Wall clock time and date at job start Wed Apr 1 2020 04:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38358 * 119.41165 * 2 1 4 4 C 1.38340 * 119.45675 * 180.25035 * 3 2 1 5 5 C 1.50699 * 120.82098 * 179.75126 * 4 3 2 6 6 C 1.39984 * 118.34927 * 359.47993 * 4 3 2 7 7 C 1.47528 * 120.59157 * 180.22956 * 6 4 3 8 8 O 1.21586 * 119.99849 * 90.00124 * 7 6 4 9 9 N 1.34776 * 119.99806 * 269.99179 * 7 6 4 10 10 C 1.46507 * 119.99783 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.46808 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46685 * 179.97438 * 11 10 9 13 13 C 1.53039 * 109.45978 * 295.02180 * 12 11 10 14 14 C 1.53196 * 109.30983 * 178.60199 * 13 12 11 15 15 N 1.46921 * 108.76809 * 54.65996 * 14 13 12 16 16 C 1.36928 * 120.63616 * 126.40135 * 15 14 13 17 17 H 1.08007 * 120.00022 * 331.82847 * 16 15 14 18 18 C 1.38813 * 120.00425 * 151.82313 * 16 15 14 19 19 N 1.31622 * 119.99754 * 343.08546 * 18 16 15 20 20 Si 1.86804 * 120.00082 * 163.08379 * 18 16 15 21 21 H 1.48490 * 109.47383 * 60.00197 * 20 18 16 22 22 H 1.48495 * 109.46954 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46818 * 299.99736 * 20 18 16 24 24 C 1.46937 * 118.73747 * 306.38490 * 15 14 13 25 25 C 1.53041 * 109.45670 * 174.97171 * 12 11 10 26 26 C 1.40274 * 118.80789 * 0.25049 * 6 4 3 27 27 O 1.35427 * 119.79859 * 180.02562 * 26 6 4 28 28 N 1.31886 * 119.40650 * 179.71470 * 2 1 3 29 29 H 1.09000 * 109.47512 * 270.28492 * 1 2 3 30 30 H 1.09002 * 109.46805 * 30.28040 * 1 2 3 31 31 H 1.08999 * 109.47280 * 150.27721 * 1 2 3 32 32 H 1.07998 * 120.26831 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.46992 * 269.71760 * 5 4 3 34 34 H 1.09001 * 109.47056 * 149.71981 * 5 4 3 35 35 H 1.09003 * 109.47286 * 29.71748 * 5 4 3 36 36 H 0.97000 * 120.00157 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.47061 * 300.00282 * 10 9 7 38 38 H 1.08996 * 109.47083 * 60.00217 * 10 9 7 39 39 H 1.09001 * 109.47042 * 299.99684 * 11 10 9 40 40 H 1.08996 * 109.47619 * 59.99935 * 11 10 9 41 41 H 1.08992 * 109.46228 * 55.00170 * 12 11 10 42 42 H 1.08996 * 109.50304 * 298.56880 * 13 12 11 43 43 H 1.08997 * 109.49452 * 58.67162 * 13 12 11 44 44 H 1.08998 * 109.59834 * 294.86856 * 14 13 12 45 45 H 1.08999 * 109.70274 * 174.50986 * 14 13 12 46 46 H 0.97002 * 119.99656 * 179.97438 * 19 18 16 47 47 H 1.08999 * 109.58123 * 293.81940 * 24 15 14 48 48 H 1.08994 * 109.70176 * 173.46507 * 24 15 14 49 49 H 1.09000 * 109.50020 * 301.33598 * 25 12 11 50 50 H 1.08997 * 109.49927 * 61.43446 * 25 12 11 51 51 H 0.96703 * 114.00283 * 90.00015 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2064 -0.0053 5 6 4.3409 2.5011 -0.0110 6 6 4.2355 -0.0251 0.0007 7 6 5.7097 -0.0816 0.0006 8 8 6.3175 -0.0996 1.0535 9 7 6.3827 -0.1134 -1.1666 10 6 7.8467 -0.1701 -1.1667 11 6 8.3559 -0.1963 -2.6093 12 6 9.8848 -0.2549 -2.6094 13 6 10.4445 1.0350 -2.0052 14 6 11.9742 0.9581 -1.9748 15 7 12.4598 0.6669 -3.3305 16 6 13.3996 1.4680 -3.9221 17 1 13.4676 2.5113 -3.6512 18 6 14.2650 0.9393 -4.8700 19 7 14.4195 -0.3643 -4.9655 20 14 15.2102 2.0779 -6.0101 21 1 16.0694 2.9828 -5.2051 22 1 16.0590 1.2711 -6.9231 23 1 14.2529 2.8848 -6.8087 24 6 11.9181 -0.5006 -4.0394 25 6 10.3890 -0.4075 -4.0462 26 6 3.4757 -1.2042 0.0064 27 8 4.0991 -2.4064 0.0128 28 7 2.1545 -1.1489 0.0057 29 1 -0.3634 0.0051 1.0276 30 1 -0.3633 0.8875 -0.5182 31 1 -0.3634 -0.8924 -0.5095 32 1 1.6412 2.1375 -0.0004 33 1 4.5272 2.8084 -1.0401 34 1 5.2913 2.3603 0.5038 35 1 3.7619 3.2711 0.4989 36 1 5.8979 -0.0988 -2.0066 37 1 8.2444 0.7076 -0.6573 38 1 8.1755 -1.0709 -0.6486 39 1 7.9583 -1.0739 -3.1190 40 1 8.0272 0.7046 -3.1271 41 1 10.2156 -1.1073 -2.0161 42 1 10.1347 1.8855 -2.6123 43 1 10.0663 1.1551 -0.9900 44 1 12.2870 0.1645 -1.2963 45 1 12.3834 1.9101 -1.6368 46 1 15.0240 -0.7338 -5.6281 47 1 12.2264 -1.4132 -3.5292 48 1 12.2881 -0.5123 -5.0646 49 1 9.9713 -1.3141 -4.4841 50 1 10.0798 0.4567 -4.6340 51 1 4.2798 -2.7512 0.8981 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715203127.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:04 Heat of formation + Delta-G solvation = -41.487572 kcal Electronic energy + Delta-G solvation = -30147.062371 eV Core-core repulsion = 26046.416555 eV Total energy + Delta-G solvation = -4100.645816 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.34436 -39.45111 -37.98150 -37.75513 -35.44396 -34.66122 -33.53044 -32.24425 -31.26846 -30.01606 -29.21927 -28.28947 -27.83924 -25.20367 -23.85997 -23.08269 -22.26063 -21.82030 -20.95196 -20.49724 -19.07050 -18.83716 -17.99827 -17.60952 -16.80113 -16.33814 -15.90113 -15.36726 -15.09891 -14.80872 -14.63235 -14.17148 -14.11304 -13.78311 -13.73873 -13.48157 -13.47324 -13.42949 -13.23227 -12.87392 -12.81521 -12.53471 -12.44841 -12.31075 -12.20830 -12.05622 -11.58108 -11.33278 -11.20376 -10.88676 -10.68903 -10.61117 -10.41304 -10.17685 -10.14256 -10.02650 -9.85795 -9.76406 -9.45047 -9.38470 -9.26098 -9.16921 -8.43459 -6.62334 -5.75687 -3.17898 0.32498 0.63422 2.27660 2.83888 2.92384 3.28549 3.39548 3.45170 3.46348 3.99595 4.05248 4.35397 4.51986 4.52384 4.72394 4.81812 4.90909 4.95007 5.04995 5.06654 5.10217 5.13013 5.29799 5.36191 5.40468 5.47226 5.48645 5.57533 5.61613 5.66793 5.75525 5.79477 5.98543 6.02496 6.04091 6.12693 6.22728 6.31388 6.40242 6.57558 6.66756 6.73811 6.85863 6.89284 7.00460 7.04792 7.23871 7.41393 7.41737 7.69903 7.81952 7.92404 8.48880 9.25127 9.88962 10.46300 11.32710 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025192 B = 0.001786 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.187376 B =15672.808315 C =15949.789982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.169 3.831 3 C -0.187 4.187 4 C 0.013 3.987 5 C -0.127 4.127 6 C -0.204 4.204 7 C 0.575 3.425 8 O -0.532 6.532 9 N -0.714 5.714 10 C 0.116 3.884 11 C -0.125 4.125 12 C -0.074 4.074 13 C -0.130 4.130 14 C 0.144 3.856 15 N -0.592 5.592 16 C -0.251 4.251 17 H 0.064 0.936 18 C 0.001 3.999 19 N -0.904 5.904 20 Si 0.902 3.098 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.171 3.829 25 C -0.134 4.134 26 C 0.356 3.644 27 O -0.476 6.476 28 N -0.507 5.507 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.145 0.855 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.401 0.599 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.050 0.950 44 H 0.016 0.984 45 H 0.051 0.949 46 H 0.254 0.746 47 H 0.016 0.984 48 H 0.086 0.914 49 H 0.047 0.953 50 H 0.053 0.947 51 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.646 1.981 9.555 30.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.031 3.969 3 C -0.207 4.207 4 C 0.005 3.995 5 C -0.183 4.183 6 C -0.211 4.211 7 C 0.359 3.641 8 O -0.409 6.409 9 N -0.364 5.364 10 C -0.006 4.006 11 C -0.163 4.163 12 C -0.094 4.094 13 C -0.169 4.169 14 C 0.018 3.982 15 N -0.315 5.315 16 C -0.381 4.381 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.211 1.211 24 C 0.045 3.955 25 C -0.173 4.173 26 C 0.176 3.824 27 O -0.284 6.284 28 N -0.227 5.227 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.163 0.837 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.235 0.765 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.034 0.966 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.034 0.966 48 H 0.104 0.896 49 H 0.066 0.934 50 H 0.072 0.928 51 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -28.467 1.113 9.605 30.064 hybrid contribution 0.807 1.024 -0.562 1.420 sum -27.659 2.137 9.043 29.178 Atomic orbital electron populations 1.20815 0.88044 1.04039 1.03599 1.21207 0.97047 0.87032 0.91615 1.21804 0.93616 0.99696 1.05588 1.20292 0.93702 0.94206 0.91321 1.20973 1.00561 0.93029 1.03763 1.20906 0.95011 0.94133 1.11008 1.17754 0.85914 0.76174 0.84284 1.90836 1.69288 1.49625 1.31178 1.46090 1.08271 1.73930 1.08144 1.21616 0.77677 1.02804 0.98546 1.21914 0.97740 1.02257 0.94410 1.20970 0.91478 0.98606 0.98300 1.22120 0.98916 0.96970 0.98862 1.20897 0.91043 0.98273 0.87986 1.44042 1.45616 1.30805 1.11064 1.19145 1.08836 0.90912 1.19208 0.91850 1.25044 0.97370 0.95593 1.01735 1.70028 1.38759 1.09980 1.36048 0.86377 0.79508 0.80034 0.80896 1.20915 1.21663 1.21107 1.20759 0.87070 0.88534 0.99154 1.22221 1.00707 0.99968 0.94450 1.19003 0.86351 0.84429 0.92574 1.84690 1.76617 1.32696 1.34373 1.67066 1.09100 1.30448 1.16072 0.89810 0.90105 0.90025 0.83703 0.89521 0.90324 0.89985 0.76495 0.90769 0.91242 0.91659 0.91562 0.91644 0.92443 0.93119 0.96596 0.93000 0.93640 0.96555 0.89610 0.93436 0.92777 0.73286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 10.16 36.00 0.37 -0.12 16 2 C 0.17 1.33 6.78 -82.53 -0.56 0.77 16 3 C -0.19 -1.28 9.41 -39.50 -0.37 -1.65 16 4 C 0.01 0.11 5.95 -103.93 -0.62 -0.51 16 5 C -0.13 -0.87 9.69 36.01 0.35 -0.52 16 6 C -0.20 -2.16 5.66 -104.69 -0.59 -2.76 16 7 C 0.57 7.07 5.42 -12.47 -0.07 7.00 16 8 O -0.53 -8.40 17.11 5.29 0.09 -8.31 16 9 N -0.71 -7.75 5.55 -61.35 -0.34 -8.09 16 10 C 0.12 1.40 5.43 -4.04 -0.02 1.38 16 11 C -0.13 -1.53 4.80 -26.73 -0.13 -1.66 16 12 C -0.07 -1.18 2.15 -90.58 -0.19 -1.37 16 13 C -0.13 -2.19 5.14 -26.61 -0.14 -2.33 16 14 C 0.14 3.05 6.52 -3.71 -0.02 3.02 16 15 N -0.59 -14.91 2.99 -172.31 -0.52 -15.43 16 16 C -0.25 -6.95 9.58 -15.06 -0.14 -7.09 16 17 H 0.06 1.72 7.89 -52.48 -0.41 1.31 16 18 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 19 N -0.90 -26.41 11.19 55.49 0.62 -25.79 16 20 Si 0.90 21.79 29.59 -169.99 -5.03 16.76 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.17 4.06 5.30 -3.70 -0.02 4.04 16 25 C -0.13 -2.48 5.36 -26.61 -0.14 -2.63 16 26 C 0.36 3.89 7.77 -16.61 -0.13 3.76 16 27 O -0.48 -4.92 13.01 -17.97 -0.23 -5.15 16 28 N -0.51 -5.33 10.28 -9.21 -0.09 -5.43 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.20 8.07 -51.93 -0.42 -0.22 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.69 7.19 -51.93 -0.37 0.32 16 35 H 0.08 0.40 8.10 -51.93 -0.42 -0.03 16 36 H 0.40 3.60 8.46 -40.82 -0.35 3.25 16 37 H 0.07 0.96 6.53 -51.93 -0.34 0.62 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.75 6.50 -51.93 -0.34 0.42 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 46 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.09 2.29 6.06 -51.93 -0.31 1.98 16 49 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 51 H 0.41 2.63 9.06 45.56 0.41 3.04 16 LS Contribution 410.95 15.07 6.19 6.19 Total: -1.00 -34.39 410.95 -9.43 -43.82 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -7.59 Total: 2.14 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -2.52 Total: -0.71 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.33 Total: -54.74 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.14 Total: -13.46 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.39 -9.43 -43.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715203127.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.330 kcal (2) G-P(sol) polarization free energy of solvation -34.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds