Wall clock time and date at job start Wed Apr 1 2020 04:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38352 * 119.40771 * 2 1 4 4 C 1.38335 * 119.45960 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.82765 * 180.02562 * 4 3 2 6 6 C 1.39992 * 118.34822 * 359.97438 * 4 3 2 7 7 C 1.47521 * 120.59471 * 180.02562 * 6 4 3 8 8 O 1.21592 * 120.00250 * 269.97400 * 7 6 4 9 9 N 1.34783 * 120.00015 * 89.97864 * 7 6 4 10 10 C 1.46495 * 119.99908 * 179.97438 * 9 7 6 11 11 C 1.53009 * 109.46806 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.46767 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.46761 * 185.08461 * 12 11 10 14 14 H 1.09000 * 109.87709 * 55.66019 * 13 12 11 15 15 C 1.54323 * 109.88264 * 294.64292 * 13 12 11 16 16 C 1.55150 * 102.94455 * 218.39296 * 15 13 12 17 17 C 1.54909 * 101.58164 * 35.50213 * 16 15 13 18 18 N 1.47021 * 109.88231 * 176.68041 * 13 12 11 19 19 C 1.36944 * 125.64541 * 298.30838 * 18 13 12 20 20 H 1.08005 * 119.99756 * 346.81739 * 19 18 13 21 21 C 1.38807 * 119.99743 * 166.80911 * 19 18 13 22 22 N 1.31622 * 120.00406 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99875 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47516 * 60.00269 * 23 21 19 25 25 H 1.48497 * 109.47277 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.47232 * 300.00129 * 23 21 19 27 27 C 1.40277 * 118.80618 * 359.97438 * 6 4 3 28 28 O 1.35424 * 119.80185 * 179.97438 * 27 6 4 29 29 N 1.31883 * 119.40620 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46801 * 269.97969 * 1 2 3 31 31 H 1.08997 * 109.47058 * 29.98120 * 1 2 3 32 32 H 1.08997 * 109.46810 * 149.98270 * 1 2 3 33 33 H 1.07997 * 120.27093 * 0.04487 * 3 2 1 34 34 H 1.09002 * 109.46777 * 269.97888 * 5 4 3 35 35 H 1.08994 * 109.47067 * 29.97533 * 5 4 3 36 36 H 1.09002 * 109.47609 * 149.97717 * 5 4 3 37 37 H 0.96999 * 119.99529 * 359.97438 * 9 7 6 38 38 H 1.08998 * 109.47455 * 299.99693 * 10 9 7 39 39 H 1.08996 * 109.47290 * 60.00464 * 10 9 7 40 40 H 1.08994 * 109.46804 * 299.99450 * 11 10 9 41 41 H 1.08991 * 109.47165 * 60.00528 * 11 10 9 42 42 H 1.09006 * 109.46967 * 305.07920 * 12 11 10 43 43 H 1.08994 * 109.47283 * 65.07895 * 12 11 10 44 44 H 1.09003 * 110.71755 * 336.76052 * 15 13 12 45 45 H 1.09001 * 110.71959 * 100.02530 * 15 13 12 46 46 H 1.09006 * 111.00322 * 153.57935 * 16 15 13 47 47 H 1.09002 * 111.00200 * 277.38911 * 16 15 13 48 48 H 1.08995 * 110.36547 * 81.83271 * 17 16 15 49 49 H 1.09003 * 110.36390 * 204.15298 * 17 16 15 50 50 H 0.96999 * 120.00235 * 179.97438 * 22 21 19 51 51 H 0.96696 * 114.00675 * 270.02933 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 -0.0005 5 6 4.3408 2.5013 0.0000 6 6 4.2356 -0.0249 -0.0005 7 6 5.7097 -0.0814 -0.0005 8 8 6.3173 -0.1052 -1.0535 9 7 6.3831 -0.1068 1.1667 10 6 7.8470 -0.1634 1.1667 11 6 8.3566 -0.1829 2.6093 12 6 9.8856 -0.2415 2.6093 13 6 10.3902 -0.3887 4.0461 14 1 9.9348 -1.2630 4.5111 15 6 10.0428 0.8777 4.8568 16 6 11.2968 1.0740 5.7491 17 6 12.4297 0.6101 4.7998 18 7 11.8540 -0.5256 4.0504 19 6 12.5628 -1.5368 3.4584 20 1 12.0533 -2.4269 3.1197 21 6 13.9358 -1.4178 3.2934 22 7 14.5568 -0.3332 3.7065 23 14 14.9025 -2.7968 2.4853 24 1 14.3936 -3.0169 1.1077 25 1 16.3397 -2.4272 2.4293 26 1 14.7430 -4.0431 3.2769 27 6 3.4758 -1.2041 0.0006 28 8 4.0991 -2.4064 0.0001 29 7 2.1546 -1.1489 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6412 2.1375 0.0007 34 1 4.5266 2.8139 -1.0275 35 1 3.7621 3.2685 0.5142 36 1 5.2915 2.3579 0.5137 37 1 5.8985 -0.0875 2.0067 38 1 8.1757 -1.0671 0.6535 39 1 8.2445 0.7115 0.6524 40 1 8.0280 0.7205 3.1229 41 1 7.9592 -1.0581 3.1232 42 1 10.2164 -1.0958 2.0187 43 1 10.2843 0.6759 2.1763 44 1 9.9025 1.7325 4.1953 45 1 9.1560 0.7126 5.4687 46 1 11.4212 2.1217 6.0231 47 1 11.2473 0.4434 6.6367 48 1 12.7068 1.4144 4.1185 49 1 13.2962 0.2832 5.3747 50 1 15.5164 -0.2502 3.5915 51 1 4.2796 -2.7556 -0.8833 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714521887.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:23 Heat of formation + Delta-G solvation = -62.582307 kcal Electronic energy + Delta-G solvation = -30041.681841 eV Core-core repulsion = 25940.121289 eV Total energy + Delta-G solvation = -4101.560552 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 11.80 seconds Orbital eigenvalues (eV) -42.06142 -40.34180 -39.44194 -38.45625 -36.74223 -35.32537 -34.67488 -33.65099 -32.78170 -31.25494 -30.09869 -29.02532 -28.38630 -26.63696 -25.70440 -24.36770 -22.93589 -22.68032 -21.85883 -21.60063 -20.72528 -19.53787 -18.92737 -18.64630 -18.29553 -17.34814 -16.98731 -16.66505 -16.55694 -16.10991 -15.81778 -15.56169 -15.25356 -15.19912 -14.79476 -14.33368 -14.25573 -14.05362 -13.94787 -13.85372 -13.69563 -13.58647 -13.24388 -13.14355 -13.01897 -12.96536 -12.87552 -12.73464 -12.67092 -12.64137 -12.27660 -12.04467 -11.85991 -11.70542 -11.55928 -11.41318 -11.29925 -11.14407 -10.65767 -10.64612 -10.52524 -10.23312 -9.88854 -8.78243 -7.84568 -5.19920 -0.32674 0.01206 1.33193 1.43758 1.46393 1.52371 2.01098 2.26005 2.49807 2.62586 3.32889 3.38402 3.53424 3.59650 3.69142 3.92540 3.95632 3.99879 4.14932 4.18438 4.25032 4.27540 4.34873 4.41331 4.50035 4.57819 4.61386 4.62891 4.76018 4.81041 4.81596 4.83383 4.95314 4.97445 5.01042 5.03059 5.11161 5.12696 5.18509 5.23141 5.28169 5.34700 5.50247 5.50587 5.51350 5.68905 5.70135 5.80531 6.27884 6.35071 6.37026 6.78225 7.01526 7.12959 7.82757 8.50069 9.26389 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016978 B = 0.001970 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.820211 B =14207.129234 C =15001.568776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.161 3.839 3 C -0.175 4.175 4 C 0.009 3.991 5 C -0.124 4.124 6 C -0.222 4.222 7 C 0.578 3.422 8 O -0.576 6.576 9 N -0.702 5.702 10 C 0.125 3.875 11 C -0.108 4.108 12 C -0.111 4.111 13 C 0.151 3.849 14 H 0.032 0.968 15 C -0.111 4.111 16 C -0.137 4.137 17 C 0.173 3.827 18 N -0.619 5.619 19 C -0.230 4.230 20 H 0.075 0.925 21 C -0.067 4.067 22 N -0.949 5.949 23 Si 0.971 3.029 24 H -0.280 1.280 25 H -0.295 1.295 26 H -0.277 1.277 27 C 0.341 3.659 28 O -0.491 6.491 29 N -0.531 5.531 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.184 0.816 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.061 0.939 37 H 0.414 0.586 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.036 0.964 43 H 0.044 0.956 44 H 0.073 0.927 45 H 0.095 0.905 46 H 0.082 0.918 47 H 0.062 0.938 48 H -0.008 1.008 49 H 0.032 0.968 50 H 0.246 0.754 51 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.673 7.525 -4.338 32.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.024 3.976 3 C -0.194 4.194 4 C 0.001 3.999 5 C -0.180 4.180 6 C -0.229 4.229 7 C 0.364 3.636 8 O -0.456 6.456 9 N -0.352 5.352 10 C 0.001 3.999 11 C -0.146 4.146 12 C -0.151 4.151 13 C 0.045 3.955 14 H 0.050 0.950 15 C -0.148 4.148 16 C -0.176 4.176 17 C 0.048 3.952 18 N -0.344 5.344 19 C -0.360 4.360 20 H 0.093 0.907 21 C -0.260 4.260 22 N -0.598 5.598 23 Si 0.799 3.201 24 H -0.206 1.206 25 H -0.221 1.221 26 H -0.203 1.203 27 C 0.161 3.839 28 O -0.301 6.301 29 N -0.252 5.252 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.093 0.907 33 H 0.202 0.798 34 H 0.104 0.896 35 H 0.131 0.869 36 H 0.080 0.920 37 H 0.250 0.750 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.092 0.908 45 H 0.114 0.886 46 H 0.100 0.900 47 H 0.081 0.919 48 H 0.010 0.990 49 H 0.051 0.949 50 H 0.055 0.945 51 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -31.424 6.684 -4.518 32.443 hybrid contribution 1.917 -0.567 -0.843 2.170 sum -29.507 6.117 -5.361 30.608 Atomic orbital electron populations 1.20942 0.85576 1.05053 1.04689 1.21901 0.98683 0.86773 0.90254 1.22182 0.92850 1.00845 1.03546 1.20588 0.94690 0.93855 0.90779 1.21011 0.99874 0.92991 1.04120 1.20801 0.93536 0.95271 1.13250 1.18060 0.86795 0.75007 0.83762 1.90808 1.70441 1.51589 1.32730 1.45944 1.07559 1.73191 1.08546 1.21349 0.78616 1.01424 0.98512 1.21637 0.94650 1.04019 0.94322 1.21809 0.94422 1.00435 0.98432 1.21213 0.83739 0.96603 0.93978 0.94988 1.22582 0.97779 0.96666 0.97797 1.22881 0.95977 1.01017 0.97703 1.21291 0.94239 0.88158 0.91522 1.44917 1.01535 1.25910 1.62005 1.19248 0.90238 0.95600 1.30873 0.90749 1.25649 0.98095 0.99835 1.02418 1.70138 1.08130 1.28620 1.52934 0.85268 0.77304 0.78852 0.78643 1.20634 1.22082 1.20327 1.19136 0.86808 0.84480 0.93437 1.84637 1.76824 1.32997 1.35666 1.67127 1.08817 1.32099 1.17169 0.88568 0.87329 0.90715 0.79826 0.89560 0.86923 0.91958 0.74953 0.93130 0.92018 0.88966 0.90487 0.94534 0.93684 0.90821 0.88639 0.89983 0.91918 0.99012 0.94947 0.94516 0.72061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.16 71.24 0.72 0.06 16 2 C 0.16 2.24 6.78 42.58 0.29 2.52 16 3 C -0.17 -1.87 9.41 22.32 0.21 -1.66 16 4 C 0.01 0.13 5.95 -19.42 -0.12 0.02 16 5 C -0.12 -1.43 9.69 71.24 0.69 -0.74 16 6 C -0.22 -4.75 5.66 -19.91 -0.11 -4.86 16 7 C 0.58 14.91 5.42 86.69 0.47 15.38 16 8 O -0.58 -19.58 17.11 -4.01 -0.07 -19.65 16 9 N -0.70 -15.47 5.55 -466.27 -2.59 -18.06 16 10 C 0.12 3.19 5.67 86.38 0.49 3.68 16 11 C -0.11 -2.59 5.08 30.60 0.16 -2.44 16 12 C -0.11 -3.86 4.69 30.60 0.14 -3.72 16 13 C 0.15 5.83 3.18 45.34 0.14 5.97 16 14 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 15 C -0.11 -3.37 5.61 31.78 0.18 -3.19 16 16 C -0.14 -4.89 7.08 31.98 0.23 -4.66 16 17 C 0.17 8.58 5.46 86.79 0.47 9.05 16 18 N -0.62 -31.62 3.14 -667.47 -2.09 -33.72 16 19 C -0.23 -13.03 9.75 84.03 0.82 -12.21 16 20 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 21 C -0.07 -3.89 5.47 84.86 0.46 -3.43 16 22 N -0.95 -58.20 10.54 21.65 0.23 -57.97 16 23 Si 0.97 47.05 29.55 68.60 2.03 49.08 16 24 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 25 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 26 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 27 C 0.34 7.66 7.77 85.13 0.66 8.32 16 28 O -0.49 -11.01 13.01 -87.19 -1.13 -12.15 16 29 N -0.53 -11.04 10.28 -296.06 -3.04 -14.08 16 30 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.11 0.09 8.07 -2.39 -0.02 0.07 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.11 0.58 8.10 -2.39 -0.02 0.56 16 36 H 0.06 0.90 7.19 -2.39 -0.02 0.88 16 37 H 0.41 7.01 8.46 -92.71 -0.78 6.22 16 38 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.09 1.78 7.57 -2.39 -0.02 1.76 16 41 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.04 1.46 7.90 -2.38 -0.02 1.44 16 43 H 0.04 1.68 8.07 -2.39 -0.02 1.66 16 44 H 0.07 2.09 7.79 -2.39 -0.02 2.07 16 45 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 47 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 48 H -0.01 -0.44 8.10 -2.39 -0.02 -0.46 16 49 H 0.03 1.83 6.83 -2.39 -0.02 1.81 16 50 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 51 H 0.42 6.41 9.06 -74.06 -0.67 5.74 16 Total: -1.00 -80.44 416.09 -1.27 -81.71 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -0.51 Total: 16.73 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 5.91 Total: 8.11 kcal Atomic # 7 Polarization: -116.33 SS G_CDS: -7.50 Total: -123.83 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -1.20 Total: -31.80 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -80.44 -1.27 -81.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714521887.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.130 kcal (2) G-P(sol) polarization free energy of solvation -80.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.80 seconds