Wall clock time and date at job start Wed Apr 1 2020 05:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.49033 * 2 1 4 4 C 1.52783 * 109.56667 * 240.06819 * 2 1 3 5 5 N 1.47078 * 108.76803 * 186.36838 * 4 2 1 6 6 C 1.34778 * 120.87976 * 231.12460 * 5 4 2 7 7 O 1.21590 * 120.00504 * 354.72233 * 6 5 4 8 8 N 1.34780 * 120.00036 * 175.00102 * 6 5 4 9 9 C 1.39960 * 120.00247 * 183.97494 * 8 6 5 10 10 C 1.39277 * 119.94398 * 33.43599 * 9 8 6 11 11 C 1.38492 * 120.43012 * 179.76111 * 10 9 8 12 12 C 1.37694 * 120.31520 * 0.51681 * 11 10 9 13 13 C 1.40735 * 119.88391 * 359.74658 * 12 11 10 14 14 C 1.41411 * 120.20836 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99730 * 142.39497 * 14 13 12 16 16 C 1.39931 * 120.00047 * 322.39483 * 14 13 12 17 17 N 1.30821 * 119.99774 * 165.68158 * 16 14 13 18 18 Si 1.86795 * 119.99851 * 345.68407 * 16 14 13 19 19 H 1.48510 * 109.47243 * 85.35141 * 18 16 14 20 20 H 1.48498 * 109.47216 * 205.35032 * 18 16 14 21 21 H 1.48496 * 109.47421 * 325.35235 * 18 16 14 22 22 C 1.38234 * 119.94429 * 213.71467 * 9 8 6 23 23 C 1.47079 * 118.23678 * 50.84871 * 5 4 2 24 24 C 1.53234 * 108.52363 * 309.08917 * 23 5 4 25 25 N 1.46898 * 109.49724 * 120.05722 * 2 1 3 26 26 C 1.46904 * 110.99707 * 307.21441 * 25 2 1 27 27 C 1.52994 * 109.47084 * 158.97401 * 26 25 2 28 28 O 1.42899 * 109.47580 * 67.26995 * 27 26 25 29 29 H 1.09002 * 109.47362 * 308.01939 * 1 2 3 30 30 H 1.09001 * 109.47564 * 68.02120 * 1 2 3 31 31 H 1.09000 * 109.46880 * 188.01905 * 1 2 3 32 32 H 1.09010 * 109.46889 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.46948 * 300.05186 * 3 2 1 34 34 H 1.08990 * 109.47177 * 60.05718 * 3 2 1 35 35 H 1.09001 * 109.55852 * 66.55232 * 4 2 1 36 36 H 1.08996 * 109.45798 * 306.12323 * 4 2 1 37 37 H 0.96999 * 119.99538 * 3.97597 * 8 6 5 38 38 H 1.08006 * 119.78898 * 0.02562 * 10 9 8 39 39 H 1.08000 * 119.84738 * 180.26074 * 11 10 9 40 40 H 1.07996 * 120.05319 * 179.76477 * 12 11 10 41 41 H 0.97001 * 119.99659 * 179.97438 * 17 16 14 42 42 H 1.07997 * 120.16482 * 359.95708 * 22 9 8 43 43 H 1.09002 * 109.62317 * 68.80244 * 23 5 4 44 44 H 1.09005 * 109.62510 * 189.37770 * 23 5 4 45 45 H 1.08998 * 109.49433 * 173.78908 * 24 23 5 46 46 H 1.09000 * 109.49515 * 293.87394 * 24 23 5 47 47 H 1.09000 * 109.46607 * 278.97564 * 26 25 2 48 48 H 1.08995 * 109.47303 * 38.96857 * 26 25 2 49 49 H 1.08998 * 109.46983 * 187.26880 * 27 26 25 50 50 H 1.09003 * 109.47506 * 307.26379 * 27 26 25 51 51 H 0.96697 * 114.00574 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0404 1.4424 0.0000 4 6 2.0416 -0.7183 -1.2476 5 7 3.5042 -0.8434 -1.1552 6 6 4.2976 -0.4494 -2.1710 7 8 3.8047 -0.0733 -3.2169 8 7 5.6377 -0.4777 -2.0294 9 6 6.4599 0.0090 -3.0520 10 6 6.0374 1.0827 -3.8321 11 6 6.8450 1.5756 -4.8435 12 6 8.0711 1.0020 -5.0957 13 6 8.5088 -0.0871 -4.3191 14 6 9.7670 -0.6811 -4.5719 15 1 10.3747 -1.0292 -3.7497 16 6 10.2246 -0.8177 -5.8872 17 7 11.4812 -1.1005 -6.1164 18 14 9.0413 -0.5964 -7.3155 19 1 8.9433 0.8453 -7.6582 20 1 9.5395 -1.3522 -8.4927 21 1 7.7006 -1.1061 -6.9312 22 6 7.6875 -0.5803 -3.2899 23 6 4.0782 -1.4040 0.0774 24 6 3.4867 -0.6533 1.2752 25 7 2.0202 -0.6936 1.1985 26 6 1.4140 -0.1354 2.4147 27 6 1.5096 -1.1587 3.5480 28 8 2.8795 -1.3392 3.9127 29 1 -0.3634 0.6330 0.8096 30 1 -0.3634 0.3846 -0.9530 31 1 -0.3633 -1.0176 0.1434 32 1 3.1305 1.4420 -0.0005 33 1 1.6765 1.9565 -0.8895 34 1 1.6782 1.9560 0.8904 35 1 1.7787 -0.1416 -2.1344 36 1 1.5924 -1.7097 -1.3057 37 1 6.0322 -0.8355 -1.2187 38 1 5.0755 1.5367 -3.6444 39 1 6.5099 2.4113 -5.4399 40 1 8.6958 1.3873 -5.8879 41 1 11.7983 -1.1956 -7.0282 42 1 8.0143 -1.4154 -2.6880 43 1 3.8284 -2.4626 0.1490 44 1 5.1611 -1.2804 0.0662 45 1 3.8158 -1.1271 2.2000 46 1 3.8235 0.3832 1.2572 47 1 1.9435 0.7736 2.7002 48 1 0.3668 0.0989 2.2240 49 1 0.9484 -0.7991 4.4105 50 1 1.0940 -2.1097 3.2150 51 1 3.0156 -1.9758 4.6277 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590854493.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:50 Heat of formation + Delta-G solvation = -27.126482 kcal Electronic energy + Delta-G solvation = -31525.551272 eV Core-core repulsion = 27425.528200 eV Total energy + Delta-G solvation = -4100.023073 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.90239 -39.40264 -37.61454 -36.99857 -34.91935 -34.46976 -33.27921 -32.96346 -30.37930 -30.17088 -28.77800 -27.62199 -27.46137 -26.03496 -25.03735 -23.05459 -22.38074 -21.48297 -21.03350 -19.62132 -18.65343 -18.28027 -17.89971 -17.51168 -16.30950 -15.99315 -15.71690 -15.60717 -15.47537 -15.05788 -14.74058 -14.51253 -14.33044 -13.85333 -13.82780 -13.64556 -13.45158 -13.27391 -12.74194 -12.65525 -12.61515 -12.29248 -12.21573 -12.00089 -11.92156 -11.88956 -11.49314 -11.38538 -11.37155 -11.10751 -11.05256 -10.97511 -10.88751 -10.41084 -10.24896 -10.03829 -9.68708 -9.61132 -9.21605 -9.03596 -8.78111 -8.38068 -7.57393 -7.06419 -6.79683 -4.41983 2.48708 2.67839 2.77644 3.21932 3.28980 3.40071 3.49377 3.58432 3.87393 4.06159 4.10375 4.47947 4.59454 4.62536 4.64195 4.78636 4.89912 4.95434 4.98825 5.09395 5.10668 5.26098 5.31732 5.40293 5.41193 5.49413 5.55610 5.59221 5.64221 5.73438 5.77898 5.83620 5.92894 6.05696 6.08811 6.38780 6.40010 6.52009 6.59816 6.71425 6.79167 6.82755 6.84791 7.07255 7.25681 7.35110 7.42909 7.59810 7.75067 7.94288 8.13236 8.25305 8.45123 8.69653 8.86856 8.92911 10.23944 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021574 B = 0.002413 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.533569 B =11598.964302 C =12342.938165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.089 3.911 3 C -0.176 4.176 4 C 0.149 3.851 5 N -0.632 5.632 6 C 0.705 3.295 7 O -0.571 6.571 8 N -0.682 5.682 9 C 0.181 3.819 10 C -0.221 4.221 11 C -0.073 4.073 12 C -0.239 4.239 13 C 0.108 3.892 14 C -0.460 4.460 15 H 0.090 0.910 16 C 0.087 3.913 17 N -0.823 5.823 18 Si 0.907 3.093 19 H -0.266 1.266 20 H -0.292 1.292 21 H -0.250 1.250 22 C -0.224 4.224 23 C 0.115 3.885 24 C 0.032 3.968 25 N -0.520 5.520 26 C 0.046 3.954 27 C 0.082 3.918 28 O -0.570 6.570 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.397 0.603 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.282 0.718 42 H 0.103 0.897 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.114 0.886 46 H 0.040 0.960 47 H 0.043 0.957 48 H 0.093 0.907 49 H 0.045 0.955 50 H 0.055 0.945 51 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.975 -0.467 19.046 28.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.002 4.002 3 C -0.234 4.234 4 C 0.025 3.975 5 N -0.370 5.370 6 C 0.408 3.592 7 O -0.447 6.447 8 N -0.331 5.331 9 C 0.088 3.912 10 C -0.242 4.242 11 C -0.092 4.092 12 C -0.258 4.258 13 C 0.104 3.896 14 C -0.490 4.490 15 H 0.108 0.892 16 C -0.130 4.130 17 N -0.448 5.448 18 Si 0.733 3.267 19 H -0.192 1.192 20 H -0.219 1.219 21 H -0.173 1.173 22 C -0.246 4.246 23 C -0.009 4.009 24 C -0.097 4.097 25 N -0.244 5.244 26 C -0.082 4.082 27 C 0.004 3.996 28 O -0.376 6.376 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.234 0.766 38 H 0.127 0.873 39 H 0.115 0.885 40 H 0.123 0.877 41 H 0.093 0.907 42 H 0.122 0.878 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.132 0.868 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.111 0.889 49 H 0.064 0.936 50 H 0.073 0.927 51 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -21.174 -0.323 17.636 27.558 hybrid contribution 0.026 0.292 0.318 0.433 sum -21.148 -0.031 17.954 27.742 Atomic orbital electron populations 1.21906 0.93062 1.02661 1.02252 1.21427 0.95346 0.92298 0.91094 1.22417 1.02360 0.96649 1.02023 1.21416 0.78382 1.00656 0.97010 1.47301 1.06392 1.67110 1.16217 1.15838 0.81389 0.78640 0.83371 1.90925 1.73802 1.53555 1.26406 1.42828 1.04188 1.65468 1.20573 1.17364 0.90386 0.93650 0.89776 1.20437 1.01299 1.00362 1.02130 1.20552 0.94035 0.98163 0.96412 1.21305 0.98374 1.00402 1.05755 1.17509 0.91926 0.89957 0.90193 1.19313 1.00091 1.35635 0.93975 0.89243 1.25996 0.95051 0.91586 1.00371 1.69667 1.14918 1.36840 1.23403 0.86412 0.82110 0.79035 0.79134 1.19153 1.21893 1.17349 1.20854 0.95045 1.02737 1.05959 1.21750 0.97447 0.98295 0.83359 1.22822 0.87258 0.99839 0.99745 1.62186 1.06913 1.54223 1.01110 1.22299 1.00530 0.95850 0.89510 1.22225 0.82779 0.98968 0.95645 1.86460 1.26090 1.66878 1.58162 0.92201 0.91551 0.91350 0.91920 0.91791 0.92890 0.88639 0.91277 0.76628 0.87255 0.88453 0.87675 0.90724 0.87849 0.90683 0.90298 0.86786 0.94187 0.93853 0.88916 0.93632 0.92709 0.77671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 7.83 37.16 0.29 -0.69 16 2 C 0.09 0.82 0.68 -131.71 -0.09 0.73 16 3 C -0.18 -1.81 7.70 37.16 0.29 -1.52 16 4 C 0.15 1.76 5.21 -3.84 -0.02 1.74 16 5 N -0.63 -8.49 2.49 -178.47 -0.44 -8.94 16 6 C 0.71 12.60 8.06 -86.91 -0.70 11.90 16 7 O -0.57 -12.37 13.46 5.29 0.07 -12.30 16 8 N -0.68 -12.21 5.26 -14.27 -0.08 -12.29 16 9 C 0.18 3.99 6.27 -83.76 -0.53 3.47 16 10 C -0.22 -5.09 8.66 -39.10 -0.34 -5.42 16 11 C -0.07 -1.68 10.02 -39.69 -0.40 -2.08 16 12 C -0.24 -5.96 7.29 -38.84 -0.28 -6.24 16 13 C 0.11 2.79 4.92 -106.85 -0.53 2.26 16 14 C -0.46 -12.71 9.55 -37.74 -0.36 -13.07 16 15 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 16 C 0.09 2.35 5.42 -17.35 -0.09 2.25 16 17 N -0.82 -22.62 13.93 55.55 0.77 -21.84 16 18 Si 0.91 21.82 24.87 -169.99 -4.23 17.60 16 19 H -0.27 -6.19 6.39 56.52 0.36 -5.83 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.25 -6.29 7.11 56.52 0.40 -5.89 16 22 C -0.22 -5.28 9.70 -38.69 -0.38 -5.66 16 23 C 0.12 1.22 6.60 -3.61 -0.02 1.19 16 24 C 0.03 0.30 5.01 -3.70 -0.02 0.28 16 25 N -0.52 -4.53 4.34 -218.96 -0.95 -5.48 16 26 C 0.05 0.33 4.57 -3.82 -0.02 0.31 16 27 C 0.08 0.47 7.36 37.15 0.27 0.74 16 28 O -0.57 -3.69 10.82 -35.23 -0.38 -4.07 16 29 H 0.06 0.35 6.37 -51.93 -0.33 0.02 16 30 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.78 5.93 -51.92 -0.31 0.47 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.48 7.10 -51.93 -0.37 0.11 16 35 H 0.10 1.28 7.10 -51.93 -0.37 0.91 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.40 5.79 6.30 -40.82 -0.26 5.53 16 38 H 0.11 2.50 6.37 -52.48 -0.33 2.17 16 39 H 0.10 1.99 8.06 -52.49 -0.42 1.56 16 40 H 0.11 2.61 5.24 -52.49 -0.27 2.34 16 41 H 0.28 7.09 8.30 -40.82 -0.34 6.75 16 42 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.08 0.78 5.63 -51.93 -0.29 0.49 16 45 H 0.11 1.06 5.23 -51.93 -0.27 0.79 16 46 H 0.04 0.44 6.10 -51.93 -0.32 0.12 16 47 H 0.04 0.36 7.45 -51.93 -0.39 -0.03 16 48 H 0.09 0.54 5.35 -51.93 -0.28 0.26 16 49 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 50 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.38 0.95 9.12 45.56 0.42 1.36 16 LS Contribution 383.35 15.07 5.78 5.78 Total: -1.00 -32.72 383.35 -9.15 -41.87 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -6.77 Total: 9.47 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -2.92 Total: -9.80 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.70 Total: -48.55 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.31 Total: -16.37 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.23 Total: 17.60 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.72 -9.15 -41.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590854493.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.741 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds