -0.41 0.88 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.62 5.39 -51.93 -0.28 0.34 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.43 6.70 -51.93 -0.35 0.08 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.38 10.42 7.67 -40.82 -0.31 10.11 16 46 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.10 1.61 5.72 -51.93 -0.30 1.31 16 48 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 49 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 50 H 0.08 0.69 7.77 -51.93 -0.40 0.29 16 51 H 0.07 0.89 6.70 -51.93 -0.35 0.54 16 LS Contribution 403.61 15.07 6.08 6.08 Total: -1.00 -35.08 403.61 -8.85 -43.93 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -8.14 Total: 5.09 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -1.40 Total: -2.20 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.26 Total: -59.68 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -0.11 Total: -11.29 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.08 -8.85 -43.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698673930.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.361 kcal (2) G-P(sol) polarization free energy of solvation -35.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds