Wall clock time and date at job start Wed Apr 1 2020 04:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38356 * 119.46031 * 2 1 4 4 C 1.38353 * 119.29799 * 179.74983 * 3 2 1 5 5 C 1.50709 * 120.85060 * 180.24303 * 4 3 2 6 6 C 1.40021 * 118.29234 * 0.51544 * 4 3 2 7 7 C 1.47846 * 120.55853 * 179.75284 * 6 4 3 8 8 O 1.21557 * 119.99569 * 269.97664 * 7 6 4 9 9 N 1.34770 * 119.99875 * 89.97582 * 7 6 4 10 10 C 1.46918 * 120.63559 * 359.72051 * 9 7 6 11 11 C 1.53620 * 108.54634 * 126.36841 * 10 9 7 12 12 C 1.53040 * 109.24513 * 54.85766 * 11 10 9 13 13 C 1.53044 * 109.53354 * 298.51432 * 12 11 10 14 14 C 1.53005 * 109.49484 * 181.31515 * 13 12 11 15 15 O 1.42899 * 109.47043 * 180.16208 * 14 13 12 16 16 N 1.46498 * 109.52389 * 301.39467 * 13 12 11 17 17 C 1.36938 * 119.99834 * 179.86130 * 16 13 12 18 18 H 1.08001 * 120.00161 * 359.97438 * 17 16 13 19 19 C 1.38815 * 119.99694 * 180.02562 * 17 16 13 20 20 N 1.31613 * 120.00123 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99865 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46822 * 89.99969 * 21 19 17 23 23 H 1.48502 * 109.46867 * 209.99710 * 21 19 17 24 24 H 1.48499 * 109.47162 * 330.00073 * 21 19 17 25 25 C 1.46929 * 120.62554 * 179.97438 * 9 7 6 26 26 C 1.39517 * 118.88281 * 359.72899 * 6 4 3 27 27 C 1.50700 * 119.71776 * 180.02562 * 26 6 4 28 28 N 1.31699 * 120.56696 * 0.02562 * 26 6 4 29 29 H 1.09002 * 109.47152 * 269.72668 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.72769 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.72749 * 1 2 3 32 32 H 1.07990 * 120.34619 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.46926 * 270.27195 * 5 4 3 34 34 H 1.08998 * 109.46820 * 30.27753 * 5 4 3 35 35 H 1.08995 * 109.46713 * 150.27972 * 5 4 3 36 36 H 1.08999 * 109.58611 * 246.20199 * 10 9 7 37 37 H 1.09000 * 109.58701 * 6.62284 * 10 9 7 38 38 H 1.09001 * 109.63619 * 294.86449 * 11 10 9 39 39 H 1.09006 * 109.45763 * 174.74257 * 11 10 9 40 40 H 1.08992 * 109.46432 * 178.48944 * 12 11 10 41 41 H 1.09001 * 109.44937 * 58.51874 * 12 11 10 42 42 H 1.09001 * 109.46882 * 300.16090 * 14 13 12 43 43 H 1.08993 * 109.47029 * 60.15703 * 14 13 12 44 44 H 0.96703 * 114.00153 * 180.02562 * 15 14 13 45 45 H 0.97000 * 119.99898 * 359.85126 * 16 13 12 46 46 H 0.97005 * 120.00355 * 180.02562 * 20 19 17 47 47 H 1.08993 * 109.59085 * 353.37652 * 25 9 7 48 48 H 1.09007 * 109.58545 * 113.79944 * 25 9 7 49 49 H 1.09001 * 109.46644 * 270.01800 * 27 26 6 50 50 H 1.08995 * 109.47536 * 30.01607 * 27 26 6 51 51 H 1.09004 * 109.47132 * 150.02355 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2047 0.0000 4 6 3.5710 1.2007 0.0053 5 6 4.3475 2.4924 0.0109 6 6 4.2312 -0.0340 -0.0007 7 6 5.7083 -0.0966 -0.0009 8 8 6.3155 -0.1177 -1.0538 9 7 6.3816 -0.1303 1.1661 10 6 5.6620 -0.0993 2.4466 11 6 6.1200 -1.2963 3.2936 12 6 7.6441 -1.2650 3.4287 13 6 8.2831 -1.3831 2.0431 14 6 9.8069 -1.3846 2.1820 15 8 10.4030 -1.4911 0.8877 16 7 7.8487 -2.6298 1.4082 17 6 8.2936 -2.9503 0.1533 18 1 8.9643 -2.2838 -0.3684 19 6 7.8815 -4.1314 -0.4484 20 7 7.0637 -4.9434 0.1872 21 14 8.4877 -4.5683 -2.1605 22 1 9.7452 -5.3514 -2.0554 23 1 7.4572 -5.3780 -2.8588 24 1 8.7428 -3.3230 -2.9281 25 6 7.8494 -0.1932 1.1819 26 6 3.4716 -1.2043 -0.0058 27 6 4.1627 -2.5435 -0.0116 28 7 2.1558 -1.1487 -0.0056 29 1 -0.3633 -0.0049 1.0277 30 1 -0.3633 -0.8875 -0.5181 31 1 -0.3633 0.8925 -0.5096 32 1 1.6444 2.1381 0.0004 33 1 4.5344 2.8084 -1.0154 34 1 3.7721 3.2599 0.5285 35 1 5.2976 2.3428 0.5237 36 1 5.8876 0.8298 2.9701 37 1 4.5894 -0.1675 2.2648 38 1 5.8166 -2.2247 2.8098 39 1 5.6658 -1.2362 4.2827 40 1 7.9707 -2.0977 4.0514 41 1 7.9483 -0.3254 3.8899 42 1 10.1295 -0.4574 2.6554 43 1 10.1149 -2.2317 2.7948 44 1 11.3700 -1.4985 0.8994 45 1 7.2461 -3.2283 1.8767 46 1 6.7760 -5.7690 -0.2331 47 1 8.2206 -0.3233 0.1654 48 1 8.2501 0.7285 1.6041 49 1 4.3296 -2.8616 -1.0407 50 1 5.1201 -2.4606 0.5028 51 1 3.5383 -3.2769 0.4986 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717254721.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:08 Heat of formation + Delta-G solvation = -34.632473 kcal Electronic energy + Delta-G solvation = -33675.522350 eV Core-core repulsion = 29575.173794 eV Total energy + Delta-G solvation = -4100.348557 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.78026 -39.35532 -37.60455 -35.71180 -34.18203 -33.79131 -33.42769 -32.15628 -31.03165 -29.03569 -28.52108 -27.79148 -27.25952 -25.36280 -24.96885 -23.46400 -22.11616 -21.60439 -20.93857 -19.54109 -18.35069 -17.37895 -16.87335 -16.86098 -16.18623 -15.87325 -15.16861 -14.76333 -14.63918 -14.28771 -14.19710 -13.97805 -13.67284 -13.47804 -13.30865 -13.21035 -12.96302 -12.90832 -12.83159 -12.75833 -12.53571 -12.26022 -12.16749 -12.04558 -11.61979 -11.50234 -11.48255 -11.44789 -11.17192 -10.78771 -10.69078 -10.61094 -10.43850 -10.14758 -9.73386 -9.69516 -9.52991 -9.34967 -9.09678 -8.97545 -8.77326 -8.52983 -8.04953 -6.79333 -5.54697 -2.80413 1.06967 1.32098 3.09988 3.46674 3.59661 3.65754 3.72003 3.79010 4.31903 4.58882 4.70487 4.75920 4.80266 4.85904 5.11339 5.13031 5.21995 5.30111 5.38626 5.44034 5.46973 5.48959 5.51257 5.52872 5.63222 5.70015 5.73901 5.78743 5.83121 5.87412 5.89914 5.99185 6.01576 6.04181 6.09316 6.19054 6.26427 6.29022 6.33044 6.36416 6.50674 6.62002 6.67933 6.78817 6.90009 7.04143 7.10763 7.90850 8.15322 8.18978 8.37430 8.62502 8.72145 9.76972 10.23128 10.59642 11.68081 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011196 B = 0.004838 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.348519 B = 5786.168413 C = 6867.054378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.139 3.861 3 C -0.191 4.191 4 C -0.010 4.010 5 C -0.118 4.118 6 C -0.176 4.176 7 C 0.577 3.423 8 O -0.519 6.519 9 N -0.587 5.587 10 C 0.112 3.888 11 C -0.131 4.131 12 C -0.115 4.115 13 C 0.189 3.811 14 C 0.076 3.924 15 O -0.540 6.540 16 N -0.702 5.702 17 C -0.199 4.199 18 H 0.090 0.910 19 C -0.018 4.018 20 N -0.942 5.942 21 Si 0.896 3.104 22 H -0.296 1.296 23 H -0.297 1.297 24 H -0.283 1.283 25 C 0.111 3.889 26 C 0.183 3.817 27 C -0.107 4.107 28 N -0.490 5.490 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.134 0.866 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.023 0.977 43 H 0.040 0.960 44 H 0.354 0.646 45 H 0.382 0.618 46 H 0.249 0.751 47 H 0.105 0.895 48 H 0.045 0.955 49 H 0.081 0.919 50 H 0.103 0.897 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.155 14.784 8.364 18.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.001 3.999 3 C -0.211 4.211 4 C -0.018 4.018 5 C -0.175 4.175 6 C -0.181 4.181 7 C 0.363 3.637 8 O -0.395 6.395 9 N -0.319 5.319 10 C -0.011 4.011 11 C -0.169 4.169 12 C -0.153 4.153 13 C 0.095 3.905 14 C -0.005 4.005 15 O -0.342 6.342 16 N -0.343 5.343 17 C -0.330 4.330 18 H 0.108 0.892 19 C -0.212 4.212 20 N -0.593 5.593 21 Si 0.729 3.271 22 H -0.225 1.225 23 H -0.224 1.224 24 H -0.208 1.208 25 C -0.013 4.013 26 C 0.045 3.955 27 C -0.164 4.164 28 N -0.201 5.201 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.152 0.848 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.041 0.959 43 H 0.058 0.942 44 H 0.198 0.802 45 H 0.216 0.784 46 H 0.059 0.941 47 H 0.123 0.877 48 H 0.063 0.937 49 H 0.100 0.900 50 H 0.121 0.879 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.862 13.971 7.416 17.664 hybrid contribution 1.152 0.169 -0.559 1.291 sum -6.711 14.140 6.857 17.088 Atomic orbital electron populations 1.20710 0.88934 1.03346 1.02971 1.21372 0.96924 0.88290 0.93316 1.21621 0.93596 0.99188 1.06675 1.20267 0.93729 0.94374 0.93465 1.20858 0.99899 0.93410 1.03321 1.20766 0.95192 0.94333 1.07815 1.17785 0.85757 0.76229 0.83961 1.90807 1.68903 1.48941 1.30805 1.47736 1.07244 1.72211 1.04688 1.21690 0.96526 0.98117 0.84776 1.21941 0.96077 0.99614 0.99316 1.21620 0.95296 1.01554 0.96808 1.19936 0.90507 0.89084 0.90958 1.22745 0.95469 0.97103 0.85148 1.86881 1.22280 1.97014 1.28065 1.42418 1.55799 1.18588 1.17452 1.19493 1.20082 1.02195 0.91245 0.89193 1.24586 1.00772 0.97861 0.97959 1.69637 1.38933 1.13047 1.37642 0.86310 0.77405 0.77756 0.85612 1.22458 1.22409 1.20840 1.22145 0.77936 0.96734 1.04533 1.21680 0.88444 0.95488 0.89911 1.20878 1.00956 0.90307 1.04300 1.67449 1.09187 1.28818 1.14615 0.90423 0.90417 0.90870 0.84817 0.90117 0.90789 0.90982 0.92051 0.90843 0.89974 0.91506 0.91451 0.92030 0.95933 0.94202 0.80176 0.78354 0.94149 0.87665 0.93683 0.90028 0.87852 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 10.16 36.01 0.37 -0.62 16 2 C 0.14 1.90 6.78 -82.51 -0.56 1.34 16 3 C -0.19 -2.38 9.43 -39.50 -0.37 -2.75 16 4 C -0.01 -0.15 5.95 -103.91 -0.62 -0.77 16 5 C -0.12 -1.38 9.69 36.01 0.35 -1.03 16 6 C -0.18 -3.11 3.64 -104.82 -0.38 -3.50 16 7 C 0.58 11.51 4.23 -12.33 -0.05 11.46 16 8 O -0.52 -12.70 16.52 5.32 0.09 -12.61 16 9 N -0.59 -10.27 2.88 -173.65 -0.50 -10.77 16 10 C 0.11 1.58 6.37 -3.49 -0.02 1.56 16 11 C -0.13 -1.85 5.93 -26.39 -0.16 -2.00 16 12 C -0.11 -1.64 4.76 -26.69 -0.13 -1.77 16 13 C 0.19 3.41 0.68 -131.72 -0.09 3.32 16 14 C 0.08 1.28 6.08 37.16 0.23 1.51 16 15 O -0.54 -10.05 10.11 -35.23 -0.36 -10.41 16 16 N -0.70 -16.12 4.75 -47.13 -0.22 -16.34 16 17 C -0.20 -5.36 8.21 -15.06 -0.12 -5.48 16 18 H 0.09 2.54 5.28 -52.49 -0.28 2.26 16 19 C -0.02 -0.52 5.50 -17.43 -0.10 -0.61 16 20 N -0.94 -27.59 13.06 55.49 0.72 -26.87 16 21 Si 0.90 23.90 29.55 -169.99 -5.02 18.88 16 22 H -0.30 -7.86 7.11 56.52 0.40 -7.45 16 23 H -0.30 -8.05 7.11 56.52 0.40 -7.65 16 24 H -0.28 -7.67 7.11 56.52 0.40 -7.27 16 25 C 0.11 2.04 4.84 -3.73 -0.02 2.02 16 26 C 0.18 3.39 6.69 -82.17 -0.55 2.84 16 27 C -0.11 -2.20 9.79 36.01 0.35 -1.85 16 28 N -0.49 -8.33 10.17 -5.42 -0.06 -8.38 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 32 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 35 H 0.07 0.91 7.19 -51.93 -0.37 0.53 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.05 6.23 -51.93 -0.32 0.72 16 38 H 0.08 1.42 6.75 -51.93 -0.35 1.07 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.35 4.85 9.12 45.56 0.42 5.26 16 45 H 0.38 9.39 6.43 -40.82 -0.26 9.12 16 46 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.11 2.41 5.69 -51.93 -0.30 2.12 16 48 H 0.04 0.72 8.14 -51.92 -0.42 0.29 16 49 H 0.08 1.82 8.14 -51.93 -0.42 1.39 16 50 H 0.10 2.35 7.07 -51.93 -0.37 1.99 16 51 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 LS Contribution 401.10 15.07 6.04 6.04 Total: -1.00 -34.10 401.10 -8.48 -42.58 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -7.31 Total: 14.21 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -1.87 Total: 3.67 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: -0.06 Total: -62.37 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.27 Total: -23.02 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -5.02 Total: 18.88 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.10 -8.48 -42.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717254721.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.948 kcal (2) G-P(sol) polarization free energy of solvation -34.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds