Wall clock time and date at job start Wed Apr 1 2020 05:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38357 * 119.40559 * 2 1 4 4 C 1.38342 * 119.45121 * 180.25897 * 3 2 1 5 5 C 1.50702 * 120.82047 * 179.75482 * 4 3 2 6 6 C 1.39987 * 118.35202 * 359.47480 * 4 3 2 7 7 C 1.47528 * 120.59278 * 180.23170 * 6 4 3 8 8 O 1.21591 * 119.99616 * 95.14695 * 7 6 4 9 9 N 1.34771 * 120.00067 * 275.13600 * 7 6 4 10 10 C 1.46497 * 120.00173 * 185.36120 * 9 7 6 11 11 H 1.09002 * 109.47025 * 20.21714 * 10 9 7 12 12 C 1.53006 * 109.47100 * 260.22377 * 10 9 7 13 13 N 1.46499 * 109.47222 * 57.33174 * 12 10 9 14 14 C 1.36934 * 119.99843 * 185.18853 * 13 12 10 15 15 H 1.07997 * 120.00473 * 5.73640 * 14 13 12 16 16 C 1.38820 * 119.99938 * 185.73279 * 14 13 12 17 17 N 1.31608 * 119.99984 * 185.08521 * 16 14 13 18 18 Si 1.86803 * 119.99791 * 5.09049 * 16 14 13 19 19 H 1.48498 * 109.47294 * 93.89390 * 18 16 14 20 20 H 1.48495 * 109.46828 * 213.89539 * 18 16 14 21 21 H 1.48497 * 109.47175 * 333.89167 * 18 16 14 22 22 C 1.52997 * 109.47450 * 140.22267 * 10 9 7 23 23 C 1.54266 * 110.03144 * 58.60734 * 22 10 9 24 24 C 1.54893 * 104.19311 * 217.10397 * 23 22 10 25 25 C 1.54895 * 102.74666 * 37.94369 * 24 23 22 26 26 C 1.53876 * 110.03076 * 301.43720 * 22 10 9 27 27 C 1.40279 * 118.80457 * 0.25735 * 6 4 3 28 28 O 1.35430 * 119.79597 * 180.02562 * 27 6 4 29 29 N 1.31881 * 119.40471 * 179.72514 * 2 1 3 30 30 H 1.09004 * 109.47238 * 270.27532 * 1 2 3 31 31 H 1.09004 * 109.47113 * 30.27227 * 1 2 3 32 32 H 1.09005 * 109.47370 * 150.27585 * 1 2 3 33 33 H 1.07999 * 120.27401 * 359.97438 * 3 2 1 34 34 H 1.08997 * 109.47376 * 264.45961 * 5 4 3 35 35 H 1.08997 * 109.46979 * 144.46241 * 5 4 3 36 36 H 1.09001 * 109.47349 * 24.46111 * 5 4 3 37 37 H 0.97001 * 119.99745 * 5.36395 * 9 7 6 38 38 H 1.09002 * 109.47386 * 177.33494 * 12 10 9 39 39 H 1.09000 * 109.46725 * 297.33202 * 12 10 9 40 40 H 0.96999 * 120.00002 * 5.19419 * 13 12 10 41 41 H 0.97000 * 120.00398 * 180.02562 * 17 16 14 42 42 H 1.08999 * 110.01853 * 180.02562 * 22 10 9 43 43 H 1.08997 * 110.48788 * 335.77940 * 23 22 10 44 44 H 1.08997 * 110.48371 * 98.43228 * 23 22 10 45 45 H 1.08995 * 110.75922 * 279.62783 * 24 23 22 46 46 H 1.09000 * 110.75464 * 156.25537 * 24 23 22 47 47 H 1.08999 * 110.48701 * 203.37254 * 25 24 23 48 48 H 1.09003 * 110.59763 * 80.78965 * 25 24 23 49 49 H 1.08994 * 110.03694 * 238.57046 * 26 22 10 50 50 H 1.09001 * 110.03233 * 359.95575 * 26 22 10 51 51 H 0.96690 * 114.00397 * 89.99600 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2064 -0.0054 5 6 4.3408 2.5012 -0.0111 6 6 4.2355 -0.0250 0.0005 7 6 5.7097 -0.0814 0.0002 8 8 6.3139 -0.1938 1.0494 9 7 6.3867 -0.0087 -1.1629 10 6 7.8412 -0.1823 -1.1759 11 1 8.1534 -0.7011 -0.2695 12 6 8.5180 1.1885 -1.2376 13 7 8.0812 2.0004 -0.0990 14 6 8.4740 3.3085 -0.0002 15 1 9.0275 3.7685 -0.8054 16 6 8.1605 4.0434 1.1350 17 7 8.4493 5.3263 1.1889 18 14 7.3291 3.2114 2.5862 19 1 8.3593 2.7693 3.5601 20 1 6.4053 4.1702 3.2437 21 1 6.5618 2.0333 2.1083 22 6 8.2456 -1.0062 -2.4001 23 6 7.7789 -0.3001 -3.6898 24 6 7.3458 -1.4590 -4.6218 25 6 6.6745 -2.4531 -3.6418 26 6 7.5434 -2.3751 -2.3695 27 6 3.4757 -1.2041 0.0062 28 8 4.0991 -2.4064 0.0125 29 7 2.1545 -1.1489 0.0055 30 1 -0.3634 0.0049 1.0277 31 1 -0.3633 0.8876 -0.5181 32 1 -0.3634 -0.8925 -0.5096 33 1 1.6411 2.1376 -0.0004 34 1 4.6079 2.7606 -1.0356 35 1 5.2475 2.3867 0.5828 36 1 3.7247 3.2929 0.4152 37 1 5.9107 0.1588 -1.9913 38 1 9.6000 1.0617 -1.1996 39 1 8.2432 1.6879 -2.1666 40 1 7.5139 1.6114 0.5848 41 1 8.2306 5.8398 1.9822 42 1 9.3270 -1.1413 -2.4183 43 1 6.9348 0.3571 -3.4809 44 1 8.5998 0.2614 -4.1357 45 1 8.2127 -1.9144 -5.1004 46 1 6.6312 -1.1091 -5.3668 47 1 6.6893 -3.4626 -4.0526 48 1 5.6515 -2.1456 -3.4245 49 1 8.2840 -3.1748 -2.3735 50 1 6.9152 -2.4527 -1.4821 51 1 4.2799 -2.7511 0.8976 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754653108.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:53 Heat of formation + Delta-G solvation = -70.412844 kcal Electronic energy + Delta-G solvation = -32909.149196 eV Core-core repulsion = 28807.249086 eV Total energy + Delta-G solvation = -4101.900110 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.15907 -40.89761 -39.15682 -38.44181 -36.82678 -35.39201 -35.14221 -33.38975 -32.78688 -31.42089 -29.63077 -29.39965 -28.49549 -27.93433 -25.12476 -24.40140 -23.21239 -22.80197 -21.90869 -21.10808 -20.51218 -19.70638 -19.52147 -18.93523 -18.26143 -17.41919 -16.79220 -16.67468 -16.59437 -16.12730 -15.91594 -15.46467 -15.32592 -15.13692 -14.92517 -14.53952 -14.40564 -14.21198 -14.20015 -14.08146 -13.98824 -13.77146 -13.45645 -13.32898 -13.18012 -13.05058 -12.86533 -12.85769 -12.65112 -12.00622 -11.95005 -11.92583 -11.85389 -11.74229 -11.58271 -11.53824 -11.44605 -11.28609 -11.03034 -10.67646 -10.52243 -10.07890 -9.89624 -9.26440 -8.06376 -5.35239 -0.33937 -0.03148 1.26048 1.32583 1.41862 1.48164 2.06206 2.23229 2.42206 2.60919 3.26018 3.36080 3.42336 3.48900 3.62188 3.68284 3.78713 3.93973 3.99913 4.14034 4.20969 4.24391 4.33220 4.46347 4.47274 4.50925 4.57832 4.59879 4.66553 4.75372 4.80336 4.83803 4.85655 4.87267 4.94240 4.98463 5.04983 5.08926 5.11760 5.12724 5.15945 5.29011 5.34988 5.42818 5.47104 5.52048 5.55450 5.76464 6.19202 6.36560 6.40322 6.73763 7.07574 7.11749 7.88765 8.08529 9.15042 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007317 B = 0.005941 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3825.542377 B = 4712.192063 C = 7459.578516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.166 3.834 3 C -0.179 4.179 4 C 0.006 3.994 5 C -0.132 4.132 6 C -0.223 4.223 7 C 0.580 3.420 8 O -0.571 6.571 9 N -0.687 5.687 10 C 0.146 3.854 11 H 0.073 0.927 12 C 0.139 3.861 13 N -0.762 5.762 14 C -0.221 4.221 15 H 0.064 0.936 16 C -0.045 4.045 17 N -0.976 5.976 18 Si 0.919 3.081 19 H -0.299 1.299 20 H -0.290 1.290 21 H -0.245 1.245 22 C -0.089 4.089 23 C -0.121 4.121 24 C -0.116 4.116 25 C -0.118 4.118 26 C -0.115 4.115 27 C 0.350 3.650 28 O -0.482 6.482 29 N -0.522 5.522 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.178 0.822 34 H 0.092 0.908 35 H 0.047 0.953 36 H 0.096 0.904 37 H 0.406 0.594 38 H 0.032 0.968 39 H 0.043 0.957 40 H 0.374 0.626 41 H 0.256 0.744 42 H 0.097 0.903 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.053 0.947 49 H 0.073 0.927 50 H 0.049 0.951 51 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.921 -16.244 -10.359 24.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.028 3.972 3 C -0.198 4.198 4 C -0.002 4.002 5 C -0.188 4.188 6 C -0.230 4.230 7 C 0.365 3.635 8 O -0.450 6.450 9 N -0.338 5.338 10 C 0.041 3.959 11 H 0.092 0.908 12 C 0.012 3.988 13 N -0.410 5.410 14 C -0.352 4.352 15 H 0.082 0.918 16 C -0.237 4.237 17 N -0.627 5.627 18 Si 0.749 3.251 19 H -0.227 1.227 20 H -0.216 1.216 21 H -0.170 1.170 22 C -0.109 4.109 23 C -0.159 4.159 24 C -0.154 4.154 25 C -0.155 4.155 26 C -0.152 4.152 27 C 0.171 3.829 28 O -0.292 6.292 29 N -0.243 5.243 30 H 0.114 0.886 31 H 0.125 0.875 32 H 0.100 0.900 33 H 0.195 0.805 34 H 0.110 0.890 35 H 0.066 0.934 36 H 0.115 0.885 37 H 0.243 0.757 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.210 0.790 41 H 0.066 0.934 42 H 0.115 0.885 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.091 0.909 47 H 0.092 0.908 48 H 0.072 0.928 49 H 0.092 0.908 50 H 0.068 0.932 51 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -14.803 -16.950 -10.289 24.745 hybrid contribution 0.505 0.777 1.633 1.878 sum -14.299 -16.173 -8.656 23.258 Atomic orbital electron populations 1.20932 0.85080 1.05235 1.04726 1.21870 0.98781 0.86389 0.90158 1.22160 0.92457 1.01219 1.03984 1.20482 0.94916 0.93480 0.91298 1.21046 0.99809 0.93885 1.04066 1.20877 0.94105 0.95122 1.12856 1.17991 0.86699 0.74843 0.83933 1.90804 1.70330 1.51313 1.32562 1.45791 1.07924 1.71071 1.09005 1.21279 0.79220 0.95334 1.00089 0.90847 1.21297 0.96647 0.90368 0.90511 1.43022 1.61052 1.09505 1.27407 1.19057 1.27890 0.87185 1.01064 0.91813 1.25139 1.02686 0.95950 0.99930 1.69825 1.55567 1.07320 1.29961 0.85993 0.78956 0.78757 0.81423 1.22666 1.21624 1.17030 1.22034 1.01575 0.94584 0.92683 1.22457 1.01007 0.97884 0.94554 1.22477 1.00634 0.95206 0.97061 1.22293 0.98314 0.99978 0.94946 1.22118 0.98805 0.95855 0.98455 1.18961 0.86664 0.84195 0.93091 1.84607 1.76779 1.32385 1.35405 1.67153 1.08501 1.31499 1.17101 0.88568 0.87535 0.90042 0.80491 0.88977 0.93387 0.88478 0.75653 0.95033 0.93923 0.78989 0.93442 0.88465 0.92374 0.90692 0.90370 0.90889 0.90839 0.92823 0.90803 0.93179 0.72171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.20 10.16 71.24 0.72 -0.48 16 2 C 0.17 3.42 6.78 42.58 0.29 3.71 16 3 C -0.18 -3.77 9.39 22.32 0.21 -3.56 16 4 C 0.01 0.17 5.95 -19.41 -0.12 0.06 16 5 C -0.13 -4.17 9.61 71.24 0.68 -3.49 16 6 C -0.22 -6.92 5.66 -19.91 -0.11 -7.04 16 7 C 0.58 20.50 4.82 86.69 0.42 20.92 16 8 O -0.57 -24.83 14.06 -4.00 -0.06 -24.88 16 9 N -0.69 -21.01 3.99 -445.71 -1.78 -22.79 16 10 C 0.15 4.54 1.94 44.99 0.09 4.63 16 11 H 0.07 2.64 7.22 -2.39 -0.02 2.62 16 12 C 0.14 5.33 5.77 86.38 0.50 5.83 16 13 N -0.76 -37.40 5.19 -343.44 -1.78 -39.19 16 14 C -0.22 -12.82 10.47 84.04 0.88 -11.95 16 15 H 0.06 3.96 8.06 -2.91 -0.02 3.94 16 16 C -0.04 -2.72 5.50 84.87 0.47 -2.26 16 17 N -0.98 -63.12 13.97 21.65 0.30 -62.82 16 18 Si 0.92 49.10 27.08 68.60 1.86 50.96 16 19 H -0.30 -16.41 7.11 99.48 0.71 -15.70 16 20 H -0.29 -15.14 7.11 99.48 0.71 -14.43 16 21 H -0.25 -12.73 4.20 99.48 0.42 -12.31 16 22 C -0.09 -2.01 2.83 -10.07 -0.03 -2.04 16 23 C -0.12 -2.40 5.05 31.67 0.16 -2.24 16 24 C -0.12 -1.85 6.91 31.89 0.22 -1.63 16 25 C -0.12 -2.08 6.83 31.67 0.22 -1.86 16 26 C -0.11 -2.36 6.18 31.32 0.19 -2.16 16 27 C 0.35 9.91 7.77 85.13 0.66 10.57 16 28 O -0.48 -12.38 13.01 -87.26 -1.14 -13.51 16 29 N -0.52 -13.52 10.28 -296.05 -3.04 -16.57 16 30 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.11 0.71 8.07 -2.39 -0.02 0.69 16 32 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.05 1.96 5.28 -2.39 -0.01 1.95 16 36 H 0.10 2.61 8.07 -2.39 -0.02 2.59 16 37 H 0.41 10.86 6.84 -92.71 -0.63 10.22 16 38 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 39 H 0.04 1.57 7.09 -2.39 -0.02 1.56 16 40 H 0.37 18.63 2.89 -92.71 -0.27 18.36 16 41 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 42 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.06 1.25 5.98 -2.39 -0.01 1.23 16 44 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.05 1.24 7.32 -2.39 -0.02 1.23 16 51 H 0.42 7.88 9.06 -74.06 -0.67 7.21 16 Total: -1.00 -79.17 399.44 -1.08 -80.25 By element: Atomic # 1 Polarization: 42.43 SS G_CDS: -0.89 Total: 41.54 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 5.45 Total: 7.02 kcal Atomic # 7 Polarization: -135.06 SS G_CDS: -6.30 Total: -141.36 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -1.19 Total: -38.40 kcal Atomic # 14 Polarization: 49.10 SS G_CDS: 1.86 Total: 50.96 kcal Total: -79.17 -1.08 -80.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754653108.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.833 kcal (2) G-P(sol) polarization free energy of solvation -79.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds