Wall clock time and date at job start Wed Apr 1 2020 05:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40196 * 120.37008 * 2 1 4 4 C 1.35346 * 119.95278 * 179.97438 * 3 2 1 5 5 N 1.35771 * 120.70123 * 359.97438 * 4 3 2 6 6 C 1.46494 * 119.62449 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47232 * 90.00092 * 6 5 4 8 8 O 1.21281 * 120.00015 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00125 * 179.97438 * 7 6 5 10 10 C 1.46494 * 120.00127 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47305 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.52561 * 60.07893 * 11 10 9 13 13 C 1.53075 * 109.62262 * 180.10755 * 11 10 9 14 14 C 1.53046 * 109.65675 * 181.17009 * 13 11 10 15 15 C 1.53190 * 109.30734 * 298.69639 * 14 13 11 16 16 N 1.46923 * 108.77902 * 54.64056 * 15 14 13 17 17 C 1.36937 * 120.63503 * 126.41148 * 16 15 14 18 18 H 1.08000 * 119.99761 * 331.80695 * 17 16 15 19 19 C 1.38806 * 120.00219 * 151.80946 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.07619 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.07294 * 19 17 16 22 22 H 1.48506 * 109.46812 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47258 * 119.99807 * 21 19 17 24 24 H 1.48499 * 109.47344 * 240.00342 * 21 19 17 25 25 C 1.46930 * 118.73237 * 306.38492 * 16 15 14 26 26 C 1.34658 * 120.74622 * 0.29809 * 5 4 3 27 27 O 1.22065 * 119.98262 * 179.70457 * 26 5 4 28 28 C 1.36404 * 120.36980 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47517 * 89.99351 * 1 2 3 30 30 H 1.09001 * 109.46898 * 209.99947 * 1 2 3 31 31 H 1.08997 * 109.47068 * 329.99754 * 1 2 3 32 32 H 1.08004 * 120.02685 * 0.02562 * 3 2 1 33 33 H 1.07997 * 119.65138 * 180.02562 * 4 3 2 34 34 H 1.08998 * 109.47287 * 330.00011 * 6 5 4 35 35 H 1.09000 * 109.46790 * 210.00309 * 6 5 4 36 36 H 0.97006 * 119.99838 * 0.02562 * 9 7 6 37 37 H 1.09002 * 109.47684 * 59.99742 * 10 9 7 38 38 H 1.09000 * 109.47246 * 299.99699 * 10 9 7 39 39 H 1.09003 * 109.46762 * 299.92027 * 12 11 10 40 40 H 1.09003 * 109.47379 * 59.92003 * 12 11 10 41 41 H 1.09001 * 109.47504 * 179.97438 * 12 11 10 42 42 H 1.08994 * 109.35008 * 61.13920 * 13 11 10 43 43 H 1.09001 * 109.44851 * 301.25780 * 13 11 10 44 44 H 1.09004 * 109.49382 * 178.74781 * 14 13 11 45 45 H 1.08995 * 109.49828 * 58.64674 * 14 13 11 46 46 H 1.09001 * 109.58751 * 294.84575 * 15 14 13 47 47 H 1.09008 * 109.70016 * 174.49273 * 15 14 13 48 48 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 49 49 H 1.09005 * 109.58138 * 173.39727 * 25 16 15 50 50 H 1.08998 * 109.58912 * 293.67970 * 25 16 15 51 51 H 1.07998 * 120.34429 * 0.04083 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1997 0.0005 5 7 4.2539 0.0273 0.0016 6 6 5.7187 0.0441 0.0027 7 6 6.2199 0.0505 1.4239 8 8 5.4312 0.0423 2.3451 9 7 7.5447 0.0654 1.6711 10 6 8.0320 0.0710 3.0527 11 6 9.5619 0.0888 3.0539 12 6 10.0593 1.3444 2.3350 13 6 10.0748 0.0920 4.4961 14 6 11.6046 0.1392 4.4984 15 6 12.1508 -1.1067 3.7939 16 7 11.5518 -1.1938 2.4551 17 6 12.3425 -1.3087 1.3430 18 1 13.3414 -0.8979 1.3459 19 6 11.8604 -1.9531 0.2121 20 7 10.8041 -2.7336 0.2994 21 14 12.7104 -1.7125 -1.4338 22 1 13.8655 -0.7945 -1.2648 23 1 13.1906 -3.0236 -1.9393 24 1 11.7514 -1.1283 -2.4055 25 6 10.0881 -1.1559 2.3323 26 6 3.6017 -1.1508 -0.0039 27 8 4.2312 -2.1966 -0.0083 28 6 2.1966 -1.1769 0.0005 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6822 2.1486 0.0004 33 1 4.1103 2.1344 0.0009 34 1 6.0722 0.9380 -0.5112 35 1 6.0926 -0.8418 -0.5105 36 1 8.1756 0.0723 0.9343 37 1 7.6782 -0.8228 3.5665 38 1 7.6584 0.9570 3.5661 39 1 9.6984 1.3412 1.3064 40 1 9.6846 2.2297 2.8487 41 1 11.1493 1.3564 2.3367 42 1 9.7387 -0.8136 5.0010 43 1 9.6838 0.9652 5.0184 44 1 11.9662 0.1638 5.5264 45 1 11.9418 1.0320 3.9720 46 1 11.8908 -1.9953 4.3691 47 1 13.2347 -1.0331 3.7051 48 1 10.4674 -3.1842 -0.4908 49 1 9.8109 -1.1123 1.2790 50 1 9.6601 -2.0497 2.7861 51 1 1.6683 -2.1188 0.0003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754730246.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:28 Heat of formation + Delta-G solvation = -43.997831 kcal Electronic energy + Delta-G solvation = -31518.103880 eV Core-core repulsion = 27417.349211 eV Total energy + Delta-G solvation = -4100.754669 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.53872 -40.92206 -39.73863 -38.13080 -36.50891 -36.12272 -34.93702 -33.11266 -31.73245 -31.34062 -30.47991 -28.44224 -27.86808 -27.21857 -26.34348 -24.66220 -23.93846 -22.80407 -22.12794 -21.58125 -19.71237 -18.69327 -18.55982 -18.52831 -18.39982 -17.07565 -16.91658 -16.72812 -16.45688 -16.26318 -15.72447 -15.44062 -15.25646 -15.16537 -15.03316 -14.93161 -14.65741 -14.39215 -14.16152 -13.97863 -13.79954 -13.57293 -13.36571 -13.15402 -13.01015 -12.98218 -12.87636 -12.73269 -12.59040 -12.46464 -12.27620 -12.11175 -11.85012 -11.73332 -11.41854 -11.40665 -11.16577 -11.08429 -10.97920 -10.58524 -10.52894 -10.14406 -9.00074 -8.62944 -7.83542 -5.29695 -0.12244 0.90997 1.39703 1.46033 1.46979 1.50270 1.59572 2.19010 2.52957 2.69504 3.28869 3.53845 3.59677 3.67349 3.73576 3.86335 3.92991 4.01902 4.03562 4.06198 4.15651 4.32863 4.34799 4.39428 4.50303 4.54201 4.71318 4.73465 4.78843 4.79331 4.84125 4.88946 4.98723 5.04860 5.09730 5.11732 5.17108 5.24175 5.26356 5.30741 5.40147 5.45555 5.47898 5.49825 5.63468 5.66995 5.72656 5.78360 6.05541 6.38193 6.41081 6.95917 7.05014 7.17636 7.88784 8.41814 9.21385 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013311 B = 0.002827 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.995424 B = 9903.520446 C =11192.282448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.035 3.965 3 C -0.228 4.228 4 C 0.139 3.861 5 N -0.482 5.482 6 C 0.070 3.930 7 C 0.500 3.500 8 O -0.576 6.576 9 N -0.707 5.707 10 C 0.145 3.855 11 C -0.089 4.089 12 C -0.118 4.118 13 C -0.096 4.096 14 C -0.122 4.122 15 C 0.135 3.865 16 N -0.604 5.604 17 C -0.252 4.252 18 H 0.066 0.934 19 C -0.047 4.047 20 N -0.933 5.933 21 Si 0.960 3.040 22 H -0.267 1.267 23 H -0.302 1.302 24 H -0.284 1.284 25 C 0.195 3.805 26 C 0.497 3.503 27 O -0.617 6.617 28 C -0.293 4.293 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.188 0.812 33 H 0.205 0.795 34 H 0.177 0.823 35 H 0.113 0.887 36 H 0.410 0.590 37 H 0.037 0.963 38 H 0.081 0.919 39 H 0.045 0.955 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.044 0.956 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.002 0.998 47 H 0.053 0.947 48 H 0.247 0.753 49 H 0.066 0.934 50 H -0.028 1.028 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.215 17.166 -0.346 23.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.031 3.969 3 C -0.250 4.250 4 C 0.013 3.987 5 N -0.191 5.191 6 C -0.055 4.055 7 C 0.286 3.714 8 O -0.456 6.456 9 N -0.359 5.359 10 C 0.020 3.980 11 C -0.091 4.091 12 C -0.175 4.175 13 C -0.134 4.134 14 C -0.160 4.160 15 C 0.009 3.991 16 N -0.326 5.326 17 C -0.382 4.382 18 H 0.084 0.916 19 C -0.242 4.242 20 N -0.580 5.580 21 Si 0.789 3.211 22 H -0.191 1.191 23 H -0.230 1.230 24 H -0.211 1.211 25 C 0.069 3.931 26 C 0.303 3.697 27 O -0.505 6.505 28 C -0.315 4.315 29 H 0.117 0.883 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.205 0.795 33 H 0.221 0.779 34 H 0.194 0.806 35 H 0.131 0.869 36 H 0.248 0.752 37 H 0.055 0.945 38 H 0.099 0.901 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.020 0.980 47 H 0.071 0.929 48 H 0.056 0.944 49 H 0.085 0.915 50 H -0.010 1.010 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.363 16.421 0.195 23.182 hybrid contribution 0.969 -1.354 -1.083 1.986 sum -15.394 15.066 -0.888 21.558 Atomic orbital electron populations 1.21038 0.87698 1.04639 1.04408 1.20668 0.98646 0.91944 0.85630 1.21085 0.92211 0.99866 1.11869 1.22762 0.94551 0.89544 0.91840 1.45079 1.07571 1.07720 1.58685 1.21956 0.79516 1.09328 0.94729 1.21072 0.82684 0.75766 0.91887 1.90690 1.56111 1.51561 1.47246 1.45976 1.06457 1.73428 1.10065 1.21276 0.93607 1.00953 0.82125 1.21333 0.91975 0.98124 0.97714 1.21643 1.01637 0.95202 0.99027 1.21389 0.96185 1.01574 0.94236 1.21907 0.95217 0.98567 1.00337 1.21117 0.96622 0.95332 0.85996 1.44245 1.01841 1.85034 1.01524 1.19477 0.98442 1.28743 0.91577 0.91622 1.25716 0.99463 0.96839 1.02210 1.70218 1.27769 1.31496 1.28500 0.85321 0.78327 0.76843 0.80626 1.19086 1.22989 1.21085 1.20560 0.82809 0.90867 0.98837 1.17651 0.90531 0.82668 0.78829 1.90941 1.70376 1.32561 1.56614 1.21866 0.91179 1.01005 1.17436 0.88321 0.91012 0.88423 0.79507 0.77853 0.80584 0.86852 0.75250 0.94466 0.90108 0.93611 0.91392 0.92528 0.93699 0.89994 0.90257 0.91265 0.98015 0.92882 0.94378 0.91541 1.00965 0.84353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 10.03 71.23 0.71 -0.45 16 2 C 0.04 0.62 5.89 -19.82 -0.12 0.50 16 3 C -0.23 -3.01 9.71 22.08 0.21 -2.80 16 4 C 0.14 2.18 10.28 83.42 0.86 3.04 16 5 N -0.48 -12.44 2.07 -655.08 -1.36 -13.80 16 6 C 0.07 1.72 5.82 85.63 0.50 2.22 16 7 C 0.50 15.87 7.90 87.66 0.69 16.56 16 8 O -0.58 -22.42 16.43 -3.03 -0.05 -22.47 16 9 N -0.71 -22.02 5.00 -463.07 -2.31 -24.33 16 10 C 0.14 4.70 4.58 86.38 0.40 5.09 16 11 C -0.09 -3.01 0.53 -52.09 -0.03 -3.04 16 12 C -0.12 -3.51 7.82 71.98 0.56 -2.95 16 13 C -0.10 -2.90 4.71 30.63 0.14 -2.76 16 14 C -0.12 -3.73 5.74 30.67 0.18 -3.56 16 15 C 0.13 5.45 6.52 86.36 0.56 6.01 16 16 N -0.60 -28.95 2.44 -699.09 -1.71 -30.66 16 17 C -0.25 -13.24 9.58 84.03 0.81 -12.43 16 18 H 0.07 3.38 7.89 -2.91 -0.02 3.36 16 19 C -0.05 -2.53 4.92 84.86 0.42 -2.11 16 20 N -0.93 -54.19 11.20 21.65 0.24 -53.94 16 21 Si 0.96 43.34 29.59 68.60 2.03 45.37 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 23 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 25 C 0.20 8.94 3.71 86.36 0.32 9.26 16 26 C 0.50 17.09 7.40 84.82 0.63 17.72 16 27 O -0.62 -27.86 16.64 -5.53 -0.09 -27.96 16 28 C -0.29 -7.95 9.65 22.40 0.22 -7.73 16 29 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 31 H 0.10 0.52 8.10 -2.39 -0.02 0.50 16 32 H 0.19 0.86 8.06 -2.91 -0.02 0.84 16 33 H 0.20 1.28 8.04 -2.91 -0.02 1.26 16 34 H 0.18 2.21 8.01 -2.39 -0.02 2.19 16 35 H 0.11 3.32 7.38 -2.39 -0.02 3.30 16 36 H 0.41 12.40 6.22 -92.70 -0.58 11.82 16 37 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.04 1.34 6.87 -2.39 -0.02 1.32 16 40 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.06 1.90 5.98 -2.39 -0.01 1.88 16 42 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.07 2.08 6.34 -2.39 -0.02 2.06 16 46 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 47 H 0.05 2.09 7.93 -2.38 -0.02 2.08 16 48 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 49 H 0.07 3.31 4.96 -2.38 -0.01 3.30 16 50 H -0.03 -1.49 8.14 -2.39 -0.02 -1.51 16 51 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -83.77 402.97 4.16 -79.60 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.35 Total: 25.61 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: 7.06 Total: 22.58 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -5.14 Total: -122.73 kcal Atomic # 8 Polarization: -50.29 SS G_CDS: -0.14 Total: -50.43 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -83.77 4.16 -79.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754730246.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.606 kcal (2) G-P(sol) polarization free energy of solvation -83.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds