Wall clock time and date at job start Wed Apr 1 2020 04:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38355 * 119.40773 * 2 1 4 4 C 1.38331 * 119.46277 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.82867 * 180.02562 * 4 3 2 6 6 C 1.39987 * 118.34602 * 0.02562 * 4 3 2 7 7 C 1.47523 * 120.59525 * 179.97438 * 6 4 3 8 8 O 1.21595 * 119.99941 * 90.00179 * 7 6 4 9 9 N 1.34776 * 120.00297 * 270.00214 * 7 6 4 10 10 C 1.46507 * 119.99886 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46765 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.49884 * 59.99972 * 11 10 9 13 13 C 1.53043 * 109.49370 * 180.02562 * 11 10 9 14 14 C 1.53107 * 109.49866 * 181.31859 * 13 11 10 15 15 C 1.53197 * 109.33031 * 298.65260 * 14 13 11 16 16 N 1.46917 * 108.77271 * 54.63993 * 15 14 13 17 17 C 1.36944 * 120.63123 * 126.41499 * 16 15 14 18 18 H 1.07991 * 119.99562 * 331.80454 * 17 16 15 19 19 C 1.38809 * 119.99842 * 151.80607 * 17 16 15 20 20 N 1.31617 * 120.00550 * 343.07649 * 19 17 16 21 21 Si 1.86801 * 119.99891 * 163.08073 * 19 17 16 22 22 H 1.48500 * 109.47304 * 89.99389 * 21 19 17 23 23 H 1.48501 * 109.47419 * 209.99633 * 21 19 17 24 24 H 1.48503 * 109.46978 * 330.00021 * 21 19 17 25 25 C 1.46926 * 118.74162 * 306.39006 * 16 15 14 26 26 C 1.40276 * 118.80850 * 0.27457 * 6 4 3 27 27 O 1.35427 * 119.80274 * 179.70187 * 26 6 4 28 28 N 1.31883 * 119.40860 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47619 * 90.00452 * 1 2 3 30 30 H 1.09007 * 109.46851 * 209.99676 * 1 2 3 31 31 H 1.08996 * 109.47740 * 329.99884 * 1 2 3 32 32 H 1.08005 * 120.27086 * 0.02562 * 3 2 1 33 33 H 1.08999 * 109.47670 * 269.98070 * 5 4 3 34 34 H 1.09008 * 109.46858 * 29.98016 * 5 4 3 35 35 H 1.09003 * 109.47262 * 149.97442 * 5 4 3 36 36 H 0.96996 * 120.00023 * 359.97438 * 9 7 6 37 37 H 1.09003 * 109.47146 * 60.00361 * 10 9 7 38 38 H 1.09000 * 109.46862 * 300.00046 * 10 9 7 39 39 H 1.09003 * 109.47047 * 59.99518 * 12 11 10 40 40 H 1.08993 * 109.47001 * 179.97438 * 12 11 10 41 41 H 1.08993 * 109.47140 * 300.00049 * 12 11 10 42 42 H 1.09004 * 109.45632 * 301.36570 * 13 11 10 43 43 H 1.08994 * 109.46002 * 61.33186 * 13 11 10 44 44 H 1.09008 * 109.48600 * 178.70243 * 14 13 11 45 45 H 1.08999 * 109.49213 * 58.61412 * 14 13 11 46 46 H 1.09004 * 109.58674 * 294.85141 * 15 14 13 47 47 H 1.09000 * 109.70062 * 174.49480 * 15 14 13 48 48 H 0.96999 * 120.00757 * 180.02562 * 20 19 17 49 49 H 1.09002 * 109.58661 * 293.82233 * 25 16 15 50 50 H 1.08998 * 109.59341 * 173.40028 * 25 16 15 51 51 H 0.96706 * 114.00076 * 89.99754 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5696 1.2066 0.0005 5 6 4.3406 2.5014 0.0011 6 6 4.2354 -0.0248 0.0005 7 6 5.7096 -0.0813 0.0005 8 8 6.3171 -0.1046 1.0536 9 7 6.3830 -0.1070 -1.1667 10 6 7.8470 -0.1637 -1.1666 11 6 8.3566 -0.1836 -2.6090 12 6 7.8956 1.0841 -3.3311 13 6 9.8859 -0.2435 -2.6096 14 6 10.3973 -0.2303 -4.0527 15 6 9.8643 -1.4623 -4.7909 16 7 8.4003 -1.4893 -4.6700 17 6 7.6098 -1.5823 -5.7844 18 1 7.9604 -1.1938 -6.7290 19 6 6.3580 -2.1760 -5.6996 20 7 6.0584 -2.9359 -4.6675 21 14 5.0984 -1.8967 -7.0505 22 1 5.2499 -2.9435 -8.0929 23 1 3.7313 -1.9657 -6.4747 24 1 5.3127 -0.5587 -7.6581 25 6 7.8005 -1.4151 -3.3309 26 6 3.4758 -1.2040 -0.0059 27 8 4.0992 -2.4063 -0.0122 28 7 2.1545 -1.1489 -0.0005 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6410 2.1376 0.0004 33 1 4.5273 2.8137 -1.0263 34 1 3.7614 3.2689 0.5147 35 1 5.2908 2.3582 0.5157 36 1 5.8984 -0.0888 -2.0067 37 1 8.1756 -1.0672 -0.6530 38 1 8.2444 0.7115 -0.6524 39 1 8.2931 1.9596 -2.8176 40 1 8.2593 1.0696 -4.3585 41 1 6.8065 1.1264 -3.3314 42 1 10.2832 0.6193 -2.0748 43 1 10.2137 -1.1587 -2.1167 44 1 11.4872 -0.2496 -4.0524 45 1 10.0491 0.6730 -4.5537 46 1 10.2843 -2.3647 -4.3465 47 1 10.1431 -1.4093 -5.8433 48 1 5.1837 -3.3510 -4.6085 49 1 8.0522 -2.3136 -2.7674 50 1 6.7176 -1.3285 -3.4197 51 1 4.2801 -2.7601 0.8694 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716898166.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:29 Heat of formation + Delta-G solvation = -32.737251 kcal Electronic energy + Delta-G solvation = -32356.381144 eV Core-core repulsion = 28256.114770 eV Total energy + Delta-G solvation = -4100.266374 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -40.96740 -39.35641 -38.17315 -37.33596 -34.76099 -34.30831 -33.16819 -31.91434 -31.30526 -29.88214 -28.61494 -27.72774 -26.52600 -25.53407 -25.20756 -23.36842 -22.25872 -21.76023 -20.61240 -20.20529 -18.43534 -18.23788 -17.45051 -17.23570 -16.61974 -15.97807 -15.49009 -15.12722 -14.67423 -14.52466 -14.29579 -14.00882 -13.91369 -13.60885 -13.50493 -13.48244 -13.15810 -13.14176 -13.01986 -12.70093 -12.56541 -12.27206 -12.18296 -12.10446 -11.98151 -11.64556 -11.61083 -11.31712 -10.96201 -10.85414 -10.65954 -10.41272 -10.20769 -10.17547 -10.08423 -9.82093 -9.68726 -9.57741 -9.38164 -9.35562 -8.87980 -8.74988 -8.47191 -6.64958 -5.78255 -3.21247 0.71086 1.00257 2.68572 3.24914 3.35531 3.37768 3.43725 3.44715 3.67601 4.35266 4.38363 4.48412 4.78106 4.86596 5.04860 5.11789 5.16648 5.24758 5.29625 5.35974 5.38876 5.43020 5.45864 5.51836 5.58826 5.65350 5.76675 5.81359 5.84777 5.93995 6.00691 6.03345 6.06792 6.15748 6.24732 6.34570 6.39672 6.43311 6.53234 6.60059 6.72557 6.82883 6.87490 6.96157 7.04622 7.29862 7.44502 7.59971 7.73452 7.79205 7.80930 8.35700 8.44353 9.21059 9.84447 10.41909 11.29285 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009872 B = 0.004119 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.747791 B = 6796.630369 C = 8422.044768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.166 3.834 3 C -0.190 4.190 4 C 0.010 3.990 5 C -0.124 4.124 6 C -0.201 4.201 7 C 0.575 3.425 8 O -0.546 6.546 9 N -0.700 5.700 10 C 0.135 3.865 11 C -0.103 4.103 12 C -0.126 4.126 13 C -0.095 4.095 14 C -0.135 4.135 15 C 0.143 3.857 16 N -0.588 5.588 17 C -0.254 4.254 18 H 0.064 0.936 19 C 0.005 3.995 20 N -0.897 5.897 21 Si 0.894 3.106 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.187 3.813 26 C 0.361 3.639 27 O -0.467 6.467 28 N -0.506 5.506 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.143 0.857 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.408 0.592 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.036 0.964 40 H 0.072 0.928 41 H 0.043 0.957 42 H 0.047 0.953 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.062 0.938 46 H 0.016 0.984 47 H 0.052 0.948 48 H 0.255 0.745 49 H 0.018 0.982 50 H 0.088 0.912 51 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.168 10.709 10.609 15.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.028 3.972 3 C -0.210 4.210 4 C 0.002 3.998 5 C -0.181 4.181 6 C -0.207 4.207 7 C 0.360 3.640 8 O -0.424 6.424 9 N -0.351 5.351 10 C 0.012 3.988 11 C -0.105 4.105 12 C -0.183 4.183 13 C -0.133 4.133 14 C -0.174 4.174 15 C 0.017 3.983 16 N -0.310 5.310 17 C -0.383 4.383 18 H 0.082 0.918 19 C -0.194 4.194 20 N -0.541 5.541 21 Si 0.724 3.276 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.060 3.940 26 C 0.182 3.818 27 O -0.274 6.274 28 N -0.227 5.227 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.160 0.840 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.244 0.756 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.034 0.966 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.036 0.964 50 H 0.106 0.894 51 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -5.295 9.823 10.750 15.494 hybrid contribution -0.431 0.504 -0.638 0.920 sum -5.726 10.327 10.112 15.546 Atomic orbital electron populations 1.20789 0.88284 1.03683 1.03582 1.21159 0.96936 0.87144 0.91923 1.21731 0.93619 0.99518 1.06167 1.20235 0.93672 0.94155 0.91734 1.20938 1.00392 0.93071 1.03656 1.20920 0.95230 0.94105 1.10476 1.17708 0.85851 0.76200 0.84282 1.90779 1.69399 1.50936 1.31322 1.46079 1.08109 1.72473 1.08407 1.21441 0.78489 1.01329 0.97575 1.21550 0.95954 1.00026 0.92985 1.21719 1.00006 0.95028 1.01524 1.21355 0.94277 1.00525 0.97124 1.22057 0.98351 1.00937 0.96034 1.20926 0.85964 0.93792 0.97648 1.43967 0.99276 1.85083 1.02692 1.19118 0.97727 1.32041 0.89444 0.91824 1.25017 0.99798 0.96981 0.97567 1.70005 1.21555 1.31758 1.30756 0.86429 0.81348 0.78076 0.81744 1.21368 1.21591 1.20532 1.20776 0.98872 0.90227 0.84109 1.19043 0.86273 0.84685 0.91829 1.84812 1.76483 1.32305 1.33803 1.67064 1.09246 1.30341 1.16000 0.89863 0.90168 0.90341 0.83961 0.89614 0.90277 0.90465 0.75569 0.91641 0.92137 0.94527 0.90901 0.93811 0.93401 0.92542 0.93230 0.91982 0.96631 0.92965 0.93517 0.96414 0.89436 0.73756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.16 36.00 0.37 -0.52 16 2 C 0.17 2.02 6.78 -82.53 -0.56 1.46 16 3 C -0.19 -2.06 9.41 -39.50 -0.37 -2.43 16 4 C 0.01 0.13 5.95 -103.93 -0.62 -0.49 16 5 C -0.12 -1.25 9.69 36.00 0.35 -0.90 16 6 C -0.20 -3.10 5.66 -104.69 -0.59 -3.69 16 7 C 0.58 9.72 5.42 -12.48 -0.07 9.66 16 8 O -0.55 -10.43 17.11 5.28 0.09 -10.34 16 9 N -0.70 -11.77 4.99 -61.35 -0.31 -12.08 16 10 C 0.14 2.25 4.57 -4.04 -0.02 2.23 16 11 C -0.10 -1.81 0.53 -154.39 -0.08 -1.89 16 12 C -0.13 -2.11 7.81 37.16 0.29 -1.82 16 13 C -0.09 -1.53 4.72 -26.65 -0.13 -1.65 16 14 C -0.13 -2.24 5.74 -26.57 -0.15 -2.39 16 15 C 0.14 2.92 6.52 -3.71 -0.02 2.90 16 16 N -0.59 -14.08 2.43 -172.32 -0.42 -14.50 16 17 C -0.25 -6.73 9.58 -15.06 -0.14 -6.88 16 18 H 0.06 1.67 7.88 -52.49 -0.41 1.26 16 19 C 0.01 0.15 4.92 -17.43 -0.09 0.06 16 20 N -0.90 -25.66 11.20 55.49 0.62 -25.04 16 21 Si 0.89 21.45 29.59 -169.99 -5.03 16.43 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.19 4.20 3.72 -3.71 -0.01 4.19 16 26 C 0.36 5.85 7.77 -16.61 -0.13 5.72 16 27 O -0.47 -7.61 13.01 -17.97 -0.23 -7.84 16 28 N -0.51 -7.75 10.28 -9.21 -0.09 -7.84 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 32 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.59 8.10 -51.92 -0.42 0.17 16 35 H 0.08 0.89 7.19 -51.93 -0.37 0.52 16 36 H 0.41 7.18 6.21 -40.82 -0.25 6.93 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 1.36 5.97 -51.93 -0.31 1.05 16 41 H 0.04 0.74 6.86 -51.93 -0.36 0.38 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 45 H 0.06 1.04 6.33 -51.93 -0.33 0.72 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 48 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.09 2.19 4.97 -51.93 -0.26 1.93 16 51 H 0.40 4.64 9.06 45.56 0.41 5.05 16 LS Contribution 403.37 15.07 6.08 6.08 Total: -1.00 -32.96 403.37 -8.61 -41.57 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -7.34 Total: 10.01 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -1.98 Total: 3.55 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: -0.20 Total: -59.46 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.14 Total: -18.18 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.96 -8.61 -41.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716898166.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.835 kcal (2) G-P(sol) polarization free energy of solvation -32.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds