Wall clock time and date at job start Wed Apr 1 2020 07:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30860 * 125.89092 * 2 1 4 4 N 1.40066 * 108.30581 * 180.29670 * 3 2 1 5 5 C 1.46503 * 126.01972 * 179.76075 * 4 3 2 6 6 C 1.50703 * 109.46758 * 269.95482 * 5 4 3 7 7 H 1.08004 * 119.99930 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00087 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00380 * 180.02562 * 8 6 5 10 10 Si 1.86808 * 119.99980 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47324 * 89.99646 * 10 8 6 12 12 H 1.48503 * 109.47016 * 210.00068 * 10 8 6 13 13 H 1.48504 * 109.46933 * 329.99933 * 10 8 6 14 14 C 1.35239 * 107.96532 * 359.71940 * 4 3 2 15 15 C 1.50695 * 126.16846 * 179.97438 * 14 4 3 16 16 C 1.35639 * 107.66825 * 0.02562 * 14 4 3 17 17 O 1.36193 * 126.08103 * 179.97438 * 16 14 4 18 18 C 1.34186 * 117.00123 * 89.99623 * 17 16 14 19 19 O 1.21214 * 119.99839 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.00113 * 179.97438 * 18 17 16 21 21 C 1.53123 * 109.52399 * 180.02562 * 20 18 17 22 22 C 1.53039 * 109.31189 * 182.46470 * 21 20 18 23 23 N 1.46842 * 109.52266 * 59.15550 * 22 21 20 24 24 C 1.46910 * 110.99703 * 174.16402 * 23 22 21 25 25 C 1.53002 * 117.49440 * 248.62308 * 24 23 22 26 26 C 1.52997 * 117.49743 * 180.02562 * 24 23 22 27 27 C 1.46849 * 111.20050 * 298.25785 * 23 22 21 28 28 C 1.53036 * 109.52274 * 61.74759 * 27 23 22 29 29 H 1.09000 * 109.47008 * 270.16786 * 1 2 3 30 30 H 1.09000 * 109.47204 * 30.16503 * 1 2 3 31 31 H 1.08996 * 109.47650 * 150.16780 * 1 2 3 32 32 H 1.08992 * 109.47083 * 29.95453 * 5 4 3 33 33 H 1.08998 * 109.47124 * 149.95643 * 5 4 3 34 34 H 0.96999 * 119.99752 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.47009 * 269.98088 * 15 14 4 36 36 H 1.09003 * 109.47271 * 29.97759 * 15 14 4 37 37 H 1.08994 * 109.47629 * 149.97705 * 15 14 4 38 38 H 1.09000 * 109.57596 * 300.16032 * 20 18 17 39 39 H 1.09002 * 109.50371 * 62.50019 * 21 20 18 40 40 H 1.09003 * 109.50070 * 302.42179 * 21 20 18 41 41 H 1.08995 * 109.46501 * 179.17754 * 22 21 20 42 42 H 1.09002 * 109.45552 * 299.15457 * 22 21 20 43 43 H 1.08999 * 115.54770 * 34.32946 * 24 23 22 44 44 H 1.08996 * 117.50195 * 0.02562 * 25 24 23 45 45 H 1.09001 * 117.49330 * 145.01911 * 25 24 23 46 46 H 1.09003 * 117.49811 * 214.97873 * 26 24 23 47 47 H 1.08999 * 117.49827 * 0.02562 * 26 24 23 48 48 H 1.09001 * 109.46071 * 181.75754 * 27 23 22 49 49 H 1.09002 * 109.46350 * 301.73871 * 27 23 22 50 50 H 1.09000 * 109.50390 * 60.75234 * 28 27 23 51 51 H 1.08997 * 109.50400 * 180.83976 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0601 0.0000 4 7 3.6093 0.6370 -0.0069 5 6 4.7885 1.5063 -0.0141 6 6 5.1857 1.8020 -1.4375 7 1 4.6164 1.3846 -2.2549 8 6 6.2752 2.6063 -1.6962 9 7 6.6216 2.8649 -2.9383 10 14 7.2595 3.3290 -0.2825 11 1 8.3514 2.3937 0.0895 12 1 7.8423 4.6298 -0.6990 13 1 6.3672 3.5378 0.8861 14 6 3.6183 -0.7154 -0.0047 15 6 4.8407 -1.5966 -0.0108 16 6 2.3287 -1.1356 0.0027 17 8 1.9071 -2.4307 0.0065 18 6 1.7250 -3.0085 1.2038 19 8 1.9344 -2.3794 2.2185 20 6 1.2591 -4.4392 1.2869 21 6 1.1317 -4.8515 2.7561 22 6 0.7179 -6.3227 2.8349 23 7 1.7244 -7.1524 2.1605 24 6 1.4318 -8.5814 2.3356 25 6 2.3880 -9.3964 3.2088 26 6 2.3915 -9.5832 1.6907 27 6 1.8298 -6.8075 0.7370 28 6 2.2770 -5.3507 0.5956 29 1 -0.3633 0.0030 1.0277 30 1 -0.3633 0.8885 -0.5164 31 1 -0.3634 -0.8914 -0.5112 32 1 4.5555 2.4390 0.4993 33 1 5.6116 1.0063 0.4963 34 1 7.3883 3.4305 -3.1203 35 1 5.1289 -1.8110 -1.0399 36 1 5.6592 -1.0862 0.4969 37 1 4.6184 -2.5300 0.5063 38 1 0.2907 -4.5370 0.7963 39 1 0.3766 -4.2344 3.2431 40 1 2.0906 -4.7159 3.2565 41 1 0.6407 -6.6228 3.8799 42 1 -0.2477 -6.4549 2.3468 43 1 0.3744 -8.8445 2.3654 44 1 3.2338 -8.8724 3.6536 45 1 1.9597 -10.1960 3.8133 46 1 1.9657 -10.5057 1.2960 47 1 3.2403 -9.1821 1.1368 48 1 2.5603 -7.4597 0.2584 49 1 0.8588 -6.9372 0.2590 50 1 3.2541 -5.2231 1.0615 51 1 2.3407 -5.0906 -0.4610 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772136311.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 07:22:51 Heat of formation + Delta-G solvation = 0.648503 kcal Electronic energy + Delta-G solvation = -30943.285993 eV Core-core repulsion = 26844.467334 eV Total energy + Delta-G solvation = -4098.818659 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -42.80655 -41.43947 -40.01853 -38.01385 -36.98482 -35.89205 -34.45443 -33.21625 -32.56066 -31.84550 -31.01113 -28.39251 -27.93386 -26.58226 -24.48245 -24.32528 -23.19636 -22.80106 -21.67238 -21.02874 -20.88770 -20.57127 -19.30582 -18.86615 -18.26232 -17.52891 -17.29039 -16.57778 -16.43663 -16.01893 -15.79139 -15.60793 -15.14714 -15.06627 -14.87489 -14.67680 -14.54616 -14.29446 -14.22963 -14.13304 -13.80404 -13.62470 -13.47849 -13.37502 -13.25764 -13.15603 -12.93616 -12.61811 -12.55775 -12.44328 -12.32582 -12.18063 -12.06581 -11.86262 -11.77772 -11.62026 -11.39932 -11.31829 -11.23756 -10.97287 -10.93504 -10.11192 -9.35598 -9.20863 -8.44934 -6.56767 0.74599 1.11831 1.16596 1.31420 1.33475 1.43331 1.58618 2.17704 2.22365 2.78150 2.86576 2.95370 3.43545 3.56926 3.63619 3.72143 3.86866 3.99674 4.06300 4.11198 4.21575 4.27394 4.29201 4.30282 4.35679 4.38001 4.42111 4.50714 4.59710 4.65740 4.66460 4.72262 4.75623 4.80546 4.81350 4.85226 4.89403 4.92736 4.95639 5.08049 5.12784 5.14478 5.15098 5.16473 5.30411 5.37114 5.37465 5.71978 5.84950 6.13137 6.19098 6.22839 6.45478 6.69436 6.86553 7.06846 8.71329 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016786 B = 0.002313 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.670753 B =12102.279336 C =12971.896851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.059 3.941 3 N -0.322 5.322 4 N -0.340 5.340 5 C 0.240 3.760 6 C -0.552 4.552 7 H 0.028 0.972 8 C 0.026 3.974 9 N -0.932 5.932 10 Si 0.947 3.053 11 H -0.249 1.249 12 H -0.275 1.275 13 H -0.248 1.248 14 C 0.090 3.910 15 C -0.083 4.083 16 C -0.103 4.103 17 O -0.247 6.247 18 C 0.448 3.552 19 O -0.529 6.529 20 C -0.067 4.067 21 C -0.097 4.097 22 C 0.069 3.931 23 N -0.528 5.528 24 C -0.002 4.002 25 C -0.167 4.167 26 C -0.171 4.171 27 C 0.064 3.936 28 C -0.106 4.106 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.275 0.725 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.131 0.869 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.086 0.914 42 H 0.052 0.948 43 H 0.100 0.900 44 H 0.087 0.913 45 H 0.105 0.895 46 H 0.108 0.892 47 H 0.094 0.906 48 H 0.088 0.912 49 H 0.050 0.950 50 H 0.063 0.937 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.905 -26.039 11.363 30.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.107 4.107 3 N -0.146 5.146 4 N -0.121 5.121 5 C 0.121 3.879 6 C -0.590 4.590 7 H 0.046 0.954 8 C -0.175 4.175 9 N -0.570 5.570 10 Si 0.768 3.232 11 H -0.173 1.173 12 H -0.200 1.200 13 H -0.172 1.172 14 C -0.041 4.041 15 C -0.141 4.141 16 C -0.157 4.157 17 O -0.159 6.159 18 C 0.293 3.707 19 O -0.416 6.416 20 C -0.086 4.086 21 C -0.135 4.135 22 C -0.059 4.059 23 N -0.253 5.253 24 C -0.110 4.110 25 C -0.205 4.205 26 C -0.208 4.208 27 C -0.063 4.063 28 C -0.144 4.144 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.149 0.851 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.070 0.930 43 H 0.117 0.883 44 H 0.106 0.894 45 H 0.124 0.876 46 H 0.127 0.873 47 H 0.112 0.888 48 H 0.107 0.893 49 H 0.069 0.931 50 H 0.082 0.918 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.097 -24.267 11.760 29.160 hybrid contribution -0.005 0.191 -0.319 0.372 sum -11.102 -24.076 11.441 28.876 Atomic orbital electron populations 1.20263 0.83794 1.04581 1.03721 1.23101 0.98982 0.89378 0.99264 1.77290 0.87390 1.23517 1.26385 1.48568 1.05640 1.04361 1.53496 1.19856 0.80242 0.90255 0.97571 1.21158 1.14182 1.32933 0.90715 0.95386 1.25773 0.97555 0.95222 0.98944 1.70014 1.27941 1.37833 1.21184 0.85738 0.79542 0.78955 0.79003 1.17339 1.20005 1.17212 1.21538 0.97871 0.85688 0.99046 1.20473 0.91957 0.97310 1.04348 1.17687 0.90250 0.83547 1.24203 1.84709 1.76357 1.22177 1.32650 1.25288 0.73232 0.90898 0.81330 1.90753 1.47708 1.65827 1.37343 1.21256 1.02595 0.84549 1.00235 1.21471 1.02912 0.96128 0.92940 1.22009 0.92892 0.90887 1.00112 1.61679 1.48034 1.02541 1.13085 1.22468 0.95571 0.85814 1.07186 1.23086 1.01859 1.01887 0.93635 1.23107 1.01500 1.00119 0.96060 1.22045 1.01289 0.94857 0.88099 1.21616 0.97661 0.93782 1.01382 0.89676 0.89947 0.88588 0.93056 0.91209 0.91571 0.89060 0.90061 0.88924 0.85109 0.90473 0.92131 0.89562 0.93018 0.88288 0.89414 0.87626 0.87322 0.88778 0.89347 0.93146 0.91771 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.89 10.44 71.23 0.74 -1.15 16 2 C 0.06 2.39 7.23 43.17 0.31 2.70 16 3 N -0.32 -15.38 12.57 -47.19 -0.59 -15.97 16 4 N -0.34 -16.36 3.60 -337.93 -1.22 -17.58 16 5 C 0.24 11.77 5.07 85.63 0.43 12.20 16 6 C -0.55 -31.85 9.94 25.60 0.25 -31.59 16 7 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 8 C 0.03 1.44 5.47 84.65 0.46 1.90 16 9 N -0.93 -56.45 13.96 21.45 0.30 -56.15 16 10 Si 0.95 41.17 27.47 68.60 1.88 43.06 16 11 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 12 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 13 H -0.25 -10.16 6.54 99.48 0.65 -9.51 16 14 C 0.09 3.81 6.95 41.43 0.29 4.10 16 15 C -0.08 -2.80 10.09 71.23 0.72 -2.08 16 16 C -0.10 -4.09 5.34 22.14 0.12 -3.97 16 17 O -0.25 -7.92 10.06 2.22 0.02 -7.90 16 18 C 0.45 12.68 7.21 71.23 0.51 13.20 16 19 O -0.53 -18.94 15.74 20.77 0.33 -18.61 16 20 C -0.07 -1.22 2.70 -11.46 -0.03 -1.25 16 21 C -0.10 -1.68 4.68 30.65 0.14 -1.54 16 22 C 0.07 0.88 5.43 86.33 0.47 1.35 16 23 N -0.53 -7.29 4.80 -871.10 -4.18 -11.47 16 24 C 0.00 -0.02 5.30 44.91 0.24 0.22 16 25 C -0.17 -1.80 10.46 30.58 0.32 -1.48 16 26 C -0.17 -1.66 9.70 30.58 0.30 -1.36 16 27 C 0.06 0.81 5.34 86.32 0.46 1.27 16 28 C -0.11 -1.70 5.31 30.65 0.16 -1.54 16 29 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.05 2.52 7.20 -2.39 -0.02 2.50 16 33 H 0.07 3.05 6.49 -2.39 -0.02 3.04 16 34 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.08 2.63 7.09 -2.39 -0.02 2.61 16 37 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.06 1.33 8.04 -2.39 -0.02 1.32 16 41 H 0.09 1.05 8.12 -2.39 -0.02 1.03 16 42 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.10 0.93 8.08 -2.39 -0.02 0.91 16 44 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.11 0.75 8.14 -2.39 -0.02 0.74 16 47 H 0.09 1.03 7.23 -2.39 -0.02 1.02 16 48 H 0.09 1.02 6.68 -2.39 -0.02 1.01 16 49 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 50 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 51 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -75.28 414.90 3.30 -71.98 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.86 Total: 21.68 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 5.90 Total: -9.03 kcal Atomic # 7 Polarization: -95.47 SS G_CDS: -5.70 Total: -101.17 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: 0.35 Total: -26.51 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 1.88 Total: 43.06 kcal Total: -75.28 3.30 -71.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772136311.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.627 kcal (2) G-P(sol) polarization free energy of solvation -75.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds