Wall clock time and date at job start Wed Apr 1 2020 04:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38352 * 119.40771 * 2 1 4 4 C 1.38335 * 119.45960 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.82765 * 180.02562 * 4 3 2 6 6 C 1.39992 * 118.34822 * 359.97438 * 4 3 2 7 7 C 1.47521 * 120.59471 * 180.02562 * 6 4 3 8 8 O 1.21592 * 120.00250 * 269.97400 * 7 6 4 9 9 N 1.34783 * 120.00015 * 89.97864 * 7 6 4 10 10 C 1.46495 * 119.99908 * 179.97438 * 9 7 6 11 11 C 1.53009 * 109.46806 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.46767 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.46761 * 185.08461 * 12 11 10 14 14 H 1.09000 * 109.87709 * 55.66019 * 13 12 11 15 15 C 1.54323 * 109.88264 * 294.64292 * 13 12 11 16 16 C 1.55150 * 102.94455 * 218.39296 * 15 13 12 17 17 C 1.54909 * 101.58164 * 35.50213 * 16 15 13 18 18 N 1.47021 * 109.88231 * 176.68041 * 13 12 11 19 19 C 1.36944 * 125.64541 * 298.30838 * 18 13 12 20 20 H 1.08005 * 119.99756 * 346.81739 * 19 18 13 21 21 C 1.38807 * 119.99743 * 166.80911 * 19 18 13 22 22 N 1.31622 * 120.00406 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99875 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47516 * 60.00269 * 23 21 19 25 25 H 1.48497 * 109.47277 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.47232 * 300.00129 * 23 21 19 27 27 C 1.40277 * 118.80618 * 359.97438 * 6 4 3 28 28 O 1.35424 * 119.80185 * 179.97438 * 27 6 4 29 29 N 1.31883 * 119.40620 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46801 * 269.97969 * 1 2 3 31 31 H 1.08997 * 109.47058 * 29.98120 * 1 2 3 32 32 H 1.08997 * 109.46810 * 149.98270 * 1 2 3 33 33 H 1.07997 * 120.27093 * 0.04487 * 3 2 1 34 34 H 1.09002 * 109.46777 * 269.97888 * 5 4 3 35 35 H 1.08994 * 109.47067 * 29.97533 * 5 4 3 36 36 H 1.09002 * 109.47609 * 149.97717 * 5 4 3 37 37 H 0.96999 * 119.99529 * 359.97438 * 9 7 6 38 38 H 1.08998 * 109.47455 * 299.99693 * 10 9 7 39 39 H 1.08996 * 109.47290 * 60.00464 * 10 9 7 40 40 H 1.08994 * 109.46804 * 299.99450 * 11 10 9 41 41 H 1.08991 * 109.47165 * 60.00528 * 11 10 9 42 42 H 1.09006 * 109.46967 * 305.07920 * 12 11 10 43 43 H 1.08994 * 109.47283 * 65.07895 * 12 11 10 44 44 H 1.09003 * 110.71755 * 336.76052 * 15 13 12 45 45 H 1.09001 * 110.71959 * 100.02530 * 15 13 12 46 46 H 1.09006 * 111.00322 * 153.57935 * 16 15 13 47 47 H 1.09002 * 111.00200 * 277.38911 * 16 15 13 48 48 H 1.08995 * 110.36547 * 81.83271 * 17 16 15 49 49 H 1.09003 * 110.36390 * 204.15298 * 17 16 15 50 50 H 0.96999 * 120.00235 * 179.97438 * 22 21 19 51 51 H 0.96696 * 114.00675 * 270.02933 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 -0.0005 5 6 4.3408 2.5013 0.0000 6 6 4.2356 -0.0249 -0.0005 7 6 5.7097 -0.0814 -0.0005 8 8 6.3173 -0.1052 -1.0535 9 7 6.3831 -0.1068 1.1667 10 6 7.8470 -0.1634 1.1667 11 6 8.3566 -0.1829 2.6093 12 6 9.8856 -0.2415 2.6093 13 6 10.3902 -0.3887 4.0461 14 1 9.9348 -1.2630 4.5111 15 6 10.0428 0.8777 4.8568 16 6 11.2968 1.0740 5.7491 17 6 12.4297 0.6101 4.7998 18 7 11.8540 -0.5256 4.0504 19 6 12.5628 -1.5368 3.4584 20 1 12.0533 -2.4269 3.1197 21 6 13.9358 -1.4178 3.2934 22 7 14.5568 -0.3332 3.7065 23 14 14.9025 -2.7968 2.4853 24 1 14.3936 -3.0169 1.1077 25 1 16.3397 -2.4272 2.4293 26 1 14.7430 -4.0431 3.2769 27 6 3.4758 -1.2041 0.0006 28 8 4.0991 -2.4064 0.0001 29 7 2.1546 -1.1489 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6412 2.1375 0.0007 34 1 4.5266 2.8139 -1.0275 35 1 3.7621 3.2685 0.5142 36 1 5.2915 2.3579 0.5137 37 1 5.8985 -0.0875 2.0067 38 1 8.1757 -1.0671 0.6535 39 1 8.2445 0.7115 0.6524 40 1 8.0280 0.7205 3.1229 41 1 7.9592 -1.0581 3.1232 42 1 10.2164 -1.0958 2.0187 43 1 10.2843 0.6759 2.1763 44 1 9.9025 1.7325 4.1953 45 1 9.1560 0.7126 5.4687 46 1 11.4212 2.1217 6.0231 47 1 11.2473 0.4434 6.6367 48 1 12.7068 1.4144 4.1185 49 1 13.2962 0.2832 5.3747 50 1 15.5164 -0.2502 3.5915 51 1 4.2796 -2.7556 -0.8833 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714521887.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:34 Heat of formation + Delta-G solvation = -36.228761 kcal Electronic energy + Delta-G solvation = -30040.539066 eV Core-core repulsion = 25940.121289 eV Total energy + Delta-G solvation = -4100.417777 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.31208 -39.36937 -37.82101 -37.72071 -35.53820 -34.64700 -32.94570 -32.28172 -32.01777 -29.48250 -29.05355 -28.14177 -27.59446 -24.90824 -24.23013 -23.48282 -22.12348 -21.54230 -20.69464 -20.10630 -19.13977 -18.80394 -17.97790 -17.58501 -16.73942 -16.33029 -15.86501 -15.52305 -15.05969 -15.02043 -14.61716 -14.32875 -14.19593 -13.92948 -13.77207 -13.76036 -13.44516 -13.30882 -12.84721 -12.83252 -12.43737 -12.34810 -12.25792 -12.04022 -12.02358 -11.90532 -11.69480 -11.45116 -11.02157 -10.80712 -10.74823 -10.54986 -10.47575 -10.08985 -9.99758 -9.97491 -9.78477 -9.73509 -9.58985 -9.56266 -9.23304 -9.18136 -8.54827 -6.74728 -5.70255 -3.05076 0.35276 0.65841 2.32049 2.86815 2.96612 3.32198 3.42518 3.47146 3.47857 4.02348 4.07178 4.38992 4.52129 4.54551 4.74592 4.84637 4.93270 5.01478 5.09074 5.11766 5.14850 5.18047 5.37810 5.38035 5.46862 5.50603 5.58545 5.61910 5.62844 5.68314 5.74311 5.86388 5.96778 6.00707 6.02996 6.11977 6.27328 6.34646 6.36873 6.44506 6.58924 6.71706 6.74469 6.97706 7.04196 7.19252 7.29090 7.44283 7.58569 7.65302 7.83841 7.97227 8.33072 9.24063 9.85945 10.55234 11.41815 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016978 B = 0.001970 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.820211 B =14207.129234 C =15001.568776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.168 3.832 3 C -0.187 4.187 4 C 0.012 3.988 5 C -0.125 4.125 6 C -0.203 4.203 7 C 0.574 3.426 8 O -0.532 6.532 9 N -0.715 5.715 10 C 0.117 3.883 11 C -0.127 4.127 12 C -0.121 4.121 13 C 0.162 3.838 14 H 0.031 0.969 15 C -0.124 4.124 16 C -0.150 4.150 17 C 0.172 3.828 18 N -0.596 5.596 19 C -0.225 4.225 20 H 0.074 0.926 21 C -0.007 4.007 22 N -0.919 5.919 23 Si 0.909 3.091 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.356 3.644 28 O -0.475 6.475 29 N -0.507 5.507 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.145 0.855 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.401 0.599 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.056 0.944 48 H 0.022 0.978 49 H 0.072 0.928 50 H 0.253 0.747 51 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.988 6.166 -5.122 29.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.031 3.969 3 C -0.207 4.207 4 C 0.004 3.996 5 C -0.181 4.181 6 C -0.210 4.210 7 C 0.357 3.643 8 O -0.408 6.408 9 N -0.365 5.365 10 C -0.006 4.006 11 C -0.166 4.166 12 C -0.161 4.161 13 C 0.054 3.946 14 H 0.048 0.952 15 C -0.162 4.162 16 C -0.189 4.189 17 C 0.047 3.953 18 N -0.321 5.321 19 C -0.353 4.353 20 H 0.092 0.908 21 C -0.203 4.203 22 N -0.566 5.566 23 Si 0.739 3.261 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.212 1.212 27 C 0.177 3.823 28 O -0.283 6.283 29 N -0.227 5.227 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.163 0.837 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.235 0.765 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.040 0.960 49 H 0.090 0.910 50 H 0.063 0.937 51 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -27.681 5.335 -5.328 28.690 hybrid contribution 0.872 -0.149 -0.600 1.069 sum -26.809 5.186 -5.928 27.942 Atomic orbital electron populations 1.20813 0.88059 1.03956 1.03641 1.21203 0.97041 0.87042 0.91659 1.21789 0.93597 0.99681 1.05646 1.20286 0.93705 0.94190 0.91403 1.20954 1.00196 0.93046 1.03935 1.20913 0.95029 0.94145 1.10909 1.17765 0.85904 0.76255 0.84327 1.90838 1.69295 1.49505 1.31205 1.46110 1.08311 1.73963 1.08097 1.21583 0.77591 1.02689 0.98691 1.21844 0.98404 1.02155 0.94175 1.22026 0.91118 1.02483 1.00518 1.20919 0.86676 0.94706 0.92260 0.95174 1.22586 0.97378 0.98095 0.98136 1.23010 0.97650 0.99570 0.98673 1.21481 0.93167 0.89192 0.91481 1.44609 0.99096 1.26384 1.61975 1.18924 0.89736 0.94800 1.31872 0.90826 1.24873 0.96960 0.97453 1.01045 1.69924 1.08545 1.26815 1.51358 0.86250 0.79103 0.81251 0.79471 1.21105 1.21657 1.21187 1.19011 0.86340 0.84484 0.92496 1.84690 1.76605 1.32607 1.34438 1.67069 1.09109 1.30446 1.16045 0.89785 0.90142 0.90061 0.83721 0.89472 0.89997 0.90600 0.76479 0.91114 0.91252 0.91698 0.91635 0.91664 0.92199 0.92080 0.92671 0.92587 0.92495 0.95954 0.91005 0.93721 0.73263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.51 10.16 36.01 0.37 -0.14 16 2 C 0.17 1.37 6.78 -82.53 -0.56 0.81 16 3 C -0.19 -1.32 9.41 -39.50 -0.37 -1.69 16 4 C 0.01 0.11 5.95 -103.93 -0.62 -0.51 16 5 C -0.12 -0.87 9.69 36.01 0.35 -0.53 16 6 C -0.20 -2.24 5.66 -104.69 -0.59 -2.83 16 7 C 0.57 7.40 5.42 -12.47 -0.07 7.33 16 8 O -0.53 -8.78 17.11 5.28 0.09 -8.69 16 9 N -0.71 -8.19 5.55 -61.35 -0.34 -8.53 16 10 C 0.12 1.53 5.67 -4.04 -0.02 1.50 16 11 C -0.13 -1.66 5.08 -26.72 -0.14 -1.79 16 12 C -0.12 -2.13 4.69 -26.73 -0.13 -2.26 16 13 C 0.16 3.22 3.18 -66.95 -0.21 3.01 16 14 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 15 C -0.12 -2.10 5.61 -24.90 -0.14 -2.24 16 16 C -0.15 -2.83 7.08 -24.59 -0.17 -3.00 16 17 C 0.17 4.16 5.46 -2.36 -0.01 4.14 16 18 N -0.60 -14.97 3.14 -162.32 -0.51 -15.48 16 19 C -0.22 -6.20 9.75 -15.06 -0.15 -6.35 16 20 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 21 C -0.01 -0.19 5.47 -17.43 -0.10 -0.29 16 22 N -0.92 -27.04 10.54 55.49 0.59 -26.46 16 23 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.36 4.05 7.77 -16.61 -0.13 3.92 16 28 O -0.48 -5.19 13.01 -17.96 -0.23 -5.43 16 29 N -0.51 -5.50 10.28 -9.21 -0.09 -5.59 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.21 8.07 -51.93 -0.42 -0.21 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.15 0.57 8.06 -52.49 -0.42 0.14 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.38 8.10 -51.93 -0.42 -0.04 16 36 H 0.08 0.61 7.19 -51.93 -0.37 0.24 16 37 H 0.40 3.78 8.46 -40.82 -0.35 3.43 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.76 7.57 -51.93 -0.39 0.36 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.06 1.27 7.90 -51.93 -0.41 0.86 16 43 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 44 H 0.06 0.98 7.79 -51.93 -0.40 0.58 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.02 0.59 8.10 -51.93 -0.42 0.16 16 49 H 0.07 1.95 6.83 -51.93 -0.35 1.59 16 50 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 51 H 0.41 2.89 9.06 45.56 0.41 3.30 16 LS Contribution 416.09 15.07 6.27 6.27 Total: -1.00 -34.76 416.09 -9.69 -44.45 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.74 Total: 3.14 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -2.69 Total: -0.91 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.36 Total: -56.06 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.14 Total: -14.12 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.76 -9.69 -44.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714521887.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.218 kcal (2) G-P(sol) polarization free energy of solvation -34.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds