Wall clock time and date at job start Wed Apr 1 2020 05:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.40196 * 120.36673 * 2 1 4 4 C 1.35346 * 119.94872 * 180.02562 * 3 2 1 5 5 N 1.35761 * 120.70252 * 359.97438 * 4 3 2 6 6 C 1.46501 * 119.62485 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47181 * 89.99671 * 6 5 4 8 8 O 1.21276 * 120.00064 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99865 * 179.97438 * 7 6 5 10 10 C 1.46927 * 120.62970 * 0.02562 * 9 7 6 11 11 C 1.53197 * 108.77741 * 126.36542 * 10 9 7 12 12 C 1.53046 * 109.30812 * 54.63324 * 11 10 9 13 13 C 1.53033 * 109.53959 * 298.63355 * 12 11 10 14 14 H 1.08999 * 109.50050 * 301.41903 * 13 12 11 15 15 C 1.53005 * 109.49909 * 181.31983 * 13 12 11 16 16 C 1.52995 * 109.47088 * 175.00086 * 15 13 12 17 17 N 1.46507 * 109.47030 * 179.97438 * 16 15 13 18 18 C 1.36939 * 119.99905 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99842 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99728 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00093 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00040 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47142 * 60.00126 * 22 20 18 24 24 H 1.48505 * 109.47498 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47283 * 300.00041 * 22 20 18 26 26 C 1.46924 * 120.62940 * 179.71802 * 9 7 6 27 27 C 1.34659 * 120.75128 * 359.77363 * 5 4 3 28 28 O 1.22061 * 119.98796 * 180.26114 * 27 5 4 29 29 C 1.36400 * 120.36868 * 180.02562 * 2 1 3 30 30 H 1.08993 * 109.46770 * 269.97757 * 1 2 3 31 31 H 1.09002 * 109.47007 * 29.97834 * 1 2 3 32 32 H 1.09002 * 109.46918 * 149.97599 * 1 2 3 33 33 H 1.08000 * 120.02477 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.64874 * 180.02562 * 4 3 2 35 35 H 1.09002 * 109.47331 * 210.00018 * 6 5 4 36 36 H 1.08999 * 109.46792 * 329.99363 * 6 5 4 37 37 H 1.08998 * 109.58772 * 246.15513 * 10 9 7 38 38 H 1.08999 * 109.58976 * 6.43538 * 10 9 7 39 39 H 1.08998 * 109.49793 * 174.58307 * 11 10 9 40 40 H 1.08998 * 109.49952 * 294.68329 * 11 10 9 41 41 H 1.08997 * 109.46074 * 58.65731 * 12 11 10 42 42 H 1.08999 * 109.45386 * 178.61592 * 12 11 10 43 43 H 1.09001 * 109.46820 * 295.00208 * 15 13 12 44 44 H 1.08998 * 109.46837 * 54.99851 * 15 13 12 45 45 H 1.08996 * 109.47615 * 300.00161 * 16 15 13 46 46 H 1.09008 * 109.47413 * 60.00293 * 16 15 13 47 47 H 0.96993 * 119.99511 * 0.02562 * 17 16 15 48 48 H 0.97004 * 120.00005 * 179.97438 * 21 20 18 49 49 H 1.08992 * 109.58804 * 353.42174 * 26 9 7 50 50 H 1.09001 * 109.58344 * 113.84719 * 26 9 7 51 51 H 1.08002 * 120.34439 * 359.95005 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1997 -0.0005 5 7 4.2539 0.0274 -0.0005 6 6 5.7188 0.0443 -0.0017 7 6 6.2222 0.0508 1.4187 8 8 5.4349 0.0417 2.3412 9 7 7.5474 0.0656 1.6639 10 6 8.5134 0.0762 0.5569 11 6 9.4725 1.2550 0.7506 12 6 10.1090 1.1665 2.1396 13 6 9.0177 1.2510 3.2091 14 1 8.4705 2.1870 3.0974 15 6 9.6580 1.1955 4.5976 16 6 8.5814 1.4049 5.6644 17 7 9.1944 1.3512 6.9940 18 6 8.4202 1.5131 8.1119 19 1 7.3578 1.6800 8.0134 20 6 9.0010 1.4617 9.3715 21 7 10.2958 1.2578 9.4915 22 14 7.9451 1.6833 10.8965 23 1 6.9057 0.6235 10.9371 24 1 8.7987 1.5868 12.1079 25 1 7.2917 3.0163 10.8568 26 6 8.0533 0.0784 3.0433 27 6 3.6018 -1.1508 0.0046 28 8 4.2313 -2.1965 0.0093 29 6 2.1967 -1.1769 -0.0005 30 1 -0.3632 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6822 2.1486 0.0004 34 1 4.1103 2.1344 -0.0001 35 1 6.0920 -0.8417 -0.5154 36 1 6.0714 0.9381 -0.5163 37 1 9.0769 -0.8568 0.5548 38 1 7.9837 0.1852 -0.3894 39 1 10.2524 1.2183 -0.0099 40 1 8.9211 2.1910 0.6621 41 1 10.6396 0.2193 2.2363 42 1 10.8105 1.9905 2.2707 43 1 10.1284 0.2230 4.7422 44 1 10.4106 1.9794 4.6822 45 1 8.1109 2.3774 5.5198 46 1 7.8287 0.6210 5.5798 47 1 10.1485 1.2010 7.0823 48 1 10.7017 1.2223 10.3718 49 1 7.2203 0.1913 3.7370 50 1 8.5785 -0.8545 3.2484 51 1 1.6683 -2.1188 -0.0001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715153210.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:15 Heat of formation + Delta-G solvation = -59.067791 kcal Electronic energy + Delta-G solvation = -30512.699341 eV Core-core repulsion = 26411.291189 eV Total energy + Delta-G solvation = -4101.408152 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.59072 -41.13391 -38.97923 -38.12411 -37.01119 -36.27028 -35.09030 -33.44464 -32.40314 -31.47547 -30.54393 -29.19527 -28.06974 -26.09423 -25.84437 -24.68050 -24.04184 -22.73422 -22.23015 -21.47773 -20.27241 -19.20227 -18.74828 -18.55587 -18.29399 -17.11842 -16.98321 -16.75233 -16.56511 -16.34979 -15.74392 -15.52566 -15.36451 -15.20865 -15.19320 -14.96022 -14.77151 -14.39002 -14.25174 -14.16314 -14.03732 -13.58271 -13.46221 -13.35016 -13.05669 -12.99919 -12.88099 -12.83295 -12.61683 -12.47800 -12.32221 -12.20354 -11.97215 -11.91144 -11.78283 -11.59306 -11.25581 -11.17131 -11.12107 -10.95742 -10.56770 -9.74614 -9.06154 -9.00876 -8.00561 -5.30229 -0.14575 0.89671 1.39159 1.42139 1.42585 1.46479 1.52804 1.95943 2.51713 2.63710 3.31338 3.32556 3.60207 3.62256 3.70548 3.80009 3.85849 3.87839 3.98778 4.07542 4.09911 4.11265 4.29355 4.31728 4.36975 4.37854 4.48573 4.51740 4.66541 4.69379 4.76981 4.81177 4.83383 4.84784 4.88351 4.89304 5.04529 5.07786 5.13830 5.21759 5.23798 5.30396 5.35403 5.42282 5.45990 5.47597 5.51428 5.63968 6.02536 6.22278 6.26366 6.91845 6.98998 7.27981 8.02994 8.28014 9.22609 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010099 B = 0.002383 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.929700 B =11745.913086 C =13839.468032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.033 3.967 3 C -0.231 4.231 4 C 0.139 3.861 5 N -0.484 5.484 6 C 0.076 3.924 7 C 0.492 3.508 8 O -0.584 6.584 9 N -0.602 5.602 10 C 0.094 3.906 11 C -0.125 4.125 12 C -0.114 4.114 13 C -0.080 4.080 14 H 0.070 0.930 15 C -0.106 4.106 16 C 0.151 3.849 17 N -0.747 5.747 18 C -0.254 4.254 19 H 0.068 0.932 20 C -0.074 4.074 21 N -0.967 5.967 22 Si 0.975 3.025 23 H -0.281 1.281 24 H -0.289 1.289 25 H -0.276 1.276 26 C 0.117 3.883 27 C 0.503 3.497 28 O -0.611 6.611 29 C -0.293 4.293 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.182 0.818 34 H 0.203 0.797 35 H 0.131 0.869 36 H 0.179 0.821 37 H 0.080 0.920 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.013 0.987 46 H 0.008 0.992 47 H 0.375 0.625 48 H 0.254 0.746 49 H 0.058 0.942 50 H 0.065 0.935 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.976 4.107 -32.723 34.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.029 3.971 3 C -0.253 4.253 4 C 0.014 3.986 5 N -0.193 5.193 6 C -0.048 4.048 7 C 0.280 3.720 8 O -0.464 6.464 9 N -0.334 5.334 10 C -0.027 4.027 11 C -0.163 4.163 12 C -0.152 4.152 13 C -0.100 4.100 14 H 0.088 0.912 15 C -0.144 4.144 16 C 0.024 3.976 17 N -0.389 5.389 18 C -0.386 4.386 19 H 0.086 0.914 20 C -0.266 4.266 21 N -0.617 5.617 22 Si 0.803 3.197 23 H -0.207 1.207 24 H -0.214 1.214 25 H -0.202 1.202 26 C -0.006 4.006 27 C 0.308 3.692 28 O -0.500 6.500 29 C -0.315 4.315 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.096 0.904 33 H 0.199 0.801 34 H 0.220 0.780 35 H 0.149 0.851 36 H 0.196 0.804 37 H 0.098 0.902 38 H 0.135 0.865 39 H 0.126 0.874 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.031 0.969 46 H 0.026 0.974 47 H 0.207 0.793 48 H 0.062 0.938 49 H 0.076 0.924 50 H 0.083 0.917 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.111 3.469 -32.177 34.218 hybrid contribution -0.020 -0.507 1.789 1.859 sum -11.131 2.962 -30.389 32.498 Atomic orbital electron populations 1.21043 0.88050 1.04957 1.03932 1.20650 0.98523 0.92149 0.85827 1.21069 0.92543 0.99798 1.11913 1.22687 0.94422 0.89710 0.91827 1.45112 1.08016 1.07432 1.58774 1.22092 0.78983 1.09780 0.93984 1.21397 0.82516 0.75814 0.92239 1.90758 1.56265 1.51636 1.47712 1.48204 1.05268 1.71868 1.08099 1.22233 0.91167 1.00426 0.88833 1.21911 0.99252 0.98105 0.97036 1.21601 0.96651 1.03160 0.93795 1.21228 0.96591 0.97762 0.94435 0.91167 1.21612 0.97554 1.02208 0.93032 1.20841 0.95204 0.96799 0.84714 1.42575 1.07879 1.87265 1.01228 1.19572 0.92002 1.40622 0.86368 0.91381 1.25601 0.97278 1.03182 1.00535 1.69806 1.10765 1.57999 1.23174 0.85192 0.77537 0.78241 0.78683 1.20682 1.21446 1.20158 1.21502 0.97475 0.98861 0.82773 1.17492 0.90289 0.82712 0.78689 1.90893 1.70223 1.32235 1.56603 1.21912 0.91689 1.00783 1.17091 0.89519 0.88197 0.90397 0.80066 0.78039 0.85105 0.80430 0.90161 0.86488 0.87419 0.90723 0.91368 0.90536 0.92033 0.91039 0.96931 0.97436 0.79252 0.93759 0.92358 0.91693 0.84293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 10.03 71.24 0.71 -0.37 16 2 C 0.03 0.51 5.89 -19.82 -0.12 0.39 16 3 C -0.23 -2.67 9.71 22.08 0.21 -2.46 16 4 C 0.14 1.75 10.28 83.42 0.86 2.61 16 5 N -0.48 -9.74 2.07 -655.07 -1.36 -11.10 16 6 C 0.08 1.18 4.16 85.63 0.36 1.53 16 7 C 0.49 12.40 7.76 87.66 0.68 13.08 16 8 O -0.58 -21.63 15.84 -3.02 -0.05 -21.68 16 9 N -0.60 -12.82 2.98 -819.81 -2.44 -15.26 16 10 C 0.09 1.00 6.34 86.36 0.55 1.55 16 11 C -0.13 -1.14 6.08 30.68 0.19 -0.95 16 12 C -0.11 -1.83 5.17 30.62 0.16 -1.67 16 13 C -0.08 -1.95 2.32 -10.87 -0.03 -1.97 16 14 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 15 C -0.11 -3.40 4.80 30.59 0.15 -3.26 16 16 C 0.15 6.57 6.02 86.38 0.52 7.09 16 17 N -0.75 -40.75 5.60 -343.45 -1.92 -42.67 16 18 C -0.25 -15.21 9.99 84.03 0.84 -14.38 16 19 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 20 C -0.07 -4.43 5.50 84.86 0.47 -3.96 16 21 N -0.97 -61.01 13.06 21.65 0.28 -60.73 16 22 Si 0.98 48.14 29.55 68.60 2.03 50.17 16 23 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 25 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 26 C 0.12 3.24 5.30 86.21 0.46 3.70 16 27 C 0.50 14.37 7.40 84.82 0.63 15.00 16 28 O -0.61 -22.69 16.64 -5.51 -0.09 -22.78 16 29 C -0.29 -6.90 9.65 22.40 0.22 -6.68 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.10 0.39 8.10 -2.39 -0.02 0.37 16 32 H 0.08 0.64 8.09 -2.39 -0.02 0.62 16 33 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 34 H 0.20 0.73 8.04 -2.91 -0.02 0.70 16 35 H 0.13 2.03 7.19 -2.39 -0.02 2.01 16 36 H 0.18 0.56 7.57 -2.39 -0.02 0.54 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.12 0.41 5.93 -2.39 -0.01 0.39 16 39 H 0.11 0.44 8.14 -2.39 -0.02 0.43 16 40 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.01 0.36 6.70 -2.38 -0.02 0.34 16 47 H 0.38 21.25 7.67 -92.71 -0.71 20.53 16 48 H 0.25 15.40 8.31 -92.70 -0.77 14.63 16 49 H 0.06 2.11 5.72 -2.39 -0.01 2.10 16 50 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -93.52 410.30 3.51 -90.01 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.21 Total: 24.78 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 6.85 Total: 9.26 kcal Atomic # 7 Polarization: -124.32 SS G_CDS: -5.44 Total: -129.76 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -0.14 Total: -44.46 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Total: -93.52 3.51 -90.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715153210.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.942 kcal (2) G-P(sol) polarization free energy of solvation -93.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds