Wall clock time and date at job start Wed Apr 1 2020 05:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38357 * 119.40559 * 2 1 4 4 C 1.38342 * 119.45121 * 180.25897 * 3 2 1 5 5 C 1.50702 * 120.82047 * 179.75482 * 4 3 2 6 6 C 1.39987 * 118.35202 * 359.47480 * 4 3 2 7 7 C 1.47528 * 120.59278 * 180.23170 * 6 4 3 8 8 O 1.21591 * 119.99616 * 95.14695 * 7 6 4 9 9 N 1.34771 * 120.00067 * 275.13600 * 7 6 4 10 10 C 1.46497 * 120.00173 * 185.36120 * 9 7 6 11 11 H 1.09002 * 109.47025 * 20.21714 * 10 9 7 12 12 C 1.53006 * 109.47100 * 260.22377 * 10 9 7 13 13 N 1.46499 * 109.47222 * 57.33174 * 12 10 9 14 14 C 1.36934 * 119.99843 * 185.18853 * 13 12 10 15 15 H 1.07997 * 120.00473 * 5.73640 * 14 13 12 16 16 C 1.38820 * 119.99938 * 185.73279 * 14 13 12 17 17 N 1.31608 * 119.99984 * 185.08521 * 16 14 13 18 18 Si 1.86803 * 119.99791 * 5.09049 * 16 14 13 19 19 H 1.48498 * 109.47294 * 93.89390 * 18 16 14 20 20 H 1.48495 * 109.46828 * 213.89539 * 18 16 14 21 21 H 1.48497 * 109.47175 * 333.89167 * 18 16 14 22 22 C 1.52997 * 109.47450 * 140.22267 * 10 9 7 23 23 C 1.54266 * 110.03144 * 58.60734 * 22 10 9 24 24 C 1.54893 * 104.19311 * 217.10397 * 23 22 10 25 25 C 1.54895 * 102.74666 * 37.94369 * 24 23 22 26 26 C 1.53876 * 110.03076 * 301.43720 * 22 10 9 27 27 C 1.40279 * 118.80457 * 0.25735 * 6 4 3 28 28 O 1.35430 * 119.79597 * 180.02562 * 27 6 4 29 29 N 1.31881 * 119.40471 * 179.72514 * 2 1 3 30 30 H 1.09004 * 109.47238 * 270.27532 * 1 2 3 31 31 H 1.09004 * 109.47113 * 30.27227 * 1 2 3 32 32 H 1.09005 * 109.47370 * 150.27585 * 1 2 3 33 33 H 1.07999 * 120.27401 * 359.97438 * 3 2 1 34 34 H 1.08997 * 109.47376 * 264.45961 * 5 4 3 35 35 H 1.08997 * 109.46979 * 144.46241 * 5 4 3 36 36 H 1.09001 * 109.47349 * 24.46111 * 5 4 3 37 37 H 0.97001 * 119.99745 * 5.36395 * 9 7 6 38 38 H 1.09002 * 109.47386 * 177.33494 * 12 10 9 39 39 H 1.09000 * 109.46725 * 297.33202 * 12 10 9 40 40 H 0.96999 * 120.00002 * 5.19419 * 13 12 10 41 41 H 0.97000 * 120.00398 * 180.02562 * 17 16 14 42 42 H 1.08999 * 110.01853 * 180.02562 * 22 10 9 43 43 H 1.08997 * 110.48788 * 335.77940 * 23 22 10 44 44 H 1.08997 * 110.48371 * 98.43228 * 23 22 10 45 45 H 1.08995 * 110.75922 * 279.62783 * 24 23 22 46 46 H 1.09000 * 110.75464 * 156.25537 * 24 23 22 47 47 H 1.08999 * 110.48701 * 203.37254 * 25 24 23 48 48 H 1.09003 * 110.59763 * 80.78965 * 25 24 23 49 49 H 1.08994 * 110.03694 * 238.57046 * 26 22 10 50 50 H 1.09001 * 110.03233 * 359.95575 * 26 22 10 51 51 H 0.96690 * 114.00397 * 89.99600 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2064 -0.0054 5 6 4.3408 2.5012 -0.0111 6 6 4.2355 -0.0250 0.0005 7 6 5.7097 -0.0814 0.0002 8 8 6.3139 -0.1938 1.0494 9 7 6.3867 -0.0087 -1.1629 10 6 7.8412 -0.1823 -1.1759 11 1 8.1534 -0.7011 -0.2695 12 6 8.5180 1.1885 -1.2376 13 7 8.0812 2.0004 -0.0990 14 6 8.4740 3.3085 -0.0002 15 1 9.0275 3.7685 -0.8054 16 6 8.1605 4.0434 1.1350 17 7 8.4493 5.3263 1.1889 18 14 7.3291 3.2114 2.5862 19 1 8.3593 2.7693 3.5601 20 1 6.4053 4.1702 3.2437 21 1 6.5618 2.0333 2.1083 22 6 8.2456 -1.0062 -2.4001 23 6 7.7789 -0.3001 -3.6898 24 6 7.3458 -1.4590 -4.6218 25 6 6.6745 -2.4531 -3.6418 26 6 7.5434 -2.3751 -2.3695 27 6 3.4757 -1.2041 0.0062 28 8 4.0991 -2.4064 0.0125 29 7 2.1545 -1.1489 0.0055 30 1 -0.3634 0.0049 1.0277 31 1 -0.3633 0.8876 -0.5181 32 1 -0.3634 -0.8925 -0.5096 33 1 1.6411 2.1376 -0.0004 34 1 4.6079 2.7606 -1.0356 35 1 5.2475 2.3867 0.5828 36 1 3.7247 3.2929 0.4152 37 1 5.9107 0.1588 -1.9913 38 1 9.6000 1.0617 -1.1996 39 1 8.2432 1.6879 -2.1666 40 1 7.5139 1.6114 0.5848 41 1 8.2306 5.8398 1.9822 42 1 9.3270 -1.1413 -2.4183 43 1 6.9348 0.3571 -3.4809 44 1 8.5998 0.2614 -4.1357 45 1 8.2127 -1.9144 -5.1004 46 1 6.6312 -1.1091 -5.3668 47 1 6.6893 -3.4626 -4.0526 48 1 5.6515 -2.1456 -3.4245 49 1 8.2840 -3.1748 -2.3735 50 1 6.9152 -2.4527 -1.4821 51 1 4.2799 -2.7511 0.8976 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754653108.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:54 Heat of formation + Delta-G solvation = -43.089626 kcal Electronic energy + Delta-G solvation = -32907.964372 eV Core-core repulsion = 28807.249086 eV Total energy + Delta-G solvation = -4100.715286 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 17.80 seconds Orbital eigenvalues (eV) -41.04143 -39.73634 -38.02463 -37.44181 -35.20880 -34.25141 -33.54530 -31.94367 -31.32625 -30.06134 -28.74995 -28.31794 -27.54030 -26.44056 -23.81029 -22.95664 -21.90643 -21.48415 -20.79889 -20.10478 -19.32439 -18.50926 -17.76782 -17.71585 -17.12396 -16.16098 -15.75530 -15.56951 -15.18092 -14.50873 -14.43367 -14.31578 -14.19704 -13.76641 -13.66780 -13.34894 -13.21230 -13.07651 -13.03592 -12.93169 -12.54824 -12.48814 -12.21240 -12.07405 -11.93598 -11.85216 -11.63009 -11.50933 -11.10855 -11.05019 -10.78336 -10.68876 -10.62376 -10.50508 -10.44397 -10.12881 -9.88247 -9.58757 -9.51144 -9.37940 -8.91697 -8.85081 -8.69565 -7.14468 -5.73694 -3.07254 0.67817 1.01584 2.74935 3.18636 3.28224 3.43559 3.52043 3.59741 3.64434 4.34857 4.49125 4.53418 4.61006 4.65576 4.69300 4.76021 4.89872 5.11628 5.16121 5.21275 5.30572 5.34736 5.38479 5.44099 5.54191 5.55850 5.57294 5.61660 5.64087 5.71038 5.77418 5.81366 5.83425 5.86119 5.90707 5.93392 6.04109 6.11200 6.15334 6.21915 6.23920 6.30074 6.36837 6.44090 6.49302 6.63557 6.86872 7.29018 7.66387 7.73235 8.07115 8.39258 8.46856 9.30548 10.02533 10.25088 11.44320 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007317 B = 0.005941 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3825.542377 B = 4712.192063 C = 7459.578516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.163 3.837 3 C -0.188 4.188 4 C 0.019 3.981 5 C -0.136 4.136 6 C -0.200 4.200 7 C 0.578 3.422 8 O -0.525 6.525 9 N -0.699 5.699 10 C 0.136 3.864 11 H 0.094 0.906 12 C 0.144 3.856 13 N -0.756 5.756 14 C -0.240 4.240 15 H 0.087 0.913 16 C 0.008 3.992 17 N -0.934 5.934 18 Si 0.863 3.137 19 H -0.287 1.287 20 H -0.294 1.294 21 H -0.254 1.254 22 C -0.097 4.097 23 C -0.120 4.120 24 C -0.125 4.125 25 C -0.121 4.121 26 C -0.119 4.119 27 C 0.353 3.647 28 O -0.476 6.476 29 N -0.510 5.510 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.144 0.856 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.397 0.603 38 H 0.030 0.970 39 H 0.033 0.967 40 H 0.374 0.626 41 H 0.258 0.742 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.060 0.940 50 H 0.069 0.931 51 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.608 -14.757 -8.928 21.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.026 3.974 3 C -0.208 4.208 4 C 0.011 3.989 5 C -0.192 4.192 6 C -0.207 4.207 7 C 0.362 3.638 8 O -0.401 6.401 9 N -0.350 5.350 10 C 0.031 3.969 11 H 0.112 0.888 12 C 0.016 3.984 13 N -0.405 5.405 14 C -0.370 4.370 15 H 0.105 0.895 16 C -0.188 4.188 17 N -0.582 5.582 18 Si 0.693 3.307 19 H -0.214 1.214 20 H -0.220 1.220 21 H -0.179 1.179 22 C -0.116 4.116 23 C -0.158 4.158 24 C -0.163 4.163 25 C -0.159 4.159 26 C -0.157 4.157 27 C 0.173 3.827 28 O -0.284 6.284 29 N -0.230 5.230 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.162 0.838 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.232 0.768 38 H 0.048 0.952 39 H 0.051 0.949 40 H 0.210 0.790 41 H 0.068 0.932 42 H 0.105 0.895 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.079 0.921 50 H 0.088 0.912 51 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -12.479 -15.414 -8.805 21.699 hybrid contribution -0.204 0.345 1.278 1.340 sum -12.683 -15.069 -7.527 21.085 Atomic orbital electron populations 1.20779 0.88266 1.03768 1.03417 1.21133 0.96852 0.87105 0.92332 1.21836 0.93725 0.99610 1.05625 1.20494 0.93680 0.94660 0.90079 1.21149 1.01137 0.92257 1.04642 1.20953 0.95280 0.93997 1.10466 1.17665 0.85781 0.75987 0.84323 1.90847 1.69183 1.49051 1.31044 1.45849 1.08088 1.72052 1.08972 1.21428 0.79263 0.97228 0.98947 0.88773 1.21062 0.96251 0.89011 0.92084 1.42920 1.61141 1.10494 1.25933 1.19040 1.30026 0.85636 1.02325 0.89501 1.24620 1.01007 0.95504 0.97627 1.69705 1.53288 1.05990 1.29252 0.86889 0.80051 0.79306 0.84444 1.21396 1.22039 1.17944 1.22053 1.00842 0.94600 0.94119 1.22447 1.01175 0.97359 0.94808 1.22514 1.00026 0.96283 0.97439 1.22322 0.99117 0.99005 0.95459 1.22167 0.98682 0.96225 0.98580 1.18923 0.86319 0.84251 0.93201 1.84656 1.76742 1.32810 1.34165 1.67012 1.09066 1.30373 1.16545 0.90016 0.90229 0.90252 0.83802 0.89133 0.89019 0.90322 0.76757 0.95204 0.94884 0.79011 0.93227 0.89512 0.91552 0.91078 0.91612 0.91872 0.92156 0.91887 0.92103 0.91220 0.73663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 10.16 36.01 0.37 -0.45 16 2 C 0.16 1.92 6.78 -82.53 -0.56 1.36 16 3 C -0.19 -2.24 9.39 -39.50 -0.37 -2.61 16 4 C 0.02 0.28 5.95 -103.93 -0.62 -0.34 16 5 C -0.14 -2.18 9.61 36.01 0.35 -1.83 16 6 C -0.20 -3.14 5.66 -104.69 -0.59 -3.73 16 7 C 0.58 10.07 4.82 -12.48 -0.06 10.01 16 8 O -0.53 -11.12 14.06 5.29 0.07 -11.04 16 9 N -0.70 -10.61 3.99 -54.85 -0.22 -10.83 16 10 C 0.14 2.11 1.94 -67.93 -0.13 1.98 16 11 H 0.09 1.65 7.22 -51.93 -0.38 1.28 16 12 C 0.14 2.76 5.77 -4.04 -0.02 2.73 16 13 N -0.76 -18.26 5.19 -59.90 -0.31 -18.58 16 14 C -0.24 -6.83 10.47 -15.06 -0.16 -6.99 16 15 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 16 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 17 N -0.93 -29.51 13.97 55.49 0.78 -28.74 16 18 Si 0.86 22.99 27.08 -169.99 -4.60 18.39 16 19 H -0.29 -7.88 7.11 56.52 0.40 -7.48 16 20 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 21 H -0.25 -6.54 4.20 56.52 0.24 -6.30 16 22 C -0.10 -1.14 2.83 -89.50 -0.25 -1.40 16 23 C -0.12 -1.30 5.05 -25.07 -0.13 -1.43 16 24 C -0.13 -1.17 6.91 -24.73 -0.17 -1.34 16 25 C -0.12 -1.20 6.83 -25.07 -0.17 -1.38 16 26 C -0.12 -1.31 6.18 -25.61 -0.16 -1.47 16 27 C 0.35 5.12 7.77 -16.61 -0.13 4.99 16 28 O -0.48 -6.19 13.01 -17.98 -0.23 -6.43 16 29 N -0.51 -7.06 10.28 -9.21 -0.09 -7.16 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.46 8.07 -51.93 -0.42 0.04 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.09 1.86 5.28 -51.93 -0.27 1.59 16 36 H 0.08 1.10 8.07 -51.93 -0.42 0.69 16 37 H 0.40 5.35 6.84 -40.82 -0.28 5.07 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.03 0.62 7.09 -51.93 -0.37 0.25 16 40 H 0.37 9.14 2.89 -40.82 -0.12 9.02 16 41 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.07 0.76 5.98 -51.93 -0.31 0.45 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.07 0.88 7.32 -51.93 -0.38 0.50 16 51 H 0.40 3.82 9.06 45.56 0.41 4.24 16 LS Contribution 399.44 15.07 6.02 6.02 Total: -1.00 -35.61 399.44 -8.83 -44.44 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: -7.33 Total: 15.67 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -2.91 Total: -1.75 kcal Atomic # 7 Polarization: -65.46 SS G_CDS: 0.15 Total: -65.31 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.16 Total: -17.47 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -4.60 Total: 18.39 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.61 -8.83 -44.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754653108.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.353 kcal (2) G-P(sol) polarization free energy of solvation -35.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.80 seconds