Wall clock time and date at job start Wed Apr 1 2020 05:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.40196 * 120.36673 * 2 1 4 4 C 1.35346 * 119.94872 * 180.02562 * 3 2 1 5 5 N 1.35761 * 120.70252 * 359.97438 * 4 3 2 6 6 C 1.46501 * 119.62485 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47181 * 89.99671 * 6 5 4 8 8 O 1.21276 * 120.00064 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99865 * 179.97438 * 7 6 5 10 10 C 1.46927 * 120.62970 * 0.02562 * 9 7 6 11 11 C 1.53197 * 108.77741 * 126.36542 * 10 9 7 12 12 C 1.53046 * 109.30812 * 54.63324 * 11 10 9 13 13 C 1.53033 * 109.53959 * 298.63355 * 12 11 10 14 14 H 1.08999 * 109.50050 * 301.41903 * 13 12 11 15 15 C 1.53005 * 109.49909 * 181.31983 * 13 12 11 16 16 C 1.52995 * 109.47088 * 175.00086 * 15 13 12 17 17 N 1.46507 * 109.47030 * 179.97438 * 16 15 13 18 18 C 1.36939 * 119.99905 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99842 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99728 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00093 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00040 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47142 * 60.00126 * 22 20 18 24 24 H 1.48505 * 109.47498 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47283 * 300.00041 * 22 20 18 26 26 C 1.46924 * 120.62940 * 179.71802 * 9 7 6 27 27 C 1.34659 * 120.75128 * 359.77363 * 5 4 3 28 28 O 1.22061 * 119.98796 * 180.26114 * 27 5 4 29 29 C 1.36400 * 120.36868 * 180.02562 * 2 1 3 30 30 H 1.08993 * 109.46770 * 269.97757 * 1 2 3 31 31 H 1.09002 * 109.47007 * 29.97834 * 1 2 3 32 32 H 1.09002 * 109.46918 * 149.97599 * 1 2 3 33 33 H 1.08000 * 120.02477 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.64874 * 180.02562 * 4 3 2 35 35 H 1.09002 * 109.47331 * 210.00018 * 6 5 4 36 36 H 1.08999 * 109.46792 * 329.99363 * 6 5 4 37 37 H 1.08998 * 109.58772 * 246.15513 * 10 9 7 38 38 H 1.08999 * 109.58976 * 6.43538 * 10 9 7 39 39 H 1.08998 * 109.49793 * 174.58307 * 11 10 9 40 40 H 1.08998 * 109.49952 * 294.68329 * 11 10 9 41 41 H 1.08997 * 109.46074 * 58.65731 * 12 11 10 42 42 H 1.08999 * 109.45386 * 178.61592 * 12 11 10 43 43 H 1.09001 * 109.46820 * 295.00208 * 15 13 12 44 44 H 1.08998 * 109.46837 * 54.99851 * 15 13 12 45 45 H 1.08996 * 109.47615 * 300.00161 * 16 15 13 46 46 H 1.09008 * 109.47413 * 60.00293 * 16 15 13 47 47 H 0.96993 * 119.99511 * 0.02562 * 17 16 15 48 48 H 0.97004 * 120.00005 * 179.97438 * 21 20 18 49 49 H 1.08992 * 109.58804 * 353.42174 * 26 9 7 50 50 H 1.09001 * 109.58344 * 113.84719 * 26 9 7 51 51 H 1.08002 * 120.34439 * 359.95005 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1997 -0.0005 5 7 4.2539 0.0274 -0.0005 6 6 5.7188 0.0443 -0.0017 7 6 6.2222 0.0508 1.4187 8 8 5.4349 0.0417 2.3412 9 7 7.5474 0.0656 1.6639 10 6 8.5134 0.0762 0.5569 11 6 9.4725 1.2550 0.7506 12 6 10.1090 1.1665 2.1396 13 6 9.0177 1.2510 3.2091 14 1 8.4705 2.1870 3.0974 15 6 9.6580 1.1955 4.5976 16 6 8.5814 1.4049 5.6644 17 7 9.1944 1.3512 6.9940 18 6 8.4202 1.5131 8.1119 19 1 7.3578 1.6800 8.0134 20 6 9.0010 1.4617 9.3715 21 7 10.2958 1.2578 9.4915 22 14 7.9451 1.6833 10.8965 23 1 6.9057 0.6235 10.9371 24 1 8.7987 1.5868 12.1079 25 1 7.2917 3.0163 10.8568 26 6 8.0533 0.0784 3.0433 27 6 3.6018 -1.1508 0.0046 28 8 4.2313 -2.1965 0.0093 29 6 2.1967 -1.1769 -0.0005 30 1 -0.3632 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6822 2.1486 0.0004 34 1 4.1103 2.1344 -0.0001 35 1 6.0920 -0.8417 -0.5154 36 1 6.0714 0.9381 -0.5163 37 1 9.0769 -0.8568 0.5548 38 1 7.9837 0.1852 -0.3894 39 1 10.2524 1.2183 -0.0099 40 1 8.9211 2.1910 0.6621 41 1 10.6396 0.2193 2.2363 42 1 10.8105 1.9905 2.2707 43 1 10.1284 0.2230 4.7422 44 1 10.4106 1.9794 4.6822 45 1 8.1109 2.3774 5.5198 46 1 7.8287 0.6210 5.5798 47 1 10.1485 1.2010 7.0823 48 1 10.7017 1.2223 10.3718 49 1 7.2203 0.1913 3.7370 50 1 8.5785 -0.8545 3.2484 51 1 1.6683 -2.1188 -0.0001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715153210.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:16 Heat of formation + Delta-G solvation = -32.411523 kcal Electronic energy + Delta-G solvation = -30511.543438 eV Core-core repulsion = 26411.291189 eV Total energy + Delta-G solvation = -4100.252249 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.79077 -40.21921 -37.94329 -37.24650 -35.53192 -35.39609 -33.59837 -32.24422 -31.05255 -30.54561 -29.73463 -27.96296 -27.10370 -25.22308 -24.17779 -23.99008 -22.63161 -21.97279 -20.97566 -20.36702 -19.42149 -17.94514 -17.82196 -17.52610 -16.95838 -16.30908 -16.04992 -15.67944 -15.44312 -14.83912 -14.77389 -14.52759 -14.40806 -14.28523 -13.80274 -13.75547 -13.60606 -13.47076 -13.37306 -13.05741 -13.00288 -12.81472 -12.62274 -12.39056 -12.21953 -12.05823 -11.92307 -11.48057 -11.18798 -11.15867 -11.05801 -10.81779 -10.62916 -10.46186 -10.42523 -10.26548 -10.17602 -9.93476 -9.76613 -9.61244 -8.82270 -8.80839 -8.22540 -6.86936 -5.71870 -3.00202 0.55062 1.63955 2.15334 2.32928 2.79149 3.41566 3.48347 3.51925 3.53688 4.08033 4.17193 4.24251 4.39754 4.42117 4.61037 4.64157 4.65706 4.71397 4.73119 4.89912 4.92739 5.00019 5.07142 5.12212 5.20462 5.25016 5.37113 5.47653 5.52332 5.56253 5.59326 5.65116 5.66566 5.74804 5.78255 5.83755 5.96086 6.00251 6.09719 6.17584 6.19995 6.24802 6.31304 6.43066 6.46626 6.79169 6.89737 6.93106 7.13133 7.75123 7.80784 7.90848 8.47560 9.58331 10.16662 10.51466 11.51147 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010099 B = 0.002383 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.929700 B =11745.913086 C =13839.468032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.016 3.984 3 C -0.228 4.228 4 C 0.144 3.856 5 N -0.483 5.483 6 C 0.072 3.928 7 C 0.501 3.499 8 O -0.521 6.521 9 N -0.606 5.606 10 C 0.103 3.897 11 C -0.134 4.134 12 C -0.116 4.116 13 C -0.095 4.095 14 H 0.073 0.927 15 C -0.118 4.118 16 C 0.151 3.849 17 N -0.734 5.734 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.016 4.016 21 N -0.936 5.936 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.114 3.886 27 C 0.523 3.477 28 O -0.552 6.552 29 C -0.248 4.248 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.146 0.854 34 H 0.161 0.839 35 H 0.129 0.871 36 H 0.120 0.880 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.016 0.984 46 H 0.020 0.980 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.100 0.900 50 H 0.070 0.930 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.634 1.591 -30.171 32.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.012 3.988 3 C -0.251 4.251 4 C 0.017 3.983 5 N -0.193 5.193 6 C -0.053 4.053 7 C 0.286 3.714 8 O -0.396 6.396 9 N -0.341 5.341 10 C -0.020 4.020 11 C -0.172 4.172 12 C -0.154 4.154 13 C -0.114 4.114 14 H 0.091 0.909 15 C -0.157 4.157 16 C 0.023 3.977 17 N -0.378 5.378 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.585 5.585 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.007 4.007 27 C 0.325 3.675 28 O -0.435 6.435 29 C -0.269 4.269 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.163 0.837 34 H 0.178 0.822 35 H 0.147 0.853 36 H 0.138 0.862 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.034 0.966 46 H 0.038 0.962 47 H 0.216 0.784 48 H 0.065 0.935 49 H 0.118 0.882 50 H 0.089 0.911 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.772 0.910 -29.558 31.473 hybrid contribution -0.078 0.206 1.010 1.034 sum -10.850 1.116 -28.549 30.561 Atomic orbital electron populations 1.20936 0.90315 1.03421 1.03309 1.20217 0.96822 0.92655 0.89087 1.20530 0.92330 0.98978 1.13278 1.21875 0.93656 0.89423 0.93314 1.45062 1.07091 1.07359 1.59827 1.21841 0.79856 1.06956 0.96661 1.20614 0.82589 0.77096 0.91079 1.90788 1.54646 1.48656 1.45544 1.48103 1.04788 1.73029 1.08141 1.21826 0.91443 0.99701 0.88991 1.21926 0.98739 0.98194 0.98352 1.21603 0.97764 1.02706 0.93333 1.21372 0.95961 0.98635 0.95472 0.90853 1.21731 0.99072 1.02354 0.92527 1.20707 0.93924 0.97659 0.85387 1.42361 1.08274 1.87330 0.99823 1.19210 0.91664 1.41002 0.85026 0.91276 1.24739 0.95911 1.02974 0.97514 1.69656 1.09214 1.56910 1.22678 0.86255 0.79190 0.77965 0.82737 1.21230 1.21678 1.21288 1.21771 0.98829 0.98558 0.81541 1.17088 0.89382 0.82388 0.78620 1.90955 1.69139 1.30277 1.53086 1.21916 0.92207 0.99609 1.13217 0.89957 0.90762 0.90829 0.83659 0.82195 0.85345 0.86206 0.90710 0.90210 0.90532 0.91444 0.91529 0.91270 0.91718 0.91456 0.96585 0.96236 0.78351 0.93527 0.88201 0.91149 0.83534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 10.03 36.01 0.36 -0.30 16 2 C 0.02 0.13 5.89 -104.55 -0.62 -0.48 16 3 C -0.23 -1.64 9.71 -39.88 -0.39 -2.03 16 4 C 0.14 1.10 10.28 -16.84 -0.17 0.93 16 5 N -0.48 -5.08 2.07 -121.06 -0.25 -5.33 16 6 C 0.07 0.63 4.16 -5.19 -0.02 0.61 16 7 C 0.50 6.38 7.76 -10.99 -0.09 6.29 16 8 O -0.52 -9.21 15.84 5.56 0.09 -9.12 16 9 N -0.61 -6.74 2.98 -173.05 -0.52 -7.25 16 10 C 0.10 0.72 6.34 -3.71 -0.02 0.70 16 11 C -0.13 -0.89 6.08 -26.61 -0.16 -1.06 16 12 C -0.12 -1.08 5.17 -26.69 -0.14 -1.22 16 13 C -0.09 -1.17 2.32 -90.74 -0.21 -1.38 16 14 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 15 C -0.12 -1.88 4.80 -26.73 -0.13 -2.01 16 16 C 0.15 3.16 6.02 -4.04 -0.02 3.14 16 17 N -0.73 -19.43 5.60 -59.91 -0.34 -19.77 16 18 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 19 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 20 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 21 N -0.94 -29.06 13.06 55.49 0.72 -28.34 16 22 Si 0.91 23.20 29.55 -169.99 -5.02 18.18 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 C 0.11 1.54 5.30 -3.95 -0.02 1.52 16 27 C 0.52 7.10 7.40 -15.45 -0.11 6.98 16 28 O -0.55 -9.47 16.64 4.86 0.08 -9.39 16 29 C -0.25 -2.75 9.65 -39.38 -0.38 -3.13 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 32 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 33 H 0.15 0.65 8.06 -52.49 -0.42 0.22 16 34 H 0.16 0.68 8.04 -52.49 -0.42 0.25 16 35 H 0.13 1.09 7.19 -51.93 -0.37 0.72 16 36 H 0.12 0.49 7.57 -51.93 -0.39 0.10 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.34 5.93 -51.93 -0.31 0.03 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.02 0.43 6.70 -51.92 -0.35 0.08 16 47 H 0.38 10.51 7.67 -40.82 -0.31 10.19 16 48 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 49 H 0.10 1.67 5.72 -51.93 -0.30 1.37 16 50 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 51 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 410.30 15.07 6.18 6.18 Total: -1.00 -39.41 410.30 -9.76 -49.17 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -8.34 Total: 4.80 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -2.37 Total: 0.88 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -0.38 Total: -60.69 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.17 Total: -18.51 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.02 Total: 18.18 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -39.41 -9.76 -49.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715153210.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.754 kcal (2) G-P(sol) polarization free energy of solvation -39.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds