Wall clock time and date at job start Wed Apr 1 2020 05:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40196 * 120.37008 * 2 1 4 4 C 1.35346 * 119.95278 * 179.97438 * 3 2 1 5 5 N 1.35771 * 120.70123 * 359.97438 * 4 3 2 6 6 C 1.46494 * 119.62449 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47232 * 90.00092 * 6 5 4 8 8 O 1.21281 * 120.00015 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00125 * 179.97438 * 7 6 5 10 10 C 1.46494 * 120.00127 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47305 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.52561 * 60.07893 * 11 10 9 13 13 C 1.53075 * 109.62262 * 180.10755 * 11 10 9 14 14 C 1.53046 * 109.65675 * 181.17009 * 13 11 10 15 15 C 1.53190 * 109.30734 * 298.69639 * 14 13 11 16 16 N 1.46923 * 108.77902 * 54.64056 * 15 14 13 17 17 C 1.36937 * 120.63503 * 126.41148 * 16 15 14 18 18 H 1.08000 * 119.99761 * 331.80695 * 17 16 15 19 19 C 1.38806 * 120.00219 * 151.80946 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.07619 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.07294 * 19 17 16 22 22 H 1.48506 * 109.46812 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47258 * 119.99807 * 21 19 17 24 24 H 1.48499 * 109.47344 * 240.00342 * 21 19 17 25 25 C 1.46930 * 118.73237 * 306.38492 * 16 15 14 26 26 C 1.34658 * 120.74622 * 0.29809 * 5 4 3 27 27 O 1.22065 * 119.98262 * 179.70457 * 26 5 4 28 28 C 1.36404 * 120.36980 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47517 * 89.99351 * 1 2 3 30 30 H 1.09001 * 109.46898 * 209.99947 * 1 2 3 31 31 H 1.08997 * 109.47068 * 329.99754 * 1 2 3 32 32 H 1.08004 * 120.02685 * 0.02562 * 3 2 1 33 33 H 1.07997 * 119.65138 * 180.02562 * 4 3 2 34 34 H 1.08998 * 109.47287 * 330.00011 * 6 5 4 35 35 H 1.09000 * 109.46790 * 210.00309 * 6 5 4 36 36 H 0.97006 * 119.99838 * 0.02562 * 9 7 6 37 37 H 1.09002 * 109.47684 * 59.99742 * 10 9 7 38 38 H 1.09000 * 109.47246 * 299.99699 * 10 9 7 39 39 H 1.09003 * 109.46762 * 299.92027 * 12 11 10 40 40 H 1.09003 * 109.47379 * 59.92003 * 12 11 10 41 41 H 1.09001 * 109.47504 * 179.97438 * 12 11 10 42 42 H 1.08994 * 109.35008 * 61.13920 * 13 11 10 43 43 H 1.09001 * 109.44851 * 301.25780 * 13 11 10 44 44 H 1.09004 * 109.49382 * 178.74781 * 14 13 11 45 45 H 1.08995 * 109.49828 * 58.64674 * 14 13 11 46 46 H 1.09001 * 109.58751 * 294.84575 * 15 14 13 47 47 H 1.09008 * 109.70016 * 174.49273 * 15 14 13 48 48 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 49 49 H 1.09005 * 109.58138 * 173.39727 * 25 16 15 50 50 H 1.08998 * 109.58912 * 293.67970 * 25 16 15 51 51 H 1.07998 * 120.34429 * 0.04083 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1997 0.0005 5 7 4.2539 0.0273 0.0016 6 6 5.7187 0.0441 0.0027 7 6 6.2199 0.0505 1.4239 8 8 5.4312 0.0423 2.3451 9 7 7.5447 0.0654 1.6711 10 6 8.0320 0.0710 3.0527 11 6 9.5619 0.0888 3.0539 12 6 10.0593 1.3444 2.3350 13 6 10.0748 0.0920 4.4961 14 6 11.6046 0.1392 4.4984 15 6 12.1508 -1.1067 3.7939 16 7 11.5518 -1.1938 2.4551 17 6 12.3425 -1.3087 1.3430 18 1 13.3414 -0.8979 1.3459 19 6 11.8604 -1.9531 0.2121 20 7 10.8041 -2.7336 0.2994 21 14 12.7104 -1.7125 -1.4338 22 1 13.8655 -0.7945 -1.2648 23 1 13.1906 -3.0236 -1.9393 24 1 11.7514 -1.1283 -2.4055 25 6 10.0881 -1.1559 2.3323 26 6 3.6017 -1.1508 -0.0039 27 8 4.2312 -2.1966 -0.0083 28 6 2.1966 -1.1769 0.0005 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6822 2.1486 0.0004 33 1 4.1103 2.1344 0.0009 34 1 6.0722 0.9380 -0.5112 35 1 6.0926 -0.8418 -0.5105 36 1 8.1756 0.0723 0.9343 37 1 7.6782 -0.8228 3.5665 38 1 7.6584 0.9570 3.5661 39 1 9.6984 1.3412 1.3064 40 1 9.6846 2.2297 2.8487 41 1 11.1493 1.3564 2.3367 42 1 9.7387 -0.8136 5.0010 43 1 9.6838 0.9652 5.0184 44 1 11.9662 0.1638 5.5264 45 1 11.9418 1.0320 3.9720 46 1 11.8908 -1.9953 4.3691 47 1 13.2347 -1.0331 3.7051 48 1 10.4674 -3.1842 -0.4908 49 1 9.8109 -1.1123 1.2790 50 1 9.6601 -2.0497 2.7861 51 1 1.6683 -2.1188 0.0003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754730246.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:29 Heat of formation + Delta-G solvation = -21.868074 kcal Electronic energy + Delta-G solvation = -31517.144262 eV Core-core repulsion = 27417.349211 eV Total energy + Delta-G solvation = -4099.795051 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.53052 -39.58523 -38.29005 -37.04960 -35.41233 -34.76567 -33.25704 -31.58883 -30.57375 -29.92223 -29.51017 -27.45971 -26.46323 -25.42115 -24.99893 -23.80812 -22.30200 -21.76809 -20.68958 -20.30322 -18.23229 -17.63849 -17.50904 -17.32424 -16.66235 -16.11355 -15.54356 -15.41055 -15.15553 -14.77537 -14.34414 -14.17992 -14.10217 -13.91564 -13.77734 -13.63139 -13.36397 -13.15545 -12.98746 -12.80427 -12.56728 -12.37369 -12.24999 -12.06997 -11.86959 -11.78054 -11.61450 -11.35077 -11.00316 -10.89572 -10.70258 -10.41717 -10.27243 -10.22411 -10.11394 -9.96146 -9.86311 -9.70410 -9.49503 -9.40619 -8.80954 -8.52228 -8.03833 -6.69252 -5.82721 -3.25803 0.72336 1.80951 2.40963 2.67532 3.31128 3.32295 3.41155 3.42561 3.69425 4.34148 4.44458 4.46110 4.59899 4.77471 4.85222 5.01406 5.07121 5.09979 5.25261 5.27485 5.28482 5.38013 5.40128 5.47963 5.55523 5.58168 5.74164 5.81027 5.91112 5.95884 6.00105 6.03203 6.12730 6.22338 6.23264 6.36595 6.40223 6.40959 6.50496 6.56034 6.68846 6.79903 6.84261 6.92821 7.00331 7.01550 7.25229 7.54650 7.65936 7.75389 8.04351 8.30657 8.39819 9.16656 9.79855 10.37673 11.24955 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013311 B = 0.002827 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.995424 B = 9903.520446 C =11192.282448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.012 3.988 3 C -0.234 4.234 4 C 0.148 3.852 5 N -0.480 5.480 6 C 0.067 3.933 7 C 0.501 3.499 8 O -0.539 6.539 9 N -0.710 5.710 10 C 0.138 3.862 11 C -0.103 4.103 12 C -0.126 4.126 13 C -0.095 4.095 14 C -0.134 4.134 15 C 0.143 3.857 16 N -0.589 5.589 17 C -0.250 4.250 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.900 5.900 21 Si 0.898 3.102 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.185 3.815 26 C 0.520 3.480 27 O -0.545 6.545 28 C -0.247 4.247 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.143 0.857 33 H 0.160 0.840 34 H 0.121 0.879 35 H 0.133 0.867 36 H 0.408 0.592 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.044 0.956 40 H 0.036 0.964 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.047 0.953 44 H 0.049 0.951 45 H 0.062 0.938 46 H 0.016 0.984 47 H 0.052 0.948 48 H 0.254 0.746 49 H 0.088 0.912 50 H 0.018 0.982 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.295 12.463 -0.318 19.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.009 3.991 3 C -0.258 4.258 4 C 0.020 3.980 5 N -0.190 5.190 6 C -0.058 4.058 7 C 0.285 3.715 8 O -0.416 6.416 9 N -0.362 5.362 10 C 0.014 3.986 11 C -0.105 4.105 12 C -0.183 4.183 13 C -0.133 4.133 14 C -0.174 4.174 15 C 0.016 3.984 16 N -0.311 5.311 17 C -0.379 4.379 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.544 5.544 21 Si 0.728 3.272 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.216 1.216 25 C 0.058 3.942 26 C 0.322 3.678 27 O -0.426 6.426 28 C -0.268 4.268 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.161 0.839 33 H 0.177 0.823 34 H 0.139 0.861 35 H 0.151 0.849 36 H 0.244 0.756 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.034 0.966 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.106 0.894 50 H 0.036 0.964 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.447 11.644 0.211 19.345 hybrid contribution 0.718 0.072 -1.157 1.364 sum -14.729 11.716 -0.946 18.844 Atomic orbital electron populations 1.20909 0.90487 1.03470 1.02931 1.20173 0.96650 0.92695 0.89615 1.20468 0.92322 0.98812 1.14164 1.21880 0.93590 0.89544 0.92953 1.45054 1.07306 1.07245 1.59413 1.21843 0.79469 1.07614 0.96890 1.20535 0.83145 0.77003 0.90841 1.90717 1.55342 1.49803 1.45758 1.45977 1.06228 1.73764 1.10276 1.21392 0.94292 1.01310 0.81583 1.21546 0.91677 1.00077 0.97178 1.21725 1.02790 0.95087 0.98683 1.21349 0.96330 1.00533 0.95119 1.22038 0.95246 1.00852 0.99215 1.20933 0.96438 0.93738 0.87256 1.43986 1.01410 1.84953 1.00711 1.19195 0.98236 1.29771 0.90730 0.91704 1.25043 0.98620 0.96729 0.99230 1.70043 1.26056 1.30083 1.28244 0.86295 0.78979 0.77534 0.84414 1.20328 1.21761 1.21593 1.20793 0.83362 0.90142 0.99887 1.17111 0.89352 0.82535 0.78832 1.91003 1.69047 1.30174 1.52397 1.21917 0.92279 0.99516 1.13119 0.90229 0.90882 0.90865 0.83881 0.82280 0.86142 0.84899 0.75587 0.91777 0.92232 0.93722 0.94539 0.90891 0.92567 0.93416 0.93185 0.91956 0.96589 0.92926 0.93608 0.89412 0.96386 0.83639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 10.03 36.00 0.36 -0.40 16 2 C 0.01 0.12 5.89 -104.55 -0.62 -0.50 16 3 C -0.23 -2.00 9.71 -39.88 -0.39 -2.38 16 4 C 0.15 1.39 10.28 -16.84 -0.17 1.22 16 5 N -0.48 -6.28 2.07 -121.07 -0.25 -6.53 16 6 C 0.07 0.84 5.82 -5.20 -0.03 0.81 16 7 C 0.50 7.91 7.90 -10.99 -0.09 7.83 16 8 O -0.54 -10.37 16.43 5.56 0.09 -10.28 16 9 N -0.71 -11.01 5.00 -60.30 -0.30 -11.32 16 10 C 0.14 2.26 4.58 -4.04 -0.02 2.24 16 11 C -0.10 -1.76 0.53 -154.37 -0.08 -1.84 16 12 C -0.13 -2.02 7.82 37.16 0.29 -1.73 16 13 C -0.10 -1.53 4.71 -26.67 -0.13 -1.66 16 14 C -0.13 -2.21 5.74 -26.61 -0.15 -2.36 16 15 C 0.14 2.88 6.52 -3.71 -0.02 2.86 16 16 N -0.59 -13.83 2.44 -172.32 -0.42 -14.25 16 17 C -0.25 -6.47 9.58 -15.06 -0.14 -6.61 16 18 H 0.07 1.67 7.89 -52.49 -0.41 1.26 16 19 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 20 N -0.90 -25.03 11.20 55.49 0.62 -24.41 16 21 Si 0.90 20.77 29.59 -169.99 -5.03 15.74 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.18 4.06 3.71 -3.71 -0.01 4.05 16 26 C 0.52 8.37 7.40 -15.45 -0.11 8.26 16 27 O -0.54 -11.13 16.64 4.86 0.08 -11.04 16 28 C -0.25 -3.18 9.65 -39.38 -0.38 -3.56 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 31 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 32 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 33 H 0.16 0.93 8.04 -52.49 -0.42 0.51 16 34 H 0.12 0.93 8.01 -51.93 -0.42 0.52 16 35 H 0.13 1.82 7.38 -51.93 -0.38 1.43 16 36 H 0.41 6.11 6.22 -40.82 -0.25 5.85 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.04 0.70 6.87 -51.93 -0.36 0.34 16 40 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 1.31 5.98 -51.93 -0.31 1.00 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.06 1.03 6.34 -51.93 -0.33 0.70 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.05 1.04 7.93 -51.92 -0.41 0.63 16 48 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 49 H 0.09 2.09 4.96 -51.93 -0.26 1.83 16 50 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 402.97 15.07 6.07 6.07 Total: -1.00 -34.81 402.97 -9.10 -43.91 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -8.18 Total: 5.92 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -1.78 Total: 6.19 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.35 Total: -56.51 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: 0.17 Total: -21.33 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.81 -9.10 -43.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754730246.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.042 kcal (2) G-P(sol) polarization free energy of solvation -34.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds