Wall clock time and date at job start Wed Apr 1 2020 05:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.53966 * 2 1 4 4 C 1.53101 * 109.50988 * 120.10467 * 2 1 3 5 5 N 1.47011 * 109.26088 * 176.78524 * 4 2 1 6 6 C 1.46893 * 111.00002 * 177.60913 * 5 4 2 7 7 C 1.53001 * 109.47335 * 170.00025 * 6 5 4 8 8 N 1.46497 * 109.47341 * 180.02562 * 7 6 5 9 9 C 1.34780 * 119.99848 * 180.02562 * 8 7 6 10 10 O 1.21575 * 120.00202 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99714 * 179.97438 * 9 8 7 12 12 C 1.39245 * 119.99638 * 175.70888 * 11 9 8 13 13 C 1.39485 * 119.83302 * 215.02428 * 12 11 9 14 14 C 1.36377 * 120.16805 * 179.76527 * 13 12 11 15 15 C 1.40867 * 119.82457 * 0.52778 * 14 13 12 16 16 C 1.41162 * 120.15676 * 179.69951 * 15 14 13 17 17 H 1.08004 * 119.99854 * 214.80405 * 16 15 14 18 18 C 1.39893 * 120.00223 * 34.81099 * 16 15 14 19 19 N 1.30878 * 120.00051 * 355.55158 * 18 16 15 20 20 Si 1.86796 * 119.99896 * 175.55616 * 18 16 15 21 21 H 1.48492 * 109.47598 * 89.99998 * 20 18 16 22 22 H 1.48505 * 109.47142 * 210.00176 * 20 18 16 23 23 H 1.48503 * 109.47096 * 329.99644 * 20 18 16 24 24 C 1.40862 * 119.67567 * 359.72566 * 15 14 13 25 25 C 1.36376 * 119.83025 * 359.97438 * 24 15 14 26 26 C 1.47014 * 110.75263 * 301.38588 * 5 4 2 27 27 C 1.53098 * 109.25969 * 58.61580 * 26 5 4 28 28 O 1.43013 * 109.25764 * 303.15199 * 27 26 5 29 29 H 1.08995 * 109.47258 * 299.88958 * 1 2 3 30 30 H 1.09004 * 109.47383 * 59.89793 * 1 2 3 31 31 H 1.09000 * 109.46550 * 179.89337 * 1 2 3 32 32 H 1.09003 * 109.47403 * 180.11151 * 3 2 1 33 33 H 1.08997 * 109.47189 * 300.10310 * 3 2 1 34 34 H 1.08995 * 109.47515 * 60.10556 * 3 2 1 35 35 H 1.08997 * 109.50036 * 56.84985 * 4 2 1 36 36 H 1.08993 * 109.54082 * 296.74464 * 4 2 1 37 37 H 1.09001 * 109.47609 * 50.00201 * 6 5 4 38 38 H 1.08997 * 109.47390 * 290.00134 * 6 5 4 39 39 H 1.08997 * 109.46971 * 300.00366 * 7 6 5 40 40 H 1.09005 * 109.47122 * 59.99592 * 7 6 5 41 41 H 0.96992 * 120.00111 * 359.97438 * 8 7 6 42 42 H 0.96995 * 120.00240 * 355.71335 * 11 9 8 43 43 H 1.08001 * 119.91126 * 359.97438 * 13 12 11 44 44 H 1.08003 * 120.08411 * 180.25582 * 14 13 12 45 45 H 0.96999 * 120.00303 * 179.97438 * 19 18 16 46 46 H 1.08000 * 120.08387 * 179.97438 * 24 15 14 47 47 H 1.07997 * 119.91726 * 180.02562 * 25 24 15 48 48 H 1.09005 * 109.50997 * 178.54764 * 26 5 4 49 49 H 1.08994 * 109.50766 * 298.67817 * 26 5 4 50 50 H 1.09000 * 109.50963 * 183.21530 * 27 26 5 51 51 H 1.09006 * 109.54418 * 63.10620 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4419 0.0000 4 6 2.0413 -0.7238 1.2484 5 7 3.5093 -0.7883 1.2045 6 6 4.0446 -1.4267 2.4143 7 6 5.5381 -1.7017 2.2277 8 7 6.0719 -2.3389 3.4340 9 6 7.3756 -2.6745 3.4982 10 8 8.1086 -2.4489 2.5549 11 7 7.8667 -3.2602 4.6083 12 6 9.1914 -3.6881 4.6417 13 6 9.5297 -4.8440 5.3452 14 6 10.8242 -5.2719 5.3784 15 6 11.8224 -4.5370 4.7092 16 6 13.1655 -4.9700 4.7443 17 1 13.9661 -4.2454 4.7653 18 6 13.4596 -6.3377 4.7517 19 7 12.4905 -7.2151 4.8141 20 14 15.2354 -6.9116 4.6728 21 1 15.7756 -7.0412 6.0499 22 1 15.3001 -8.2286 3.9897 23 1 16.0425 -5.9213 3.9156 24 6 11.4738 -3.3677 4.0053 25 6 10.1741 -2.9557 3.9759 26 6 3.9640 -1.4883 -0.0057 27 6 3.4335 -0.7568 -1.2416 28 8 2.0076 -0.6763 -1.1662 29 1 -0.3633 0.5121 0.8909 30 1 -0.3634 0.5154 -0.8891 31 1 -0.3632 -1.0277 -0.0019 32 1 3.1317 1.4406 -0.0020 33 1 1.6775 1.9567 -0.8890 34 1 1.6806 1.9556 0.8909 35 1 1.6332 -1.7342 1.2760 36 1 1.7273 -0.1801 2.1394 37 1 3.5215 -2.3665 2.5912 38 1 3.9011 -0.7647 3.2683 39 1 5.6817 -2.3636 1.3737 40 1 6.0613 -0.7619 2.0508 41 1 5.4872 -2.5185 4.1868 42 1 7.2975 -3.3838 5.3838 43 1 8.7640 -5.4034 5.8620 44 1 11.0840 -6.1694 5.9201 45 1 12.6943 -8.1634 4.8189 46 1 12.2338 -2.7990 3.4902 47 1 9.9052 -2.0597 3.4363 48 1 5.0537 -1.5019 -0.0307 49 1 3.5868 -2.5109 0.0019 50 1 3.7202 -1.3041 -2.1395 51 1 3.8534 0.2485 -1.2785 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171226726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:05 Heat of formation + Delta-G solvation = -62.470586 kcal Electronic energy + Delta-G solvation = -29740.322435 eV Core-core repulsion = 25638.766727 eV Total energy + Delta-G solvation = -4101.555708 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.49043 -41.05330 -39.29573 -37.69205 -36.16469 -35.43894 -34.66096 -34.51804 -31.50470 -31.13096 -30.35974 -29.40902 -28.19610 -26.83131 -25.61861 -24.65191 -23.40935 -22.68990 -22.09623 -21.63748 -20.30351 -19.46452 -19.11130 -18.27773 -17.41284 -17.33736 -17.02879 -16.91059 -16.37207 -16.11980 -15.89635 -15.72338 -15.65636 -15.26204 -15.01380 -14.78732 -14.61616 -14.40079 -14.01318 -13.94823 -13.57402 -13.33165 -13.22134 -13.18071 -12.97002 -12.87318 -12.83695 -12.79070 -12.62554 -12.47195 -12.42389 -12.11163 -11.97540 -11.83546 -11.39435 -11.26808 -11.22739 -11.02646 -10.66151 -10.56279 -10.11581 -9.44758 -9.42927 -8.67761 -8.48415 -6.30772 0.85769 1.16227 1.40253 1.47353 1.54667 1.67101 2.19415 2.25882 2.70086 2.82446 2.85134 3.43189 3.63226 3.70363 3.81109 3.89468 4.01353 4.07023 4.11263 4.21532 4.33449 4.40911 4.45551 4.54673 4.58812 4.65668 4.70725 4.76631 4.80669 4.84823 4.89259 4.95353 4.96317 5.01252 5.05543 5.15066 5.16354 5.27477 5.34264 5.40686 5.42866 5.46247 5.70960 5.82673 5.85069 5.89218 6.04746 6.12922 6.26415 6.27284 6.41840 6.70296 6.98873 7.02915 7.15088 7.64463 8.44329 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.030324 B = 0.001573 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.147441 B =17795.667194 C =18078.939805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.105 3.895 3 C -0.164 4.164 4 C 0.034 3.966 5 N -0.533 5.533 6 C 0.057 3.943 7 C 0.141 3.859 8 N -0.727 5.727 9 C 0.693 3.307 10 O -0.624 6.624 11 N -0.658 5.658 12 C 0.041 3.959 13 C -0.120 4.120 14 C -0.157 4.157 15 C 0.064 3.936 16 C -0.499 4.499 17 H 0.072 0.928 18 C 0.028 3.972 19 N -0.843 5.843 20 Si 0.988 3.012 21 H -0.259 1.259 22 H -0.270 1.270 23 H -0.264 1.264 24 C -0.219 4.219 25 C -0.099 4.099 26 C 0.009 3.991 27 C 0.061 3.939 28 O -0.396 6.396 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.039 0.961 36 H 0.104 0.896 37 H 0.052 0.948 38 H 0.103 0.897 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.413 0.587 42 H 0.415 0.585 43 H 0.126 0.874 44 H 0.119 0.881 45 H 0.284 0.716 46 H 0.094 0.906 47 H 0.107 0.893 48 H 0.089 0.911 49 H 0.038 0.962 50 H 0.106 0.894 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.259 11.433 -3.961 28.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.066 3.934 3 C -0.221 4.221 4 C -0.094 4.094 5 N -0.259 5.259 6 C -0.071 4.071 7 C 0.016 3.984 8 N -0.385 5.385 9 C 0.394 3.606 10 O -0.504 6.504 11 N -0.306 5.306 12 C -0.053 4.053 13 C -0.141 4.141 14 C -0.177 4.177 15 C 0.062 3.938 16 C -0.530 4.530 17 H 0.090 0.910 18 C -0.184 4.184 19 N -0.471 5.471 20 Si 0.809 3.191 21 H -0.184 1.184 22 H -0.195 1.195 23 H -0.188 1.188 24 C -0.239 4.239 25 C -0.119 4.119 26 C -0.119 4.119 27 C -0.015 4.015 28 O -0.316 6.316 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.122 0.878 37 H 0.070 0.930 38 H 0.121 0.879 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.250 0.750 42 H 0.252 0.748 43 H 0.143 0.857 44 H 0.137 0.863 45 H 0.095 0.905 46 H 0.113 0.887 47 H 0.125 0.875 48 H 0.107 0.893 49 H 0.056 0.944 50 H 0.124 0.876 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.658 11.809 -4.977 27.789 hybrid contribution 0.460 -1.330 0.571 1.518 sum -24.198 10.479 -4.406 26.736 Atomic orbital electron populations 1.21762 0.90954 1.02911 1.03688 1.21772 0.95498 0.92030 0.84097 1.22234 1.02145 0.95058 1.02690 1.22834 0.86538 1.00114 0.99927 1.62235 1.09719 1.52255 1.01655 1.22202 0.92020 0.99049 0.93852 1.21206 0.93904 0.97140 0.86116 1.44722 1.07163 1.66086 1.20511 1.16151 0.82799 0.78955 0.82716 1.90892 1.58964 1.61405 1.39165 1.41857 1.10844 1.62481 1.15402 1.17090 0.82714 0.97067 1.08433 1.20536 0.96871 0.94464 1.02194 1.21158 0.92470 1.01756 1.02298 1.18036 0.94652 0.91517 0.89597 1.19711 0.92993 0.92922 1.47376 0.91025 1.26716 1.03742 0.96267 0.91666 1.69826 1.35157 1.03292 1.38821 0.85113 0.76583 0.77936 0.79479 1.18364 1.19450 1.18771 1.20919 0.95492 1.01813 1.05657 1.20527 0.92257 0.99141 0.99962 1.22919 1.01603 0.96173 0.91184 1.22718 0.80746 1.00664 0.97417 1.88011 1.21525 1.78157 1.43870 0.88971 0.91642 0.92258 0.92124 0.92467 0.90405 0.94243 0.87803 0.93022 0.87920 0.92866 0.92173 0.74984 0.74761 0.85657 0.86286 0.90539 0.88740 0.87511 0.89293 0.94387 0.87598 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.85 71.98 0.64 -0.70 16 2 C 0.11 1.42 1.11 -10.76 -0.01 1.41 16 3 C -0.16 -2.04 8.17 71.98 0.59 -1.45 16 4 C 0.03 0.42 4.32 86.32 0.37 0.79 16 5 N -0.53 -7.96 4.24 -895.25 -3.80 -11.76 16 6 C 0.06 0.76 5.39 86.30 0.47 1.23 16 7 C 0.14 2.90 4.94 86.38 0.43 3.33 16 8 N -0.73 -16.01 5.56 -478.55 -2.66 -18.67 16 9 C 0.69 23.53 8.40 179.05 1.50 25.03 16 10 O -0.62 -27.73 13.76 -3.95 -0.05 -27.78 16 11 N -0.66 -21.77 5.31 -316.78 -1.68 -23.45 16 12 C 0.04 1.81 6.31 38.56 0.24 2.05 16 13 C -0.12 -5.40 9.90 22.14 0.22 -5.18 16 14 C -0.16 -8.25 8.62 22.48 0.19 -8.05 16 15 C 0.06 3.61 5.55 -21.28 -0.12 3.49 16 16 C -0.50 -27.88 9.02 23.39 0.21 -27.67 16 17 H 0.07 3.87 7.85 -2.91 -0.02 3.85 16 18 C 0.03 1.44 5.42 85.24 0.46 1.90 16 19 N -0.84 -45.01 10.60 21.82 0.23 -44.78 16 20 Si 0.99 39.70 29.56 68.60 2.03 41.73 16 21 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 22 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 23 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 24 C -0.22 -11.65 9.74 22.48 0.22 -11.43 16 25 C -0.10 -4.87 8.61 22.13 0.19 -4.68 16 26 C 0.01 0.16 4.94 86.31 0.43 0.58 16 27 C 0.06 0.99 6.61 72.01 0.48 1.46 16 28 O -0.40 -7.22 10.28 -148.98 -1.53 -8.75 16 29 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.92 6.12 -2.39 -0.01 0.90 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.04 0.53 8.14 -2.39 -0.02 0.52 16 36 H 0.10 0.92 8.14 -2.39 -0.02 0.91 16 37 H 0.05 0.63 8.08 -2.39 -0.02 0.61 16 38 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.05 1.28 6.28 -2.39 -0.01 1.26 16 40 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.41 5.76 8.49 -92.71 -0.79 4.97 16 42 H 0.42 9.82 8.83 -92.71 -0.82 9.00 16 43 H 0.13 4.67 8.06 -2.91 -0.02 4.64 16 44 H 0.12 6.51 6.13 -2.91 -0.02 6.49 16 45 H 0.28 13.77 8.30 -92.71 -0.77 13.00 16 46 H 0.09 4.86 8.06 -2.91 -0.02 4.84 16 47 H 0.11 5.29 6.22 -2.91 -0.02 5.28 16 48 H 0.09 1.63 6.05 -2.38 -0.01 1.62 16 49 H 0.04 0.68 8.14 -2.39 -0.02 0.67 16 50 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.06 1.01 6.49 -2.38 -0.02 1.00 16 Total: -1.00 -71.68 401.05 -1.62 -73.30 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: -0.65 Total: 38.06 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: 6.50 Total: -17.89 kcal Atomic # 7 Polarization: -90.75 SS G_CDS: -7.91 Total: -98.66 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -1.59 Total: -36.53 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -71.68 -1.62 -73.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171226726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.826 kcal (2) G-P(sol) polarization free energy of solvation -71.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds