Wall clock time and date at job start Wed Apr 1 2020 07:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30860 * 125.89092 * 2 1 4 4 N 1.40066 * 108.30581 * 180.29670 * 3 2 1 5 5 C 1.46503 * 126.01972 * 179.76075 * 4 3 2 6 6 C 1.50703 * 109.46758 * 269.95482 * 5 4 3 7 7 H 1.08004 * 119.99930 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00087 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00380 * 180.02562 * 8 6 5 10 10 Si 1.86808 * 119.99980 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47324 * 89.99646 * 10 8 6 12 12 H 1.48503 * 109.47016 * 210.00068 * 10 8 6 13 13 H 1.48504 * 109.46933 * 329.99933 * 10 8 6 14 14 C 1.35239 * 107.96532 * 359.71940 * 4 3 2 15 15 C 1.50695 * 126.16846 * 179.97438 * 14 4 3 16 16 C 1.35639 * 107.66825 * 0.02562 * 14 4 3 17 17 O 1.36193 * 126.08103 * 179.97438 * 16 14 4 18 18 C 1.34186 * 117.00123 * 89.99623 * 17 16 14 19 19 O 1.21214 * 119.99839 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.00113 * 179.97438 * 18 17 16 21 21 C 1.53123 * 109.52399 * 180.02562 * 20 18 17 22 22 C 1.53039 * 109.31189 * 182.46470 * 21 20 18 23 23 N 1.46842 * 109.52266 * 59.15550 * 22 21 20 24 24 C 1.46910 * 110.99703 * 174.16402 * 23 22 21 25 25 C 1.53002 * 117.49440 * 248.62308 * 24 23 22 26 26 C 1.52997 * 117.49743 * 180.02562 * 24 23 22 27 27 C 1.46849 * 111.20050 * 298.25785 * 23 22 21 28 28 C 1.53036 * 109.52274 * 61.74759 * 27 23 22 29 29 H 1.09000 * 109.47008 * 270.16786 * 1 2 3 30 30 H 1.09000 * 109.47204 * 30.16503 * 1 2 3 31 31 H 1.08996 * 109.47650 * 150.16780 * 1 2 3 32 32 H 1.08992 * 109.47083 * 29.95453 * 5 4 3 33 33 H 1.08998 * 109.47124 * 149.95643 * 5 4 3 34 34 H 0.96999 * 119.99752 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.47009 * 269.98088 * 15 14 4 36 36 H 1.09003 * 109.47271 * 29.97759 * 15 14 4 37 37 H 1.08994 * 109.47629 * 149.97705 * 15 14 4 38 38 H 1.09000 * 109.57596 * 300.16032 * 20 18 17 39 39 H 1.09002 * 109.50371 * 62.50019 * 21 20 18 40 40 H 1.09003 * 109.50070 * 302.42179 * 21 20 18 41 41 H 1.08995 * 109.46501 * 179.17754 * 22 21 20 42 42 H 1.09002 * 109.45552 * 299.15457 * 22 21 20 43 43 H 1.08999 * 115.54770 * 34.32946 * 24 23 22 44 44 H 1.08996 * 117.50195 * 0.02562 * 25 24 23 45 45 H 1.09001 * 117.49330 * 145.01911 * 25 24 23 46 46 H 1.09003 * 117.49811 * 214.97873 * 26 24 23 47 47 H 1.08999 * 117.49827 * 0.02562 * 26 24 23 48 48 H 1.09001 * 109.46071 * 181.75754 * 27 23 22 49 49 H 1.09002 * 109.46350 * 301.73871 * 27 23 22 50 50 H 1.09000 * 109.50390 * 60.75234 * 28 27 23 51 51 H 1.08997 * 109.50400 * 180.83976 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0601 0.0000 4 7 3.6093 0.6370 -0.0069 5 6 4.7885 1.5063 -0.0141 6 6 5.1857 1.8020 -1.4375 7 1 4.6164 1.3846 -2.2549 8 6 6.2752 2.6063 -1.6962 9 7 6.6216 2.8649 -2.9383 10 14 7.2595 3.3290 -0.2825 11 1 8.3514 2.3937 0.0895 12 1 7.8423 4.6298 -0.6990 13 1 6.3672 3.5378 0.8861 14 6 3.6183 -0.7154 -0.0047 15 6 4.8407 -1.5966 -0.0108 16 6 2.3287 -1.1356 0.0027 17 8 1.9071 -2.4307 0.0065 18 6 1.7250 -3.0085 1.2038 19 8 1.9344 -2.3794 2.2185 20 6 1.2591 -4.4392 1.2869 21 6 1.1317 -4.8515 2.7561 22 6 0.7179 -6.3227 2.8349 23 7 1.7244 -7.1524 2.1605 24 6 1.4318 -8.5814 2.3356 25 6 2.3880 -9.3964 3.2088 26 6 2.3915 -9.5832 1.6907 27 6 1.8298 -6.8075 0.7370 28 6 2.2770 -5.3507 0.5956 29 1 -0.3633 0.0030 1.0277 30 1 -0.3633 0.8885 -0.5164 31 1 -0.3634 -0.8914 -0.5112 32 1 4.5555 2.4390 0.4993 33 1 5.6116 1.0063 0.4963 34 1 7.3883 3.4305 -3.1203 35 1 5.1289 -1.8110 -1.0399 36 1 5.6592 -1.0862 0.4969 37 1 4.6184 -2.5300 0.5063 38 1 0.2907 -4.5370 0.7963 39 1 0.3766 -4.2344 3.2431 40 1 2.0906 -4.7159 3.2565 41 1 0.6407 -6.6228 3.8799 42 1 -0.2477 -6.4549 2.3468 43 1 0.3744 -8.8445 2.3654 44 1 3.2338 -8.8724 3.6536 45 1 1.9597 -10.1960 3.8133 46 1 1.9657 -10.5057 1.2960 47 1 3.2403 -9.1821 1.1368 48 1 2.5603 -7.4597 0.2584 49 1 0.8588 -6.9372 0.2590 50 1 3.2541 -5.2231 1.0615 51 1 2.3407 -5.0906 -0.4610 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772136311.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:22:53 Heat of formation + Delta-G solvation = 20.304855 kcal Electronic energy + Delta-G solvation = -30942.433630 eV Core-core repulsion = 26844.467334 eV Total energy + Delta-G solvation = -4097.966295 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.34670 -40.21036 -39.20707 -36.92979 -36.10335 -34.06603 -32.59958 -32.43901 -31.18530 -30.96677 -29.42197 -27.01150 -26.23829 -25.55280 -23.74137 -22.83026 -22.34167 -21.87359 -20.96351 -20.06664 -19.49224 -19.17954 -17.57554 -17.25280 -17.17119 -16.65531 -15.79502 -15.46751 -15.16424 -15.02231 -14.74291 -14.28179 -14.15671 -13.98833 -13.84288 -13.45152 -13.21515 -12.96866 -12.91697 -12.85415 -12.60645 -12.55896 -12.16356 -12.12913 -12.02895 -11.87259 -11.77874 -11.69036 -11.51143 -11.13509 -11.02661 -10.98846 -10.91507 -10.79739 -10.78098 -10.45582 -10.30469 -10.19042 -9.78742 -9.73747 -8.83226 -8.66969 -8.43660 -7.74607 -6.31270 -4.35443 2.28645 2.32369 2.65876 3.10213 3.15344 3.20868 3.25775 3.31117 3.43409 3.53130 4.17422 4.34328 4.44805 4.53762 4.59064 4.62877 4.81858 4.89642 4.91431 4.98858 5.02495 5.06888 5.10858 5.24489 5.25384 5.29053 5.36383 5.41185 5.47365 5.52391 5.58266 5.63799 5.67514 5.76267 5.83422 5.84712 5.86343 5.89820 6.02006 6.05437 6.05822 6.20430 6.29889 6.48453 6.59725 6.69693 6.75265 6.76651 7.16171 7.21338 7.60146 8.15860 8.22852 8.33170 8.72447 9.23058 10.80919 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016786 B = 0.002313 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.670753 B =12102.279336 C =12971.896851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.062 3.938 3 N -0.277 5.277 4 N -0.313 5.313 5 C 0.231 3.769 6 C -0.544 4.544 7 H 0.082 0.918 8 C 0.081 3.919 9 N -0.883 5.883 10 Si 0.871 3.129 11 H -0.270 1.270 12 H -0.278 1.278 13 H -0.263 1.263 14 C 0.107 3.893 15 C -0.085 4.085 16 C -0.101 4.101 17 O -0.251 6.251 18 C 0.444 3.556 19 O -0.494 6.494 20 C -0.077 4.077 21 C -0.101 4.101 22 C 0.062 3.938 23 N -0.513 5.513 24 C 0.003 3.997 25 C -0.163 4.163 26 C -0.176 4.176 27 C 0.059 3.941 28 C -0.110 4.110 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.270 0.730 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.036 0.964 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.100 0.900 48 H 0.082 0.918 49 H 0.038 0.962 50 H 0.078 0.922 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.163 -23.855 9.861 28.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 N -0.101 5.101 4 N -0.093 5.093 5 C 0.112 3.888 6 C -0.582 4.582 7 H 0.100 0.900 8 C -0.124 4.124 9 N -0.520 5.520 10 Si 0.697 3.303 11 H -0.195 1.195 12 H -0.203 1.203 13 H -0.188 1.188 14 C -0.026 4.026 15 C -0.143 4.143 16 C -0.154 4.154 17 O -0.162 6.162 18 C 0.287 3.713 19 O -0.380 6.380 20 C -0.096 4.096 21 C -0.139 4.139 22 C -0.065 4.065 23 N -0.238 5.238 24 C -0.105 4.105 25 C -0.201 4.201 26 C -0.213 4.213 27 C -0.068 4.068 28 C -0.148 4.148 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.122 0.878 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.055 0.945 43 H 0.107 0.893 44 H 0.119 0.881 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.118 0.882 48 H 0.100 0.900 49 H 0.056 0.944 50 H 0.097 0.903 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.336 -22.042 10.258 26.418 hybrid contribution -0.126 -0.373 0.210 0.446 sum -10.462 -22.415 10.469 26.860 Atomic orbital electron populations 1.20069 0.87134 1.03026 1.02325 1.22274 0.96877 0.89877 1.01387 1.77379 0.86959 1.21608 1.24169 1.48668 1.05782 1.03518 1.51348 1.20101 0.78984 0.89649 1.00064 1.21123 1.14343 1.32674 0.90041 0.89987 1.24787 0.96550 0.95211 0.95828 1.69866 1.26937 1.36774 1.18429 0.86922 0.80951 0.79653 0.82773 1.19539 1.20342 1.18760 1.20867 0.95995 0.86157 0.99567 1.20365 0.93173 0.97014 1.03793 1.17568 0.90499 0.82204 1.25150 1.84698 1.76426 1.23785 1.31339 1.24390 0.74565 0.89677 0.82668 1.90760 1.46054 1.64712 1.36431 1.21085 1.01294 0.87948 0.99264 1.21516 1.04065 0.94585 0.93752 1.22070 0.92424 0.92501 0.99535 1.61720 1.47526 1.01694 1.12845 1.22397 0.94944 0.86507 1.06686 1.23063 1.02250 1.01626 0.93171 1.23066 1.01949 0.99873 0.96421 1.22086 1.00532 0.96124 0.88052 1.21626 0.98726 0.92908 1.01520 0.91176 0.90706 0.90934 0.92724 0.93577 0.92017 0.89364 0.90550 0.91118 0.87768 0.90377 0.89884 0.90040 0.94540 0.89284 0.88084 0.88890 0.88713 0.88190 0.89951 0.94365 0.90328 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.44 36.00 0.38 -0.64 16 2 C 0.06 1.25 7.23 -82.28 -0.59 0.66 16 3 N -0.28 -6.46 12.57 33.73 0.42 -6.03 16 4 N -0.31 -7.36 3.60 -58.16 -0.21 -7.57 16 5 C 0.23 5.58 5.07 -5.19 -0.03 5.55 16 6 C -0.54 -15.12 9.94 -34.44 -0.34 -15.47 16 7 H 0.08 2.57 8.06 -52.48 -0.42 2.15 16 8 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 9 N -0.88 -26.01 13.96 55.43 0.77 -25.23 16 10 Si 0.87 20.07 27.47 -169.99 -4.67 15.40 16 11 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 14 C 0.11 2.24 6.95 -82.02 -0.57 1.67 16 15 C -0.09 -1.45 10.09 36.00 0.36 -1.09 16 16 C -0.10 -2.00 5.34 -39.78 -0.21 -2.21 16 17 O -0.25 -4.16 10.06 -24.25 -0.24 -4.40 16 18 C 0.44 6.57 7.21 36.00 0.26 6.83 16 19 O -0.49 -8.97 15.74 -19.06 -0.30 -9.27 16 20 C -0.08 -0.77 2.70 -91.64 -0.25 -1.02 16 21 C -0.10 -0.96 4.68 -26.65 -0.12 -1.09 16 22 C 0.06 0.48 5.43 -3.84 -0.02 0.46 16 23 N -0.51 -4.11 4.80 -226.68 -1.09 -5.20 16 24 C 0.00 0.02 5.30 -67.71 -0.36 -0.34 16 25 C -0.16 -1.03 10.46 -26.75 -0.28 -1.31 16 26 C -0.18 -1.05 9.70 -26.76 -0.26 -1.31 16 27 C 0.06 0.45 5.34 -3.83 -0.02 0.43 16 28 C -0.11 -0.99 5.31 -26.65 -0.14 -1.13 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 1.33 7.20 -51.93 -0.37 0.96 16 33 H 0.05 1.03 6.49 -51.93 -0.34 0.69 16 34 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 36 H 0.08 1.26 7.09 -51.93 -0.37 0.89 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.93 8.04 -51.93 -0.42 0.52 16 41 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16 42 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.09 0.56 8.08 -51.93 -0.42 0.14 16 44 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.10 0.64 7.23 -51.93 -0.38 0.26 16 48 H 0.08 0.57 6.68 -51.93 -0.35 0.23 16 49 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 50 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 414.90 15.07 6.25 6.25 Total: -1.00 -33.11 414.90 -9.93 -43.04 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -8.57 Total: 0.87 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -2.30 Total: -7.87 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: -0.10 Total: -44.04 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.54 Total: -13.67 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.67 Total: 15.40 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.11 -9.93 -43.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772136311.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.342 kcal (2) G-P(sol) polarization free energy of solvation -33.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds