Wall clock time and date at job start Wed Apr 1 2020 04:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38356 * 119.46031 * 2 1 4 4 C 1.38353 * 119.29799 * 179.74983 * 3 2 1 5 5 C 1.50709 * 120.85060 * 180.24303 * 4 3 2 6 6 C 1.40021 * 118.29234 * 0.51544 * 4 3 2 7 7 C 1.47846 * 120.55853 * 179.75284 * 6 4 3 8 8 O 1.21557 * 119.99569 * 269.97664 * 7 6 4 9 9 N 1.34770 * 119.99875 * 89.97582 * 7 6 4 10 10 C 1.46918 * 120.63559 * 359.72051 * 9 7 6 11 11 C 1.53620 * 108.54634 * 126.36841 * 10 9 7 12 12 C 1.53040 * 109.24513 * 54.85766 * 11 10 9 13 13 C 1.53044 * 109.53354 * 298.51432 * 12 11 10 14 14 C 1.53005 * 109.49484 * 181.31515 * 13 12 11 15 15 O 1.42899 * 109.47043 * 180.16208 * 14 13 12 16 16 N 1.46498 * 109.52389 * 301.39467 * 13 12 11 17 17 C 1.36938 * 119.99834 * 179.86130 * 16 13 12 18 18 H 1.08001 * 120.00161 * 359.97438 * 17 16 13 19 19 C 1.38815 * 119.99694 * 180.02562 * 17 16 13 20 20 N 1.31613 * 120.00123 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99865 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46822 * 89.99969 * 21 19 17 23 23 H 1.48502 * 109.46867 * 209.99710 * 21 19 17 24 24 H 1.48499 * 109.47162 * 330.00073 * 21 19 17 25 25 C 1.46929 * 120.62554 * 179.97438 * 9 7 6 26 26 C 1.39517 * 118.88281 * 359.72899 * 6 4 3 27 27 C 1.50700 * 119.71776 * 180.02562 * 26 6 4 28 28 N 1.31699 * 120.56696 * 0.02562 * 26 6 4 29 29 H 1.09002 * 109.47152 * 269.72668 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.72769 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.72749 * 1 2 3 32 32 H 1.07990 * 120.34619 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.46926 * 270.27195 * 5 4 3 34 34 H 1.08998 * 109.46820 * 30.27753 * 5 4 3 35 35 H 1.08995 * 109.46713 * 150.27972 * 5 4 3 36 36 H 1.08999 * 109.58611 * 246.20199 * 10 9 7 37 37 H 1.09000 * 109.58701 * 6.62284 * 10 9 7 38 38 H 1.09001 * 109.63619 * 294.86449 * 11 10 9 39 39 H 1.09006 * 109.45763 * 174.74257 * 11 10 9 40 40 H 1.08992 * 109.46432 * 178.48944 * 12 11 10 41 41 H 1.09001 * 109.44937 * 58.51874 * 12 11 10 42 42 H 1.09001 * 109.46882 * 300.16090 * 14 13 12 43 43 H 1.08993 * 109.47029 * 60.15703 * 14 13 12 44 44 H 0.96703 * 114.00153 * 180.02562 * 15 14 13 45 45 H 0.97000 * 119.99898 * 359.85126 * 16 13 12 46 46 H 0.97005 * 120.00355 * 180.02562 * 20 19 17 47 47 H 1.08993 * 109.59085 * 353.37652 * 25 9 7 48 48 H 1.09007 * 109.58545 * 113.79944 * 25 9 7 49 49 H 1.09001 * 109.46644 * 270.01800 * 27 26 6 50 50 H 1.08995 * 109.47536 * 30.01607 * 27 26 6 51 51 H 1.09004 * 109.47132 * 150.02355 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2047 0.0000 4 6 3.5710 1.2007 0.0053 5 6 4.3475 2.4924 0.0109 6 6 4.2312 -0.0340 -0.0007 7 6 5.7083 -0.0966 -0.0009 8 8 6.3155 -0.1177 -1.0538 9 7 6.3816 -0.1303 1.1661 10 6 5.6620 -0.0993 2.4466 11 6 6.1200 -1.2963 3.2936 12 6 7.6441 -1.2650 3.4287 13 6 8.2831 -1.3831 2.0431 14 6 9.8069 -1.3846 2.1820 15 8 10.4030 -1.4911 0.8877 16 7 7.8487 -2.6298 1.4082 17 6 8.2936 -2.9503 0.1533 18 1 8.9643 -2.2838 -0.3684 19 6 7.8815 -4.1314 -0.4484 20 7 7.0637 -4.9434 0.1872 21 14 8.4877 -4.5683 -2.1605 22 1 9.7452 -5.3514 -2.0554 23 1 7.4572 -5.3780 -2.8588 24 1 8.7428 -3.3230 -2.9281 25 6 7.8494 -0.1932 1.1819 26 6 3.4716 -1.2043 -0.0058 27 6 4.1627 -2.5435 -0.0116 28 7 2.1558 -1.1487 -0.0056 29 1 -0.3633 -0.0049 1.0277 30 1 -0.3633 -0.8875 -0.5181 31 1 -0.3633 0.8925 -0.5096 32 1 1.6444 2.1381 0.0004 33 1 4.5344 2.8084 -1.0154 34 1 3.7721 3.2599 0.5285 35 1 5.2976 2.3428 0.5237 36 1 5.8876 0.8298 2.9701 37 1 4.5894 -0.1675 2.2648 38 1 5.8166 -2.2247 2.8098 39 1 5.6658 -1.2362 4.2827 40 1 7.9707 -2.0977 4.0514 41 1 7.9483 -0.3254 3.8899 42 1 10.1295 -0.4574 2.6554 43 1 10.1149 -2.2317 2.7948 44 1 11.3700 -1.4985 0.8994 45 1 7.2461 -3.2283 1.8767 46 1 6.7760 -5.7690 -0.2331 47 1 8.2206 -0.3233 0.1654 48 1 8.2501 0.7285 1.6041 49 1 4.3296 -2.8616 -1.0407 50 1 5.1201 -2.4606 0.5028 51 1 3.5383 -3.2769 0.4986 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717254721.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:53 Heat of formation + Delta-G solvation = -60.442716 kcal Electronic energy + Delta-G solvation = -33676.641566 eV Core-core repulsion = 29575.173794 eV Total energy + Delta-G solvation = -4101.467773 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 14.48 seconds Orbital eigenvalues (eV) -42.07057 -40.69093 -39.11223 -37.12477 -35.59648 -35.19386 -34.75878 -33.76299 -32.52702 -30.50701 -30.03501 -28.98392 -28.39520 -26.66185 -26.30947 -25.47936 -23.36041 -22.86634 -22.11207 -20.90166 -19.81049 -19.17318 -18.28783 -18.08129 -17.75161 -17.34628 -16.68700 -16.02057 -15.90597 -15.82841 -15.63180 -15.54717 -15.07133 -14.94643 -14.55924 -14.44337 -14.29408 -14.15739 -14.06021 -13.88641 -13.72789 -13.60091 -13.51901 -13.19717 -13.14492 -12.97956 -12.86861 -12.72092 -12.71754 -12.62419 -12.51130 -12.09041 -11.94593 -11.78497 -11.37103 -11.30116 -11.13900 -10.79725 -10.53924 -10.49142 -10.38790 -9.75252 -9.53663 -8.75129 -7.75718 -4.95406 -0.11819 0.16612 1.38904 1.42547 1.50361 1.60038 2.13184 2.59037 2.65930 3.16025 3.41370 3.48186 3.61971 3.64311 3.71602 3.90894 3.95195 4.06723 4.12141 4.18883 4.29513 4.38966 4.39780 4.52633 4.54424 4.55852 4.58752 4.60292 4.64539 4.64558 4.75147 4.77834 4.84162 4.84238 4.93173 4.97242 5.01750 5.05377 5.10675 5.16672 5.20531 5.24843 5.27759 5.46143 5.51341 5.69169 5.72197 5.97213 6.47423 6.50228 6.95404 7.18562 7.24871 7.58227 8.26140 8.49968 9.47307 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011196 B = 0.004838 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.348519 B = 5786.168413 C = 6867.054378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.132 3.868 3 C -0.171 4.171 4 C -0.011 4.011 5 C -0.115 4.115 6 C -0.194 4.194 7 C 0.574 3.426 8 O -0.583 6.583 9 N -0.582 5.582 10 C 0.111 3.889 11 C -0.128 4.128 12 C -0.107 4.107 13 C 0.175 3.825 14 C 0.077 3.923 15 O -0.574 6.574 16 N -0.707 5.707 17 C -0.164 4.164 18 H 0.077 0.923 19 C -0.076 4.076 20 N -0.964 5.964 21 Si 0.932 3.068 22 H -0.291 1.291 23 H -0.306 1.306 24 H -0.295 1.295 25 C 0.115 3.885 26 C 0.160 3.840 27 C -0.091 4.091 28 N -0.512 5.512 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.183 0.817 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.059 0.941 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.040 0.960 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.103 0.897 42 H 0.067 0.933 43 H 0.036 0.964 44 H 0.375 0.625 45 H 0.372 0.628 46 H 0.238 0.762 47 H 0.054 0.946 48 H 0.082 0.918 49 H 0.046 0.954 50 H 0.076 0.924 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.690 18.919 11.258 23.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.005 4.005 3 C -0.190 4.190 4 C -0.019 4.019 5 C -0.171 4.171 6 C -0.199 4.199 7 C 0.362 3.638 8 O -0.463 6.463 9 N -0.312 5.312 10 C -0.011 4.011 11 C -0.166 4.166 12 C -0.145 4.145 13 C 0.084 3.916 14 C -0.003 4.003 15 O -0.380 6.380 16 N -0.346 5.346 17 C -0.297 4.297 18 H 0.095 0.905 19 C -0.266 4.266 20 N -0.619 5.619 21 Si 0.767 3.233 22 H -0.219 1.219 23 H -0.234 1.234 24 H -0.222 1.222 25 C -0.009 4.009 26 C 0.023 3.977 27 C -0.148 4.148 28 N -0.223 5.223 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.201 0.799 33 H 0.097 0.903 34 H 0.134 0.866 35 H 0.078 0.922 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.122 0.878 40 H 0.088 0.912 41 H 0.122 0.878 42 H 0.085 0.915 43 H 0.054 0.946 44 H 0.222 0.778 45 H 0.205 0.795 46 H 0.047 0.953 47 H 0.072 0.928 48 H 0.100 0.900 49 H 0.065 0.935 50 H 0.095 0.905 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.359 18.145 10.376 22.902 hybrid contribution 1.592 -0.933 -1.396 2.314 sum -7.767 17.212 8.980 20.910 Atomic orbital electron populations 1.20855 0.85697 1.04571 1.04517 1.22178 0.98960 0.87776 0.91620 1.22121 0.92713 1.00604 1.03537 1.20661 0.94898 0.93970 0.92374 1.20926 0.99666 0.92912 1.03619 1.20639 0.93672 0.95679 1.09943 1.18213 0.86817 0.75124 0.83684 1.90761 1.70369 1.52145 1.33065 1.47855 1.07104 1.70681 1.05551 1.21971 0.96109 0.99932 0.83093 1.21913 0.96313 0.97633 1.00740 1.21620 0.94887 1.03840 0.94115 1.20412 0.91984 0.86381 0.92834 1.22710 0.93969 0.99139 0.84518 1.86801 1.24390 1.97219 1.29546 1.42494 1.55445 1.20393 1.16243 1.19507 1.17445 1.00488 0.92294 0.90545 1.24983 1.02651 0.99145 0.99866 1.69722 1.40846 1.13220 1.38072 0.85710 0.76971 0.76737 0.83931 1.21891 1.23410 1.22173 1.22003 0.78651 0.98420 1.01838 1.21202 0.89423 0.94362 0.92753 1.20528 1.00105 0.92554 1.01633 1.67402 1.08274 1.31130 1.15537 0.88493 0.91296 0.87601 0.79948 0.90337 0.86617 0.92181 0.87871 0.91102 0.94142 0.87757 0.91238 0.87814 0.91504 0.94576 0.77765 0.79502 0.95262 0.92777 0.89984 0.93508 0.90546 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.53 10.16 71.24 0.72 -0.80 16 2 C 0.13 3.27 6.78 42.57 0.29 3.56 16 3 C -0.17 -3.54 9.43 22.33 0.21 -3.33 16 4 C -0.01 -0.29 5.95 -19.40 -0.12 -0.41 16 5 C -0.12 -2.30 9.69 71.24 0.69 -1.61 16 6 C -0.19 -6.95 3.64 -19.99 -0.07 -7.03 16 7 C 0.57 23.77 4.23 86.79 0.37 24.13 16 8 O -0.58 -30.50 16.52 -3.90 -0.06 -30.56 16 9 N -0.58 -20.23 2.88 -821.57 -2.37 -22.60 16 10 C 0.11 2.84 6.37 86.51 0.55 3.39 16 11 C -0.13 -3.32 5.93 30.82 0.18 -3.14 16 12 C -0.11 -2.73 4.76 30.62 0.15 -2.58 16 13 C 0.18 6.17 0.68 3.67 0.00 6.17 16 14 C 0.08 2.42 6.08 71.98 0.44 2.86 16 15 O -0.57 -21.24 10.11 -148.98 -1.51 -22.74 16 16 N -0.71 -33.53 4.75 -303.04 -1.44 -34.96 16 17 C -0.16 -9.28 8.21 84.03 0.69 -8.59 16 18 H 0.08 4.54 5.28 -2.91 -0.02 4.53 16 19 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 20 N -0.96 -59.87 13.06 21.65 0.28 -59.59 16 21 Si 0.93 51.89 29.55 68.60 2.03 53.91 16 22 H -0.29 -15.68 7.11 99.48 0.71 -14.98 16 23 H -0.31 -17.35 7.11 99.48 0.71 -16.64 16 24 H -0.29 -16.78 7.11 99.48 0.71 -16.08 16 25 C 0.12 4.19 4.84 86.35 0.42 4.61 16 26 C 0.16 6.17 6.69 42.89 0.29 6.46 16 27 C -0.09 -4.09 9.79 71.24 0.70 -3.39 16 28 N -0.51 -17.39 10.17 -171.05 -1.74 -19.13 16 29 H 0.10 1.17 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.11 0.97 8.07 -2.38 -0.02 0.95 16 32 H 0.18 2.02 8.06 -2.92 -0.02 2.00 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 34 H 0.12 1.34 8.10 -2.39 -0.02 1.32 16 35 H 0.06 1.36 7.19 -2.39 -0.02 1.34 16 36 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.07 1.90 6.23 -2.39 -0.01 1.88 16 38 H 0.04 1.41 6.75 -2.39 -0.02 1.40 16 39 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.37 10.01 9.12 -74.06 -0.68 9.34 16 45 H 0.37 19.11 6.43 -92.71 -0.60 18.52 16 46 H 0.24 14.85 8.31 -92.70 -0.77 14.08 16 47 H 0.05 2.57 5.69 -2.39 -0.01 2.56 16 48 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 49 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 50 H 0.08 3.81 7.07 -2.39 -0.02 3.79 16 51 H 0.07 3.22 8.14 -2.38 -0.02 3.20 16 Total: -1.00 -84.43 401.10 0.85 -83.58 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: -0.31 Total: 35.92 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 5.97 Total: 16.18 kcal Atomic # 7 Polarization: -131.02 SS G_CDS: -5.27 Total: -136.29 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -1.57 Total: -53.31 kcal Atomic # 14 Polarization: 51.89 SS G_CDS: 2.03 Total: 53.91 kcal Total: -84.43 0.85 -83.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717254721.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.135 kcal (2) G-P(sol) polarization free energy of solvation -84.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.48 seconds