Wall clock time and date at job start Wed Apr 1 2020 04:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38358 * 119.41165 * 2 1 4 4 C 1.38340 * 119.45675 * 180.25035 * 3 2 1 5 5 C 1.50699 * 120.82098 * 179.75126 * 4 3 2 6 6 C 1.39984 * 118.34927 * 359.47993 * 4 3 2 7 7 C 1.47528 * 120.59157 * 180.22956 * 6 4 3 8 8 O 1.21586 * 119.99849 * 90.00124 * 7 6 4 9 9 N 1.34776 * 119.99806 * 269.99179 * 7 6 4 10 10 C 1.46507 * 119.99783 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.46808 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46685 * 179.97438 * 11 10 9 13 13 C 1.53039 * 109.45978 * 295.02180 * 12 11 10 14 14 C 1.53196 * 109.30983 * 178.60199 * 13 12 11 15 15 N 1.46921 * 108.76809 * 54.65996 * 14 13 12 16 16 C 1.36928 * 120.63616 * 126.40135 * 15 14 13 17 17 H 1.08007 * 120.00022 * 331.82847 * 16 15 14 18 18 C 1.38813 * 120.00425 * 151.82313 * 16 15 14 19 19 N 1.31622 * 119.99754 * 343.08546 * 18 16 15 20 20 Si 1.86804 * 120.00082 * 163.08379 * 18 16 15 21 21 H 1.48490 * 109.47383 * 60.00197 * 20 18 16 22 22 H 1.48495 * 109.46954 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46818 * 299.99736 * 20 18 16 24 24 C 1.46937 * 118.73747 * 306.38490 * 15 14 13 25 25 C 1.53041 * 109.45670 * 174.97171 * 12 11 10 26 26 C 1.40274 * 118.80789 * 0.25049 * 6 4 3 27 27 O 1.35427 * 119.79859 * 180.02562 * 26 6 4 28 28 N 1.31886 * 119.40650 * 179.71470 * 2 1 3 29 29 H 1.09000 * 109.47512 * 270.28492 * 1 2 3 30 30 H 1.09002 * 109.46805 * 30.28040 * 1 2 3 31 31 H 1.08999 * 109.47280 * 150.27721 * 1 2 3 32 32 H 1.07998 * 120.26831 * 359.97438 * 3 2 1 33 33 H 1.09003 * 109.46992 * 269.71760 * 5 4 3 34 34 H 1.09001 * 109.47056 * 149.71981 * 5 4 3 35 35 H 1.09003 * 109.47286 * 29.71748 * 5 4 3 36 36 H 0.97000 * 120.00157 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.47061 * 300.00282 * 10 9 7 38 38 H 1.08996 * 109.47083 * 60.00217 * 10 9 7 39 39 H 1.09001 * 109.47042 * 299.99684 * 11 10 9 40 40 H 1.08996 * 109.47619 * 59.99935 * 11 10 9 41 41 H 1.08992 * 109.46228 * 55.00170 * 12 11 10 42 42 H 1.08996 * 109.50304 * 298.56880 * 13 12 11 43 43 H 1.08997 * 109.49452 * 58.67162 * 13 12 11 44 44 H 1.08998 * 109.59834 * 294.86856 * 14 13 12 45 45 H 1.08999 * 109.70274 * 174.50986 * 14 13 12 46 46 H 0.97002 * 119.99656 * 179.97438 * 19 18 16 47 47 H 1.08999 * 109.58123 * 293.81940 * 24 15 14 48 48 H 1.08994 * 109.70176 * 173.46507 * 24 15 14 49 49 H 1.09000 * 109.50020 * 301.33598 * 25 12 11 50 50 H 1.08997 * 109.49927 * 61.43446 * 25 12 11 51 51 H 0.96703 * 114.00283 * 90.00015 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2064 -0.0053 5 6 4.3409 2.5011 -0.0110 6 6 4.2355 -0.0251 0.0007 7 6 5.7097 -0.0816 0.0006 8 8 6.3175 -0.0996 1.0535 9 7 6.3827 -0.1134 -1.1666 10 6 7.8467 -0.1701 -1.1667 11 6 8.3559 -0.1963 -2.6093 12 6 9.8848 -0.2549 -2.6094 13 6 10.4445 1.0350 -2.0052 14 6 11.9742 0.9581 -1.9748 15 7 12.4598 0.6669 -3.3305 16 6 13.3996 1.4680 -3.9221 17 1 13.4676 2.5113 -3.6512 18 6 14.2650 0.9393 -4.8700 19 7 14.4195 -0.3643 -4.9655 20 14 15.2102 2.0779 -6.0101 21 1 16.0694 2.9828 -5.2051 22 1 16.0590 1.2711 -6.9231 23 1 14.2529 2.8848 -6.8087 24 6 11.9181 -0.5006 -4.0394 25 6 10.3890 -0.4075 -4.0462 26 6 3.4757 -1.2042 0.0064 27 8 4.0991 -2.4064 0.0128 28 7 2.1545 -1.1489 0.0057 29 1 -0.3634 0.0051 1.0276 30 1 -0.3633 0.8875 -0.5182 31 1 -0.3634 -0.8924 -0.5095 32 1 1.6412 2.1375 -0.0004 33 1 4.5272 2.8084 -1.0401 34 1 5.2913 2.3603 0.5038 35 1 3.7619 3.2711 0.4989 36 1 5.8979 -0.0988 -2.0066 37 1 8.2444 0.7076 -0.6573 38 1 8.1755 -1.0709 -0.6486 39 1 7.9583 -1.0739 -3.1190 40 1 8.0272 0.7046 -3.1271 41 1 10.2156 -1.1073 -2.0161 42 1 10.1347 1.8855 -2.6123 43 1 10.0663 1.1551 -0.9900 44 1 12.2870 0.1645 -1.2963 45 1 12.3834 1.9101 -1.6368 46 1 15.0240 -0.7338 -5.6281 47 1 12.2264 -1.4132 -3.5292 48 1 12.2881 -0.5123 -5.0646 49 1 9.9713 -1.3141 -4.4841 50 1 10.0798 0.4567 -4.6340 51 1 4.2798 -2.7512 0.8981 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715203127.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:03 Heat of formation + Delta-G solvation = -67.277833 kcal Electronic energy + Delta-G solvation = -30148.180720 eV Core-core repulsion = 26046.416555 eV Total energy + Delta-G solvation = -4101.764166 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.05276 -40.37934 -39.47388 -38.44563 -36.74745 -35.34033 -35.01952 -33.10503 -32.75541 -31.60756 -30.37464 -29.21563 -28.44776 -26.82474 -24.92658 -24.27088 -23.60648 -22.75691 -22.19550 -21.52944 -20.62849 -19.52788 -18.84741 -18.69945 -18.28269 -17.32213 -16.83493 -16.66173 -16.35396 -15.88821 -15.59753 -15.29632 -15.25650 -15.13647 -14.86175 -14.77145 -14.36373 -14.22195 -14.13694 -13.95967 -13.86801 -13.81968 -13.25264 -13.03950 -12.99246 -12.92747 -12.88360 -12.81269 -12.64065 -12.52939 -12.31121 -12.16799 -11.95114 -11.80753 -11.61301 -11.40328 -11.03014 -10.99490 -10.64945 -10.52578 -10.49704 -10.17708 -9.88403 -8.66101 -7.86484 -5.32184 -0.31961 0.01780 1.35521 1.46313 1.48573 1.55583 2.03475 2.26892 2.51632 2.62743 3.27380 3.38826 3.53684 3.60936 3.73336 3.81421 3.91565 3.97311 4.11925 4.18295 4.26576 4.30035 4.41716 4.50526 4.57588 4.58864 4.63739 4.65507 4.74747 4.76925 4.81012 4.89196 4.95119 5.00705 5.01895 5.03372 5.10289 5.11585 5.18595 5.26536 5.32530 5.36630 5.40695 5.46512 5.50306 5.56728 5.67359 5.81027 6.36506 6.38204 6.40134 6.78679 7.03179 7.16073 7.88315 8.40128 9.19399 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025192 B = 0.001786 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.187376 B =15672.808315 C =15949.789982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.161 3.839 3 C -0.177 4.177 4 C 0.009 3.991 5 C -0.124 4.124 6 C -0.222 4.222 7 C 0.580 3.420 8 O -0.574 6.574 9 N -0.703 5.703 10 C 0.123 3.877 11 C -0.108 4.108 12 C -0.070 4.070 13 C -0.116 4.116 14 C 0.137 3.863 15 N -0.611 5.611 16 C -0.263 4.263 17 H 0.065 0.935 18 C -0.053 4.053 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.277 1.277 24 C 0.174 3.826 25 C -0.121 4.121 26 C 0.341 3.659 27 O -0.490 6.490 28 N -0.532 5.532 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.183 0.817 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.106 0.894 36 H 0.412 0.588 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.076 0.924 44 H 0.008 0.992 45 H 0.050 0.950 46 H 0.249 0.751 47 H -0.009 1.009 48 H 0.051 0.949 49 H 0.068 0.932 50 H 0.053 0.947 51 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.659 3.961 9.376 33.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.024 3.976 3 C -0.196 4.196 4 C 0.001 3.999 5 C -0.181 4.181 6 C -0.229 4.229 7 C 0.365 3.635 8 O -0.454 6.454 9 N -0.354 5.354 10 C 0.000 4.000 11 C -0.146 4.146 12 C -0.089 4.089 13 C -0.155 4.155 14 C 0.012 3.988 15 N -0.335 5.335 16 C -0.394 4.394 17 H 0.083 0.917 18 C -0.248 4.248 19 N -0.583 5.583 20 Si 0.796 3.204 21 H -0.202 1.202 22 H -0.220 1.220 23 H -0.203 1.203 24 C 0.049 3.951 25 C -0.160 4.160 26 C 0.162 3.838 27 O -0.300 6.300 28 N -0.253 5.253 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.093 0.907 32 H 0.200 0.800 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.124 0.876 36 H 0.248 0.752 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.026 0.974 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.009 0.991 48 H 0.069 0.931 49 H 0.086 0.914 50 H 0.072 0.928 51 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -31.515 3.102 9.425 33.041 hybrid contribution 1.710 0.404 -0.440 1.811 sum -29.806 3.506 8.986 31.327 Atomic orbital electron populations 1.20937 0.85649 1.05048 1.04648 1.21880 0.98648 0.86782 0.90304 1.22179 0.92934 1.00814 1.03668 1.20586 0.94647 0.93939 0.90756 1.21012 0.99588 0.92870 1.04580 1.20820 0.93769 0.95149 1.13170 1.17996 0.86673 0.75040 0.83791 1.90806 1.70336 1.51631 1.32616 1.45959 1.07777 1.73150 1.08467 1.21436 0.78407 1.02019 0.98171 1.21701 0.94534 1.03683 0.94697 1.20873 0.94119 0.97775 0.96110 1.21969 0.95406 0.97567 1.00581 1.21081 0.94067 0.97730 0.85923 1.44328 1.45664 1.30741 1.12734 1.19492 1.09118 0.91395 1.19370 0.91738 1.25827 0.98710 0.96951 1.03333 1.70194 1.39697 1.11688 1.36676 0.85333 0.78185 0.78109 0.78782 1.20163 1.22035 1.20286 1.20606 0.90677 0.87257 0.96599 1.22018 0.96455 1.00966 0.96543 1.19128 0.86769 0.84493 0.93407 1.84637 1.76789 1.32987 1.35629 1.67120 1.08914 1.32045 1.17208 0.88597 0.87369 0.90729 0.79984 0.88206 0.92660 0.87554 0.75154 0.91353 0.92384 0.90232 0.90149 0.92318 0.92306 0.90590 0.97429 0.93189 0.94156 0.99103 0.93074 0.91389 0.92798 0.72016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.16 71.24 0.72 0.07 16 2 C 0.16 2.18 6.78 42.58 0.29 2.47 16 3 C -0.18 -1.86 9.41 22.32 0.21 -1.65 16 4 C 0.01 0.13 5.95 -19.42 -0.12 0.01 16 5 C -0.12 -1.39 9.69 71.24 0.69 -0.70 16 6 C -0.22 -4.54 5.66 -19.91 -0.11 -4.65 16 7 C 0.58 13.98 5.42 86.69 0.47 14.45 16 8 O -0.57 -18.28 17.11 -3.99 -0.07 -18.34 16 9 N -0.70 -14.27 5.55 -466.27 -2.59 -16.86 16 10 C 0.12 2.77 5.43 86.38 0.47 3.24 16 11 C -0.11 -2.36 4.80 30.59 0.15 -2.22 16 12 C -0.07 -2.10 2.15 -10.77 -0.02 -2.12 16 13 C -0.12 -3.77 5.14 30.67 0.16 -3.61 16 14 C 0.14 5.82 6.52 86.36 0.56 6.38 16 15 N -0.61 -31.31 2.99 -699.08 -2.09 -33.41 16 16 C -0.26 -14.78 9.58 84.04 0.81 -13.98 16 17 H 0.06 3.52 7.89 -2.91 -0.02 3.50 16 18 C -0.05 -3.01 4.92 84.86 0.42 -2.60 16 19 N -0.94 -56.46 11.19 21.65 0.24 -56.21 16 20 Si 0.97 45.37 29.59 68.60 2.03 47.40 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 C 0.17 8.52 5.30 86.36 0.46 8.98 16 25 C -0.12 -4.36 5.36 30.67 0.16 -4.20 16 26 C 0.34 7.34 7.77 85.13 0.66 8.00 16 27 O -0.49 -10.29 13.01 -87.22 -1.14 -11.43 16 28 N -0.53 -10.72 10.28 -296.06 -3.04 -13.77 16 29 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.11 0.08 8.07 -2.39 -0.02 0.06 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.18 0.47 8.06 -2.91 -0.02 0.45 16 33 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 0.91 7.19 -2.39 -0.02 0.89 16 35 H 0.11 0.65 8.10 -2.39 -0.02 0.63 16 36 H 0.41 6.54 8.46 -92.71 -0.78 5.76 16 37 H 0.07 1.65 6.53 -2.39 -0.02 1.63 16 38 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.08 2.10 6.50 -2.39 -0.02 2.09 16 44 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 45 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 46 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 47 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 48 H 0.05 2.83 6.06 -2.39 -0.01 2.82 16 49 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 50 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 51 H 0.42 5.75 9.06 -74.06 -0.67 5.08 16 Total: -1.00 -77.50 410.95 -1.19 -78.69 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -0.51 Total: 16.04 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 5.97 Total: 7.88 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -7.48 Total: -120.24 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -1.20 Total: -29.77 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -77.50 -1.19 -78.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715203127.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.411 kcal (2) G-P(sol) polarization free energy of solvation -77.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds