Wall clock time and date at job start Wed Apr 1 2020 04:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38355 * 119.40773 * 2 1 4 4 C 1.38331 * 119.46277 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.82867 * 180.02562 * 4 3 2 6 6 C 1.39987 * 118.34602 * 0.02562 * 4 3 2 7 7 C 1.47523 * 120.59525 * 179.97438 * 6 4 3 8 8 O 1.21595 * 119.99941 * 90.00179 * 7 6 4 9 9 N 1.34776 * 120.00297 * 270.00214 * 7 6 4 10 10 C 1.46507 * 119.99886 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46765 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.49884 * 59.99972 * 11 10 9 13 13 C 1.53043 * 109.49370 * 180.02562 * 11 10 9 14 14 C 1.53107 * 109.49866 * 181.31859 * 13 11 10 15 15 C 1.53197 * 109.33031 * 298.65260 * 14 13 11 16 16 N 1.46917 * 108.77271 * 54.63993 * 15 14 13 17 17 C 1.36944 * 120.63123 * 126.41499 * 16 15 14 18 18 H 1.07991 * 119.99562 * 331.80454 * 17 16 15 19 19 C 1.38809 * 119.99842 * 151.80607 * 17 16 15 20 20 N 1.31617 * 120.00550 * 343.07649 * 19 17 16 21 21 Si 1.86801 * 119.99891 * 163.08073 * 19 17 16 22 22 H 1.48500 * 109.47304 * 89.99389 * 21 19 17 23 23 H 1.48501 * 109.47419 * 209.99633 * 21 19 17 24 24 H 1.48503 * 109.46978 * 330.00021 * 21 19 17 25 25 C 1.46926 * 118.74162 * 306.39006 * 16 15 14 26 26 C 1.40276 * 118.80850 * 0.27457 * 6 4 3 27 27 O 1.35427 * 119.80274 * 179.70187 * 26 6 4 28 28 N 1.31883 * 119.40860 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47619 * 90.00452 * 1 2 3 30 30 H 1.09007 * 109.46851 * 209.99676 * 1 2 3 31 31 H 1.08996 * 109.47740 * 329.99884 * 1 2 3 32 32 H 1.08005 * 120.27086 * 0.02562 * 3 2 1 33 33 H 1.08999 * 109.47670 * 269.98070 * 5 4 3 34 34 H 1.09008 * 109.46858 * 29.98016 * 5 4 3 35 35 H 1.09003 * 109.47262 * 149.97442 * 5 4 3 36 36 H 0.96996 * 120.00023 * 359.97438 * 9 7 6 37 37 H 1.09003 * 109.47146 * 60.00361 * 10 9 7 38 38 H 1.09000 * 109.46862 * 300.00046 * 10 9 7 39 39 H 1.09003 * 109.47047 * 59.99518 * 12 11 10 40 40 H 1.08993 * 109.47001 * 179.97438 * 12 11 10 41 41 H 1.08993 * 109.47140 * 300.00049 * 12 11 10 42 42 H 1.09004 * 109.45632 * 301.36570 * 13 11 10 43 43 H 1.08994 * 109.46002 * 61.33186 * 13 11 10 44 44 H 1.09008 * 109.48600 * 178.70243 * 14 13 11 45 45 H 1.08999 * 109.49213 * 58.61412 * 14 13 11 46 46 H 1.09004 * 109.58674 * 294.85141 * 15 14 13 47 47 H 1.09000 * 109.70062 * 174.49480 * 15 14 13 48 48 H 0.96999 * 120.00757 * 180.02562 * 20 19 17 49 49 H 1.09002 * 109.58661 * 293.82233 * 25 16 15 50 50 H 1.08998 * 109.59341 * 173.40028 * 25 16 15 51 51 H 0.96706 * 114.00076 * 89.99754 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5696 1.2066 0.0005 5 6 4.3406 2.5014 0.0011 6 6 4.2354 -0.0248 0.0005 7 6 5.7096 -0.0813 0.0005 8 8 6.3171 -0.1046 1.0536 9 7 6.3830 -0.1070 -1.1667 10 6 7.8470 -0.1637 -1.1666 11 6 8.3566 -0.1836 -2.6090 12 6 7.8956 1.0841 -3.3311 13 6 9.8859 -0.2435 -2.6096 14 6 10.3973 -0.2303 -4.0527 15 6 9.8643 -1.4623 -4.7909 16 7 8.4003 -1.4893 -4.6700 17 6 7.6098 -1.5823 -5.7844 18 1 7.9604 -1.1938 -6.7290 19 6 6.3580 -2.1760 -5.6996 20 7 6.0584 -2.9359 -4.6675 21 14 5.0984 -1.8967 -7.0505 22 1 5.2499 -2.9435 -8.0929 23 1 3.7313 -1.9657 -6.4747 24 1 5.3127 -0.5587 -7.6581 25 6 7.8005 -1.4151 -3.3309 26 6 3.4758 -1.2040 -0.0059 27 8 4.0992 -2.4063 -0.0122 28 7 2.1545 -1.1489 -0.0005 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6410 2.1376 0.0004 33 1 4.5273 2.8137 -1.0263 34 1 3.7614 3.2689 0.5147 35 1 5.2908 2.3582 0.5157 36 1 5.8984 -0.0888 -2.0067 37 1 8.1756 -1.0672 -0.6530 38 1 8.2444 0.7115 -0.6524 39 1 8.2931 1.9596 -2.8176 40 1 8.2593 1.0696 -4.3585 41 1 6.8065 1.1264 -3.3314 42 1 10.2832 0.6193 -2.0748 43 1 10.2137 -1.1587 -2.1167 44 1 11.4872 -0.2496 -4.0524 45 1 10.0491 0.6730 -4.5537 46 1 10.2843 -2.3647 -4.3465 47 1 10.1431 -1.4093 -5.8433 48 1 5.1837 -3.3510 -4.6085 49 1 8.0522 -2.3136 -2.7674 50 1 6.7176 -1.3285 -3.4197 51 1 4.2801 -2.7601 0.8694 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716898166.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:25 Heat of formation + Delta-G solvation = -57.071592 kcal Electronic energy + Delta-G solvation = -32357.436360 eV Core-core repulsion = 28256.114770 eV Total energy + Delta-G solvation = -4101.321590 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 3.93 seconds Orbital eigenvalues (eV) -42.06789 -40.72112 -39.63365 -38.47487 -36.34613 -35.30224 -34.86986 -33.08912 -32.69594 -31.62553 -29.63292 -28.54647 -27.95521 -27.29482 -26.74113 -24.50406 -23.88717 -22.88662 -22.07687 -21.46969 -19.75453 -19.56624 -18.78768 -18.50775 -18.26171 -17.29711 -16.83980 -16.65215 -16.06869 -15.89796 -15.56851 -15.40113 -15.21288 -15.02909 -14.87589 -14.69949 -14.39420 -14.22108 -14.06247 -13.95207 -13.78876 -13.71676 -13.26274 -13.12193 -13.03972 -12.97837 -12.86513 -12.73774 -12.64926 -12.58029 -12.31619 -12.17069 -11.87598 -11.73586 -11.50157 -11.40877 -11.12380 -10.97722 -10.64290 -10.52865 -10.50520 -10.13246 -9.88469 -8.63004 -7.84881 -5.30174 -0.31389 0.02144 1.36928 1.42734 1.45160 1.53904 2.10903 2.30814 2.50234 2.60399 3.28110 3.39314 3.53821 3.56875 3.66518 3.92776 3.96507 4.03520 4.04242 4.18173 4.27888 4.36701 4.49063 4.51864 4.54122 4.56712 4.64565 4.71485 4.73954 4.78348 4.80290 4.93336 4.99056 4.99942 5.04111 5.10115 5.11378 5.16354 5.17661 5.25722 5.30773 5.40179 5.46055 5.49567 5.50988 5.62159 5.72023 5.78738 6.35800 6.39479 6.39562 6.79333 7.00837 7.16697 7.89178 8.41089 9.19200 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009872 B = 0.004119 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.747791 B = 6796.630369 C = 8422.044768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.156 3.844 3 C -0.177 4.177 4 C 0.007 3.993 5 C -0.121 4.121 6 C -0.225 4.225 7 C 0.582 3.418 8 O -0.573 6.573 9 N -0.700 5.700 10 C 0.141 3.859 11 C -0.091 4.091 12 C -0.117 4.117 13 C -0.094 4.094 14 C -0.122 4.122 15 C 0.135 3.865 16 N -0.604 5.604 17 C -0.255 4.255 18 H 0.066 0.934 19 C -0.045 4.045 20 N -0.929 5.929 21 Si 0.953 3.047 22 H -0.288 1.288 23 H -0.299 1.299 24 H -0.266 1.266 25 C 0.200 3.800 26 C 0.336 3.664 27 O -0.492 6.492 28 N -0.534 5.534 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.188 0.812 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.059 0.941 36 H 0.403 0.597 37 H 0.048 0.952 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.035 0.965 42 H 0.083 0.917 43 H 0.049 0.951 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.005 0.995 47 H 0.052 0.948 48 H 0.245 0.755 49 H -0.023 1.023 50 H 0.059 0.941 51 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.555 14.336 10.643 18.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.019 3.981 3 C -0.196 4.196 4 C -0.001 4.001 5 C -0.177 4.177 6 C -0.232 4.232 7 C 0.367 3.633 8 O -0.453 6.453 9 N -0.349 5.349 10 C 0.017 3.983 11 C -0.093 4.093 12 C -0.175 4.175 13 C -0.132 4.132 14 C -0.161 4.161 15 C 0.010 3.990 16 N -0.327 5.327 17 C -0.385 4.385 18 H 0.084 0.916 19 C -0.241 4.241 20 N -0.575 5.575 21 Si 0.782 3.218 22 H -0.215 1.215 23 H -0.225 1.225 24 H -0.190 1.190 25 C 0.074 3.926 26 C 0.157 3.843 27 O -0.301 6.301 28 N -0.256 5.256 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.132 0.868 32 H 0.206 0.794 33 H 0.113 0.887 34 H 0.131 0.869 35 H 0.078 0.922 36 H 0.239 0.761 37 H 0.067 0.933 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.101 0.899 43 H 0.068 0.932 44 H 0.099 0.901 45 H 0.085 0.915 46 H 0.023 0.977 47 H 0.071 0.929 48 H 0.054 0.946 49 H -0.005 1.005 50 H 0.077 0.923 51 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -5.648 13.469 10.777 18.151 hybrid contribution -0.312 -0.662 -0.655 0.982 sum -5.960 12.807 10.122 17.378 Atomic orbital electron populations 1.20931 0.85439 1.05229 1.04455 1.21966 0.98821 0.86863 0.90479 1.22201 0.92906 1.00783 1.03706 1.20655 0.94778 0.93967 0.90729 1.21005 0.99740 0.92514 1.04419 1.20906 0.94142 0.95304 1.12829 1.17913 0.86599 0.75112 0.83645 1.90745 1.70253 1.52274 1.32066 1.46105 1.08196 1.72357 1.08270 1.21395 0.78568 1.01478 0.96856 1.21345 0.97202 0.97885 0.92830 1.21630 0.99663 0.95476 1.00686 1.21390 0.92699 1.01831 0.97293 1.21928 1.00081 0.98605 0.95482 1.21122 0.84004 0.95496 0.98395 1.44229 1.00767 1.85189 1.02471 1.19430 0.98044 1.30715 0.90303 0.91604 1.25670 1.01556 0.97283 0.99549 1.70189 1.21219 1.33353 1.32751 0.85486 0.78634 0.78384 0.79279 1.21483 1.22526 1.19014 1.20494 0.97395 0.91009 0.83735 1.19238 0.86986 0.84621 0.93423 1.84758 1.76891 1.33181 1.35315 1.67097 1.08842 1.32347 1.17264 0.89097 0.90656 0.86811 0.79438 0.88680 0.86924 0.92241 0.76104 0.93329 0.89909 0.91252 0.92512 0.94542 0.89866 0.93185 0.90084 0.91529 0.97708 0.92944 0.94588 1.00533 0.92304 0.72391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.45 10.16 71.23 0.72 -0.73 16 2 C 0.16 3.56 6.78 42.58 0.29 3.85 16 3 C -0.18 -3.32 9.41 22.32 0.21 -3.11 16 4 C 0.01 0.16 5.95 -19.42 -0.12 0.04 16 5 C -0.12 -2.12 9.69 71.23 0.69 -1.43 16 6 C -0.23 -7.10 5.66 -19.91 -0.11 -7.21 16 7 C 0.58 20.25 5.42 86.69 0.47 20.72 16 8 O -0.57 -22.45 17.11 -4.01 -0.07 -22.52 16 9 N -0.70 -24.18 4.99 -466.26 -2.33 -26.51 16 10 C 0.14 4.67 4.57 86.38 0.39 5.06 16 11 C -0.09 -3.14 0.53 -52.10 -0.03 -3.17 16 12 C -0.12 -3.74 7.81 71.98 0.56 -3.18 16 13 C -0.09 -2.84 4.72 30.64 0.14 -2.69 16 14 C -0.12 -3.77 5.74 30.70 0.18 -3.59 16 15 C 0.14 5.49 6.52 86.37 0.56 6.05 16 16 N -0.60 -29.46 2.43 -699.11 -1.70 -31.17 16 17 C -0.25 -13.71 9.58 84.03 0.81 -12.91 16 18 H 0.07 3.46 7.88 -2.91 -0.02 3.44 16 19 C -0.04 -2.50 4.92 84.86 0.42 -2.08 16 20 N -0.93 -55.64 11.20 21.65 0.24 -55.40 16 21 Si 0.95 44.97 29.59 68.60 2.03 47.00 16 22 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 23 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 C 0.20 9.35 3.72 86.36 0.32 9.67 16 26 C 0.34 11.44 7.77 85.13 0.66 12.10 16 27 O -0.49 -17.50 13.01 -87.23 -1.14 -18.63 16 28 N -0.53 -16.69 10.28 -296.06 -3.04 -19.74 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.11 0.79 8.07 -2.39 -0.02 0.77 16 32 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.50 16 34 H 0.11 1.21 8.10 -2.38 -0.02 1.19 16 35 H 0.06 1.28 7.19 -2.39 -0.02 1.27 16 36 H 0.40 14.81 6.21 -92.71 -0.58 14.23 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.06 2.01 5.97 -2.39 -0.01 2.00 16 41 H 0.04 1.20 6.86 -2.39 -0.02 1.18 16 42 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 45 H 0.07 2.04 6.33 -2.39 -0.02 2.02 16 46 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 47 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 48 H 0.24 14.61 8.31 -92.71 -0.77 13.84 16 49 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 50 H 0.06 3.10 4.97 -2.39 -0.01 3.09 16 51 H 0.42 10.90 9.06 -74.05 -0.67 10.22 16 Total: -1.00 -75.84 403.37 -0.12 -75.96 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: -0.29 Total: 33.61 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 6.17 Total: 17.40 kcal Atomic # 7 Polarization: -125.98 SS G_CDS: -6.83 Total: -132.81 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -1.20 Total: -41.15 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -75.84 -0.12 -75.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716898166.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.889 kcal (2) G-P(sol) polarization free energy of solvation -75.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.94 seconds