Wall clock time and date at job start Wed Apr 1 2020 05:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35919 * 117.00310 * 2 1 4 4 C 1.38847 * 120.40642 * 359.97438 * 3 2 1 5 5 N 1.31887 * 121.00335 * 180.02562 * 4 3 2 6 6 C 1.31681 * 121.93457 * 359.70351 * 5 4 3 7 7 C 1.39525 * 120.69575 * 0.58895 * 6 5 4 8 8 C 1.47854 * 120.53136 * 179.70085 * 7 6 5 9 9 O 1.21547 * 120.00094 * 126.01921 * 8 7 6 10 10 N 1.34778 * 119.99852 * 306.01185 * 8 7 6 11 11 C 1.46935 * 120.60709 * 354.28276 * 10 8 7 12 12 C 1.53189 * 108.77101 * 233.53091 * 11 10 8 13 13 C 1.53046 * 109.33636 * 305.41087 * 12 11 10 14 14 C 1.53042 * 109.53724 * 61.35103 * 13 12 11 15 15 H 1.08999 * 109.49446 * 58.61509 * 14 13 12 16 16 C 1.53001 * 109.49643 * 178.68030 * 14 13 12 17 17 C 1.53000 * 109.47040 * 184.99910 * 16 14 13 18 18 N 1.46500 * 109.47178 * 180.02562 * 17 16 14 19 19 C 1.36937 * 120.00131 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99797 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.00070 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00103 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00122 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46816 * 89.99673 * 23 21 19 25 25 H 1.48498 * 109.47049 * 209.99319 * 23 21 19 26 26 H 1.48499 * 109.47161 * 329.99943 * 23 21 19 27 27 C 1.46926 * 120.62935 * 174.25146 * 10 8 7 28 28 C 1.38845 * 120.40597 * 180.02562 * 3 2 1 29 29 C 1.50701 * 120.87781 * 359.97438 * 28 3 2 30 30 H 1.09002 * 109.46885 * 299.99845 * 1 2 3 31 31 H 1.09008 * 109.47467 * 59.99396 * 1 2 3 32 32 H 1.08998 * 109.47959 * 179.97438 * 1 2 3 33 33 H 1.08002 * 119.50174 * 0.02562 * 4 3 2 34 34 H 1.08009 * 119.64909 * 180.28727 * 6 5 4 35 35 H 1.08999 * 109.55954 * 113.75969 * 11 10 8 36 36 H 1.09004 * 109.61241 * 353.32999 * 11 10 8 37 37 H 1.08994 * 109.49847 * 185.44473 * 12 11 10 38 38 H 1.08993 * 109.49842 * 65.37984 * 12 11 10 39 39 H 1.09005 * 109.45619 * 181.36794 * 13 12 11 40 40 H 1.08996 * 109.45974 * 301.34454 * 13 12 11 41 41 H 1.09002 * 109.47181 * 305.00105 * 16 14 13 42 42 H 1.08997 * 109.47258 * 65.00143 * 16 14 13 43 43 H 1.09002 * 109.47293 * 300.00126 * 17 16 14 44 44 H 1.08997 * 109.46904 * 60.00017 * 17 16 14 45 45 H 0.97001 * 119.99366 * 359.97438 * 18 17 16 46 46 H 0.96996 * 120.00267 * 180.02562 * 22 21 19 47 47 H 1.09007 * 109.58429 * 6.65580 * 27 10 8 48 48 H 1.08997 * 109.59016 * 246.22765 * 27 10 8 49 49 H 1.08997 * 109.47086 * 274.89613 * 29 28 3 50 50 H 1.09000 * 109.47395 * 34.89471 * 29 28 3 51 51 H 1.09004 * 109.47111 * 154.89503 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2982 2.3809 -0.0005 5 7 1.8847 3.5621 -0.0010 6 6 3.1954 3.6890 0.0047 7 6 4.0199 2.5635 -0.0007 8 6 5.4912 2.7102 -0.0009 9 8 6.1578 2.1508 0.8477 10 7 6.0931 3.4641 -0.9420 11 6 5.3159 4.0437 -2.0461 12 6 5.9686 3.6419 -3.3725 13 6 7.4427 4.0531 -3.3570 14 6 8.1656 3.3235 -2.2223 15 1 8.0701 2.2469 -2.3631 16 6 9.6460 3.7101 -2.2282 17 6 10.3919 2.8878 -1.1755 18 7 11.8093 3.2583 -1.1806 19 6 12.6795 2.6491 -0.3165 20 1 12.3207 1.8957 0.3692 21 6 14.0223 3.0006 -0.3210 22 7 14.4594 3.9191 -1.1563 23 14 15.2092 2.1700 0.8583 24 1 15.7797 0.9591 0.2153 25 1 16.3054 3.1110 1.2019 26 1 14.4860 1.7795 2.0952 27 6 7.5383 3.7223 -0.8829 28 6 3.4321 1.2934 -0.0005 29 6 4.2809 0.0482 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3635 -1.0276 -0.0005 33 1 0.2197 2.3227 -0.0005 34 1 3.6368 4.6748 0.0088 35 1 5.3089 5.1299 -1.9566 36 1 4.2941 3.6654 -2.0124 37 1 5.4596 4.1438 -4.1952 38 1 5.8934 2.5624 -3.5027 39 1 7.9031 3.7899 -4.3093 40 1 7.5178 5.1294 -3.2023 41 1 10.0697 3.5105 -3.2125 42 1 9.7454 4.7708 -1.9981 43 1 9.9682 3.0874 -0.1912 44 1 10.2925 1.8270 -1.4056 45 1 12.1314 3.9347 -1.7968 46 1 15.3978 4.1645 -1.1597 47 1 7.9824 3.1320 -0.0813 48 1 7.7129 4.7823 -0.6988 49 1 4.4134 -0.3012 1.0234 50 1 3.7889 -0.7269 -0.5881 51 1 5.2543 0.2720 -0.4370 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698673930.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:38 Heat of formation + Delta-G solvation = -56.930598 kcal Electronic energy + Delta-G solvation = -30747.266242 eV Core-core repulsion = 26645.950766 eV Total energy + Delta-G solvation = -4101.315476 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.27127 -41.01490 -39.24337 -38.74271 -36.98428 -35.11831 -34.89632 -33.46398 -32.42131 -31.77593 -29.24386 -28.83400 -28.49912 -26.84247 -25.91280 -24.49520 -24.05018 -23.44014 -22.22843 -21.49580 -20.40758 -19.24039 -18.96932 -18.60044 -17.67729 -17.43093 -17.12465 -16.91730 -16.71938 -16.28932 -15.85777 -15.51549 -15.33538 -15.22818 -15.08920 -14.85607 -14.80208 -14.35533 -14.28821 -14.14340 -13.95718 -13.89366 -13.70161 -13.42960 -13.01361 -12.96040 -12.85094 -12.76871 -12.58225 -12.39415 -12.30596 -12.14623 -11.97422 -11.90919 -11.76853 -11.61433 -11.35847 -11.19763 -10.93716 -10.64592 -10.45275 -9.73325 -9.53065 -9.02581 -7.98064 -5.27107 -0.40907 0.05195 1.40956 1.44592 1.46653 1.55584 1.77525 2.22421 2.53684 2.54079 3.20731 3.34721 3.38264 3.45238 3.55619 3.63018 3.81354 3.86825 3.94846 4.05419 4.06212 4.13583 4.32033 4.34991 4.40950 4.41370 4.42514 4.48576 4.52909 4.56684 4.60239 4.67222 4.71923 4.78371 4.83688 4.85435 4.91188 4.97010 5.01620 5.04761 5.11330 5.22838 5.28569 5.32080 5.37972 5.44889 5.47416 5.51736 6.12828 6.24344 6.25061 6.70045 6.94882 7.30846 8.06343 8.31265 9.25236 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016929 B = 0.002134 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.523260 B =13116.078234 C =14076.368178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.076 3.924 4 C 0.042 3.958 5 N -0.461 5.461 6 C 0.101 3.899 7 C -0.150 4.150 8 C 0.563 3.437 9 O -0.570 6.570 10 N -0.596 5.596 11 C 0.099 3.901 12 C -0.128 4.128 13 C -0.111 4.111 14 C -0.084 4.084 15 H 0.060 0.940 16 C -0.104 4.104 17 C 0.150 3.850 18 N -0.746 5.746 19 C -0.250 4.250 20 H 0.069 0.931 21 C -0.075 4.075 22 N -0.967 5.967 23 Si 0.974 3.026 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.273 1.273 27 C 0.116 3.884 28 C -0.046 4.046 29 C -0.103 4.103 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.122 0.878 33 H 0.195 0.805 34 H 0.179 0.821 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.015 0.985 44 H 0.008 0.992 45 H 0.376 0.624 46 H 0.253 0.747 47 H 0.066 0.934 48 H 0.084 0.916 49 H 0.075 0.925 50 H 0.089 0.911 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.988 -1.768 -4.708 36.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.028 3.972 4 C -0.116 4.116 5 N -0.170 5.170 6 C -0.057 4.057 7 C -0.155 4.155 8 C 0.350 3.650 9 O -0.450 6.450 10 N -0.327 5.327 11 C -0.022 4.022 12 C -0.166 4.166 13 C -0.148 4.148 14 C -0.104 4.104 15 H 0.079 0.921 16 C -0.142 4.142 17 C 0.023 3.977 18 N -0.389 5.389 19 C -0.382 4.382 20 H 0.087 0.913 21 C -0.267 4.267 22 N -0.617 5.617 23 Si 0.803 3.197 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.198 1.198 27 C -0.006 4.006 28 C -0.055 4.055 29 C -0.160 4.160 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.140 0.860 33 H 0.211 0.789 34 H 0.196 0.804 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.123 0.877 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.033 0.967 44 H 0.026 0.974 45 H 0.208 0.792 46 H 0.062 0.938 47 H 0.084 0.916 48 H 0.102 0.898 49 H 0.094 0.906 50 H 0.108 0.892 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -36.059 -1.642 -4.137 36.333 hybrid contribution 1.728 -0.975 0.630 2.082 sum -34.331 -2.617 -3.508 34.609 Atomic orbital electron populations 1.23519 0.75465 1.06336 1.02975 1.86102 1.24068 1.24921 1.88123 1.19706 0.91545 0.87057 0.98897 1.23554 1.02123 0.86191 0.99722 1.67648 1.11465 1.26575 1.11343 1.23005 0.88421 0.98163 0.96153 1.20588 0.93560 0.94762 1.06571 1.18364 0.87241 0.78109 0.81256 1.90818 1.66314 1.48026 1.39794 1.48144 1.08969 1.49898 1.25734 1.22173 0.95172 0.99885 0.85007 1.21896 0.95662 1.01809 0.97200 1.21576 0.94940 1.00765 0.97522 1.21329 0.93479 1.00402 0.95214 0.92100 1.21587 0.93910 0.99974 0.98725 1.20855 0.83745 0.96154 0.96924 1.42573 1.04142 1.47700 1.44450 1.19608 0.90064 1.15947 1.12573 0.91335 1.25583 0.98771 1.00540 1.01817 1.69806 1.14806 1.35693 1.41409 0.85133 0.78520 0.77425 0.78653 1.21151 1.21640 1.19827 1.21732 0.78853 1.01637 0.98377 1.19834 0.92071 0.95249 0.98358 1.20617 0.97960 0.94169 1.03242 0.91079 0.90662 0.86000 0.78866 0.80368 0.88445 0.89074 0.87680 0.92463 0.90802 0.90264 0.91420 0.91261 0.96714 0.97400 0.79229 0.93838 0.91572 0.89802 0.90630 0.89241 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.82 113.37 1.11 1.16 16 2 O -0.32 -4.50 9.76 -92.64 -0.90 -5.41 16 3 C 0.08 1.28 6.68 22.56 0.15 1.43 16 4 C 0.04 0.58 10.21 84.83 0.87 1.44 16 5 N -0.46 -7.90 10.34 -194.39 -2.01 -9.91 16 6 C 0.10 1.79 8.96 85.03 0.76 2.55 16 7 C -0.15 -3.28 4.61 -20.01 -0.09 -3.37 16 8 C 0.56 15.27 6.18 86.79 0.54 15.81 16 9 O -0.57 -20.73 15.46 -3.86 -0.06 -20.79 16 10 N -0.60 -13.42 2.97 -822.28 -2.44 -15.87 16 11 C 0.10 1.41 5.59 86.36 0.48 1.89 16 12 C -0.13 -1.73 6.08 30.67 0.19 -1.54 16 13 C -0.11 -1.92 5.17 30.62 0.16 -1.76 16 14 C -0.08 -2.11 2.34 -10.72 -0.03 -2.14 16 15 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 16 C -0.10 -3.29 4.80 30.59 0.15 -3.14 16 17 C 0.15 6.43 6.02 86.38 0.52 6.95 16 18 N -0.75 -40.18 5.60 -343.45 -1.92 -42.10 16 19 C -0.25 -14.85 9.99 84.03 0.84 -14.01 16 20 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 21 C -0.07 -4.47 5.50 84.86 0.47 -4.01 16 22 N -0.97 -60.59 13.06 21.65 0.28 -60.31 16 23 Si 0.97 47.99 29.55 68.60 2.03 50.02 16 24 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 25 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 26 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 27 C 0.12 3.07 5.34 86.36 0.46 3.53 16 28 C -0.05 -0.99 5.96 -19.30 -0.12 -1.11 16 29 C -0.10 -2.30 9.10 71.24 0.65 -1.65 16 30 H 0.07 0.17 7.68 -2.39 -0.02 0.15 16 31 H 0.07 0.12 7.67 -2.38 -0.02 0.10 16 32 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 33 H 0.19 1.29 6.30 -2.91 -0.02 1.27 16 34 H 0.18 2.46 7.76 -2.91 -0.02 2.44 16 35 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.09 1.18 5.39 -2.38 -0.01 1.17 16 37 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.01 0.66 6.70 -2.39 -0.02 0.65 16 44 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.38 20.98 7.67 -92.71 -0.71 20.27 16 46 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 47 H 0.07 2.25 5.72 -2.38 -0.01 2.23 16 48 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.09 1.66 7.77 -2.39 -0.02 1.64 16 51 H 0.05 1.41 6.70 -2.38 -0.02 1.40 16 Total: -1.00 -78.19 403.61 2.30 -75.89 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.23 Total: 26.42 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 7.11 Total: 2.05 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -6.10 Total: -128.18 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.96 Total: -26.20 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Total: -78.19 2.30 -75.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698673930.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.961 kcal (2) G-P(sol) polarization free energy of solvation -78.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds