Wall clock time and date at job start Wed Apr 1 2020 05:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.53966 * 2 1 4 4 C 1.53101 * 109.50988 * 120.10467 * 2 1 3 5 5 N 1.47011 * 109.26088 * 176.78524 * 4 2 1 6 6 C 1.46893 * 111.00002 * 177.60913 * 5 4 2 7 7 C 1.53001 * 109.47335 * 170.00025 * 6 5 4 8 8 N 1.46497 * 109.47341 * 180.02562 * 7 6 5 9 9 C 1.34780 * 119.99848 * 180.02562 * 8 7 6 10 10 O 1.21575 * 120.00202 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99714 * 179.97438 * 9 8 7 12 12 C 1.39245 * 119.99638 * 175.70888 * 11 9 8 13 13 C 1.39485 * 119.83302 * 215.02428 * 12 11 9 14 14 C 1.36377 * 120.16805 * 179.76527 * 13 12 11 15 15 C 1.40867 * 119.82457 * 0.52778 * 14 13 12 16 16 C 1.41162 * 120.15676 * 179.69951 * 15 14 13 17 17 H 1.08004 * 119.99854 * 214.80405 * 16 15 14 18 18 C 1.39893 * 120.00223 * 34.81099 * 16 15 14 19 19 N 1.30878 * 120.00051 * 355.55158 * 18 16 15 20 20 Si 1.86796 * 119.99896 * 175.55616 * 18 16 15 21 21 H 1.48492 * 109.47598 * 89.99998 * 20 18 16 22 22 H 1.48505 * 109.47142 * 210.00176 * 20 18 16 23 23 H 1.48503 * 109.47096 * 329.99644 * 20 18 16 24 24 C 1.40862 * 119.67567 * 359.72566 * 15 14 13 25 25 C 1.36376 * 119.83025 * 359.97438 * 24 15 14 26 26 C 1.47014 * 110.75263 * 301.38588 * 5 4 2 27 27 C 1.53098 * 109.25969 * 58.61580 * 26 5 4 28 28 O 1.43013 * 109.25764 * 303.15199 * 27 26 5 29 29 H 1.08995 * 109.47258 * 299.88958 * 1 2 3 30 30 H 1.09004 * 109.47383 * 59.89793 * 1 2 3 31 31 H 1.09000 * 109.46550 * 179.89337 * 1 2 3 32 32 H 1.09003 * 109.47403 * 180.11151 * 3 2 1 33 33 H 1.08997 * 109.47189 * 300.10310 * 3 2 1 34 34 H 1.08995 * 109.47515 * 60.10556 * 3 2 1 35 35 H 1.08997 * 109.50036 * 56.84985 * 4 2 1 36 36 H 1.08993 * 109.54082 * 296.74464 * 4 2 1 37 37 H 1.09001 * 109.47609 * 50.00201 * 6 5 4 38 38 H 1.08997 * 109.47390 * 290.00134 * 6 5 4 39 39 H 1.08997 * 109.46971 * 300.00366 * 7 6 5 40 40 H 1.09005 * 109.47122 * 59.99592 * 7 6 5 41 41 H 0.96992 * 120.00111 * 359.97438 * 8 7 6 42 42 H 0.96995 * 120.00240 * 355.71335 * 11 9 8 43 43 H 1.08001 * 119.91126 * 359.97438 * 13 12 11 44 44 H 1.08003 * 120.08411 * 180.25582 * 14 13 12 45 45 H 0.96999 * 120.00303 * 179.97438 * 19 18 16 46 46 H 1.08000 * 120.08387 * 179.97438 * 24 15 14 47 47 H 1.07997 * 119.91726 * 180.02562 * 25 24 15 48 48 H 1.09005 * 109.50997 * 178.54764 * 26 5 4 49 49 H 1.08994 * 109.50766 * 298.67817 * 26 5 4 50 50 H 1.09000 * 109.50963 * 183.21530 * 27 26 5 51 51 H 1.09006 * 109.54418 * 63.10620 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4419 0.0000 4 6 2.0413 -0.7238 1.2484 5 7 3.5093 -0.7883 1.2045 6 6 4.0446 -1.4267 2.4143 7 6 5.5381 -1.7017 2.2277 8 7 6.0719 -2.3389 3.4340 9 6 7.3756 -2.6745 3.4982 10 8 8.1086 -2.4489 2.5549 11 7 7.8667 -3.2602 4.6083 12 6 9.1914 -3.6881 4.6417 13 6 9.5297 -4.8440 5.3452 14 6 10.8242 -5.2719 5.3784 15 6 11.8224 -4.5370 4.7092 16 6 13.1655 -4.9700 4.7443 17 1 13.9661 -4.2454 4.7653 18 6 13.4596 -6.3377 4.7517 19 7 12.4905 -7.2151 4.8141 20 14 15.2354 -6.9116 4.6728 21 1 15.7756 -7.0412 6.0499 22 1 15.3001 -8.2286 3.9897 23 1 16.0425 -5.9213 3.9156 24 6 11.4738 -3.3677 4.0053 25 6 10.1741 -2.9557 3.9759 26 6 3.9640 -1.4883 -0.0057 27 6 3.4335 -0.7568 -1.2416 28 8 2.0076 -0.6763 -1.1662 29 1 -0.3633 0.5121 0.8909 30 1 -0.3634 0.5154 -0.8891 31 1 -0.3632 -1.0277 -0.0019 32 1 3.1317 1.4406 -0.0020 33 1 1.6775 1.9567 -0.8890 34 1 1.6806 1.9556 0.8909 35 1 1.6332 -1.7342 1.2760 36 1 1.7273 -0.1801 2.1394 37 1 3.5215 -2.3665 2.5912 38 1 3.9011 -0.7647 3.2683 39 1 5.6817 -2.3636 1.3737 40 1 6.0613 -0.7619 2.0508 41 1 5.4872 -2.5185 4.1868 42 1 7.2975 -3.3838 5.3838 43 1 8.7640 -5.4034 5.8620 44 1 11.0840 -6.1694 5.9201 45 1 12.6943 -8.1634 4.8189 46 1 12.2338 -2.7990 3.4902 47 1 9.9052 -2.0597 3.4363 48 1 5.0537 -1.5019 -0.0307 49 1 3.5868 -2.5109 0.0019 50 1 3.7202 -1.3041 -2.1395 51 1 3.8534 0.2485 -1.2785 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171226726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:06 Heat of formation + Delta-G solvation = -40.501601 kcal Electronic energy + Delta-G solvation = -29739.369788 eV Core-core repulsion = 25638.766727 eV Total energy + Delta-G solvation = -4100.603061 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.54812 -39.86947 -37.61304 -36.75736 -34.56089 -34.18639 -33.95746 -32.83388 -30.09194 -29.53702 -29.10916 -28.30137 -27.69361 -25.37510 -24.55257 -23.86708 -21.76244 -21.29173 -20.86164 -20.05052 -19.69129 -17.99672 -17.23707 -16.99178 -16.65493 -16.42253 -15.99084 -15.56658 -15.17642 -15.12523 -14.99978 -14.73905 -14.12918 -13.96641 -13.85503 -13.82981 -13.35598 -12.96698 -12.77006 -12.65300 -12.57637 -12.42628 -12.25899 -12.10186 -11.97764 -11.80042 -11.65199 -11.50934 -11.34093 -11.28576 -11.12601 -10.96288 -10.69340 -10.64377 -10.08698 -9.92317 -9.53012 -9.43757 -9.21413 -8.96322 -8.83564 -8.77978 -7.50499 -6.80269 -6.57836 -4.30067 2.66847 2.85115 3.11163 3.11665 3.15425 3.19966 3.35796 3.54206 3.71007 4.01170 4.27300 4.43410 4.52094 4.60463 4.64839 4.71440 4.74271 4.78036 4.89429 4.99319 5.12662 5.15918 5.22493 5.24801 5.26384 5.41781 5.49724 5.55162 5.62243 5.67012 5.69846 5.73256 5.77357 5.97144 6.22062 6.40579 6.49002 6.50694 6.60592 6.79608 6.83787 6.87819 7.07997 7.18500 7.29974 7.43199 7.68940 7.89319 8.00119 8.13131 8.34644 8.48013 8.67737 8.95483 8.97148 9.11042 10.33458 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.030324 B = 0.001573 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.147441 B =17795.667194 C =18078.939805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.113 3.887 3 C -0.169 4.169 4 C 0.032 3.968 5 N -0.528 5.528 6 C 0.045 3.955 7 C 0.138 3.862 8 N -0.753 5.753 9 C 0.696 3.304 10 O -0.576 6.576 11 N -0.667 5.667 12 C 0.023 3.977 13 C -0.124 4.124 14 C -0.140 4.140 15 C 0.097 3.903 16 C -0.462 4.462 17 H 0.075 0.925 18 C 0.069 3.931 19 N -0.814 5.814 20 Si 0.915 3.085 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.203 4.203 25 C -0.087 4.087 26 C 0.007 3.993 27 C 0.062 3.938 28 O -0.378 6.378 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.392 0.608 42 H 0.391 0.609 43 H 0.090 0.910 44 H 0.132 0.868 45 H 0.277 0.723 46 H 0.095 0.905 47 H 0.109 0.891 48 H 0.097 0.903 49 H 0.045 0.955 50 H 0.099 0.901 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.217 11.293 -4.868 26.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.074 3.926 3 C -0.226 4.226 4 C -0.096 4.096 5 N -0.253 5.253 6 C -0.083 4.083 7 C 0.013 3.987 8 N -0.411 5.411 9 C 0.396 3.604 10 O -0.453 6.453 11 N -0.313 5.313 12 C -0.070 4.070 13 C -0.144 4.144 14 C -0.160 4.160 15 C 0.095 3.905 16 C -0.493 4.493 17 H 0.093 0.907 18 C -0.145 4.145 19 N -0.442 5.442 20 Si 0.740 3.260 21 H -0.196 1.196 22 H -0.204 1.204 23 H -0.188 1.188 24 C -0.224 4.224 25 C -0.107 4.107 26 C -0.121 4.121 27 C -0.015 4.015 28 O -0.297 6.297 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.225 0.775 42 H 0.224 0.776 43 H 0.108 0.892 44 H 0.149 0.851 45 H 0.088 0.912 46 H 0.114 0.886 47 H 0.127 0.873 48 H 0.116 0.884 49 H 0.063 0.937 50 H 0.117 0.883 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.518 11.650 -5.928 26.037 hybrid contribution 0.018 -1.385 0.888 1.645 sum -22.500 10.265 -5.039 25.239 Atomic orbital electron populations 1.21748 0.92210 1.02852 1.02782 1.21546 0.94497 0.91975 0.84599 1.22282 1.03071 0.95191 1.02077 1.22790 0.87498 1.00077 0.99271 1.62206 1.08870 1.52388 1.01868 1.22289 0.94546 0.98069 0.93376 1.21176 0.91951 0.98345 0.87191 1.44993 1.08975 1.67711 1.19400 1.15971 0.81522 0.79366 0.83504 1.90912 1.57221 1.59656 1.37523 1.42104 1.12289 1.62725 1.14159 1.17078 0.80985 0.98135 1.10768 1.20293 0.97132 0.94445 1.02552 1.21172 0.91252 1.01842 1.01746 1.17720 0.93800 0.90567 0.88440 1.19482 0.92856 0.91812 1.45144 0.90671 1.25861 0.99215 0.96785 0.92661 1.69765 1.33126 1.02766 1.38506 0.86207 0.82303 0.78473 0.79034 1.19579 1.20359 1.18756 1.20807 0.94644 1.01706 1.05201 1.20427 0.92188 0.98718 0.99357 1.22989 1.02166 0.96439 0.90536 1.22690 0.81000 1.00593 0.97247 1.88029 1.21144 1.77750 1.42766 0.90947 0.91443 0.91916 0.90815 0.92347 0.91742 0.93850 0.89612 0.94022 0.89752 0.91531 0.90796 0.77544 0.77559 0.89191 0.85054 0.91234 0.88631 0.87334 0.88441 0.93670 0.88306 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 8.85 37.16 0.33 -0.49 16 2 C 0.11 0.86 1.11 -90.57 -0.10 0.75 16 3 C -0.17 -1.18 8.17 37.16 0.30 -0.88 16 4 C 0.03 0.24 4.32 -3.71 -0.02 0.22 16 5 N -0.53 -4.40 4.24 -234.32 -0.99 -5.40 16 6 C 0.05 0.37 5.39 -3.83 -0.02 0.34 16 7 C 0.14 1.53 4.94 -4.04 -0.02 1.51 16 8 N -0.75 -9.22 5.56 -65.23 -0.36 -9.58 16 9 C 0.70 12.36 8.40 -86.91 -0.73 11.63 16 10 O -0.58 -12.85 13.76 5.30 0.07 -12.77 16 11 N -0.67 -11.78 5.31 -14.10 -0.07 -11.85 16 12 C 0.02 0.52 6.31 -83.57 -0.53 -0.01 16 13 C -0.12 -2.84 9.90 -39.79 -0.39 -3.24 16 14 C -0.14 -3.63 8.62 -39.26 -0.34 -3.97 16 15 C 0.10 2.64 5.55 -106.80 -0.59 2.05 16 16 C -0.46 -12.48 9.02 -37.85 -0.34 -12.82 16 17 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 18 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16 19 N -0.81 -21.42 10.60 55.54 0.59 -20.84 16 20 Si 0.91 19.24 29.56 -169.99 -5.03 14.21 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 24 C -0.20 -5.24 9.74 -39.26 -0.38 -5.62 16 25 C -0.09 -2.12 8.61 -39.79 -0.34 -2.46 16 26 C 0.01 0.06 4.94 -3.71 -0.02 0.04 16 27 C 0.06 0.51 6.61 37.21 0.25 0.75 16 28 O -0.38 -3.59 10.28 -35.23 -0.36 -3.95 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.60 6.12 -51.93 -0.32 0.28 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.82 6.28 -51.93 -0.33 0.49 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.39 3.47 8.49 -40.82 -0.35 3.12 16 42 H 0.39 5.31 8.83 -40.82 -0.36 4.95 16 43 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 44 H 0.13 3.51 6.13 -52.48 -0.32 3.19 16 45 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 46 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 47 H 0.11 2.64 6.22 -52.49 -0.33 2.32 16 48 H 0.10 0.88 6.05 -51.93 -0.31 0.57 16 49 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.06 0.51 6.49 -51.93 -0.34 0.17 16 LS Contribution 401.05 15.07 6.04 6.04 Total: -1.00 -32.10 401.05 -11.27 -43.37 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -8.11 Total: 11.28 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -3.04 Total: -10.51 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.84 Total: -47.67 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.29 Total: -16.73 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.10 -11.27 -43.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171226726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.868 kcal (2) G-P(sol) polarization free energy of solvation -32.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds