Wall clock time and date at job start Wed Apr 1 2020 05:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.49033 * 2 1 4 4 C 1.52783 * 109.56667 * 240.06819 * 2 1 3 5 5 N 1.47078 * 108.76803 * 186.36838 * 4 2 1 6 6 C 1.34778 * 120.87976 * 231.12460 * 5 4 2 7 7 O 1.21590 * 120.00504 * 354.72233 * 6 5 4 8 8 N 1.34780 * 120.00036 * 175.00102 * 6 5 4 9 9 C 1.39960 * 120.00247 * 183.97494 * 8 6 5 10 10 C 1.39277 * 119.94398 * 33.43599 * 9 8 6 11 11 C 1.38492 * 120.43012 * 179.76111 * 10 9 8 12 12 C 1.37694 * 120.31520 * 0.51681 * 11 10 9 13 13 C 1.40735 * 119.88391 * 359.74658 * 12 11 10 14 14 C 1.41411 * 120.20836 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99730 * 142.39497 * 14 13 12 16 16 C 1.39931 * 120.00047 * 322.39483 * 14 13 12 17 17 N 1.30821 * 119.99774 * 165.68158 * 16 14 13 18 18 Si 1.86795 * 119.99851 * 345.68407 * 16 14 13 19 19 H 1.48510 * 109.47243 * 85.35141 * 18 16 14 20 20 H 1.48498 * 109.47216 * 205.35032 * 18 16 14 21 21 H 1.48496 * 109.47421 * 325.35235 * 18 16 14 22 22 C 1.38234 * 119.94429 * 213.71467 * 9 8 6 23 23 C 1.47079 * 118.23678 * 50.84871 * 5 4 2 24 24 C 1.53234 * 108.52363 * 309.08917 * 23 5 4 25 25 N 1.46898 * 109.49724 * 120.05722 * 2 1 3 26 26 C 1.46904 * 110.99707 * 307.21441 * 25 2 1 27 27 C 1.52994 * 109.47084 * 158.97401 * 26 25 2 28 28 O 1.42899 * 109.47580 * 67.26995 * 27 26 25 29 29 H 1.09002 * 109.47362 * 308.01939 * 1 2 3 30 30 H 1.09001 * 109.47564 * 68.02120 * 1 2 3 31 31 H 1.09000 * 109.46880 * 188.01905 * 1 2 3 32 32 H 1.09010 * 109.46889 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.46948 * 300.05186 * 3 2 1 34 34 H 1.08990 * 109.47177 * 60.05718 * 3 2 1 35 35 H 1.09001 * 109.55852 * 66.55232 * 4 2 1 36 36 H 1.08996 * 109.45798 * 306.12323 * 4 2 1 37 37 H 0.96999 * 119.99538 * 3.97597 * 8 6 5 38 38 H 1.08006 * 119.78898 * 0.02562 * 10 9 8 39 39 H 1.08000 * 119.84738 * 180.26074 * 11 10 9 40 40 H 1.07996 * 120.05319 * 179.76477 * 12 11 10 41 41 H 0.97001 * 119.99659 * 179.97438 * 17 16 14 42 42 H 1.07997 * 120.16482 * 359.95708 * 22 9 8 43 43 H 1.09002 * 109.62317 * 68.80244 * 23 5 4 44 44 H 1.09005 * 109.62510 * 189.37770 * 23 5 4 45 45 H 1.08998 * 109.49433 * 173.78908 * 24 23 5 46 46 H 1.09000 * 109.49515 * 293.87394 * 24 23 5 47 47 H 1.09000 * 109.46607 * 278.97564 * 26 25 2 48 48 H 1.08995 * 109.47303 * 38.96857 * 26 25 2 49 49 H 1.08998 * 109.46983 * 187.26880 * 27 26 25 50 50 H 1.09003 * 109.47506 * 307.26379 * 27 26 25 51 51 H 0.96697 * 114.00574 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0404 1.4424 0.0000 4 6 2.0416 -0.7183 -1.2476 5 7 3.5042 -0.8434 -1.1552 6 6 4.2976 -0.4494 -2.1710 7 8 3.8047 -0.0733 -3.2169 8 7 5.6377 -0.4777 -2.0294 9 6 6.4599 0.0090 -3.0520 10 6 6.0374 1.0827 -3.8321 11 6 6.8450 1.5756 -4.8435 12 6 8.0711 1.0020 -5.0957 13 6 8.5088 -0.0871 -4.3191 14 6 9.7670 -0.6811 -4.5719 15 1 10.3747 -1.0292 -3.7497 16 6 10.2246 -0.8177 -5.8872 17 7 11.4812 -1.1005 -6.1164 18 14 9.0413 -0.5964 -7.3155 19 1 8.9433 0.8453 -7.6582 20 1 9.5395 -1.3522 -8.4927 21 1 7.7006 -1.1061 -6.9312 22 6 7.6875 -0.5803 -3.2899 23 6 4.0782 -1.4040 0.0774 24 6 3.4867 -0.6533 1.2752 25 7 2.0202 -0.6936 1.1985 26 6 1.4140 -0.1354 2.4147 27 6 1.5096 -1.1587 3.5480 28 8 2.8795 -1.3392 3.9127 29 1 -0.3634 0.6330 0.8096 30 1 -0.3634 0.3846 -0.9530 31 1 -0.3633 -1.0176 0.1434 32 1 3.1305 1.4420 -0.0005 33 1 1.6765 1.9565 -0.8895 34 1 1.6782 1.9560 0.8904 35 1 1.7787 -0.1416 -2.1344 36 1 1.5924 -1.7097 -1.3057 37 1 6.0322 -0.8355 -1.2187 38 1 5.0755 1.5367 -3.6444 39 1 6.5099 2.4113 -5.4399 40 1 8.6958 1.3873 -5.8879 41 1 11.7983 -1.1956 -7.0282 42 1 8.0143 -1.4154 -2.6880 43 1 3.8284 -2.4626 0.1490 44 1 5.1611 -1.2804 0.0662 45 1 3.8158 -1.1271 2.2000 46 1 3.8235 0.3832 1.2572 47 1 1.9435 0.7736 2.7002 48 1 0.3668 0.0989 2.2240 49 1 0.9484 -0.7991 4.4105 50 1 1.0940 -2.1097 3.2150 51 1 3.0156 -1.9758 4.6277 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590854493.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:49 Heat of formation + Delta-G solvation = -50.797735 kcal Electronic energy + Delta-G solvation = -31526.577735 eV Core-core repulsion = 27425.528200 eV Total energy + Delta-G solvation = -4101.049535 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.04695 -40.58872 -39.21980 -37.62900 -36.21080 -35.95377 -34.94664 -33.93533 -32.17272 -31.15041 -30.36215 -28.32900 -28.27017 -27.15440 -26.90834 -24.00775 -23.38178 -22.89817 -22.63796 -21.07281 -19.77226 -19.51074 -19.10935 -18.38107 -17.75824 -17.38919 -16.87631 -16.78643 -16.44232 -16.30692 -16.06228 -15.72428 -15.65714 -15.27602 -14.92646 -14.58692 -14.50433 -14.40540 -14.21718 -14.09639 -13.87104 -13.51007 -13.33198 -13.10450 -12.99756 -12.88368 -12.81716 -12.67088 -12.60640 -12.35078 -12.14328 -12.09267 -11.91767 -11.73763 -11.71123 -11.58678 -11.33462 -10.97222 -10.91294 -10.68856 -9.80163 -9.50265 -9.22761 -8.84509 -8.81609 -6.50944 0.67510 0.76605 1.28667 1.38911 1.47266 1.51142 2.04638 2.15513 2.66443 2.79523 2.83056 3.44303 3.49303 3.68757 3.85373 3.90690 4.02148 4.16770 4.25503 4.27928 4.37422 4.43902 4.48608 4.53736 4.59346 4.62972 4.63303 4.67214 4.76720 4.78215 4.83990 4.91385 4.93059 4.97112 4.98119 5.01087 5.01965 5.16923 5.21921 5.31928 5.35406 5.47564 5.58369 5.65035 5.78688 5.91598 5.95816 6.09886 6.15325 6.25407 6.40517 6.70318 6.82762 6.87587 7.01887 7.45400 8.25849 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021574 B = 0.002413 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.533569 B =11598.964302 C =12342.938165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.094 3.906 3 C -0.171 4.171 4 C 0.144 3.856 5 N -0.621 5.621 6 C 0.702 3.298 7 O -0.612 6.612 8 N -0.676 5.676 9 C 0.189 3.811 10 C -0.220 4.220 11 C -0.073 4.073 12 C -0.251 4.251 13 C 0.090 3.910 14 C -0.488 4.488 15 H 0.062 0.938 16 C 0.053 3.947 17 N -0.857 5.857 18 Si 0.955 3.045 19 H -0.252 1.252 20 H -0.275 1.275 21 H -0.268 1.268 22 C -0.229 4.229 23 C 0.111 3.889 24 C 0.040 3.960 25 N -0.517 5.517 26 C 0.043 3.957 27 C 0.084 3.916 28 O -0.590 6.590 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.037 0.963 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.413 0.587 38 H 0.113 0.887 39 H 0.127 0.873 40 H 0.104 0.896 41 H 0.291 0.709 42 H 0.114 0.886 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.123 0.877 46 H 0.025 0.975 47 H 0.031 0.969 48 H 0.109 0.891 49 H 0.064 0.936 50 H 0.057 0.943 51 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.765 -0.504 20.515 31.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.004 3.996 3 C -0.230 4.230 4 C 0.021 3.979 5 N -0.357 5.357 6 C 0.404 3.596 7 O -0.491 6.491 8 N -0.325 5.325 9 C 0.094 3.906 10 C -0.241 4.241 11 C -0.092 4.092 12 C -0.271 4.271 13 C 0.087 3.913 14 C -0.519 4.519 15 H 0.080 0.920 16 C -0.160 4.160 17 N -0.485 5.485 18 Si 0.779 3.221 19 H -0.177 1.177 20 H -0.201 1.201 21 H -0.192 1.192 22 C -0.251 4.251 23 C -0.012 4.012 24 C -0.089 4.089 25 N -0.242 5.242 26 C -0.084 4.084 27 C 0.006 3.994 28 O -0.399 6.399 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.253 0.747 38 H 0.131 0.869 39 H 0.145 0.855 40 H 0.122 0.878 41 H 0.102 0.898 42 H 0.132 0.868 43 H 0.107 0.893 44 H 0.103 0.897 45 H 0.140 0.860 46 H 0.043 0.957 47 H 0.050 0.950 48 H 0.127 0.873 49 H 0.082 0.918 50 H 0.076 0.924 51 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -23.980 -0.386 19.187 30.714 hybrid contribution 0.730 0.313 0.073 0.798 sum -23.250 -0.074 19.260 30.191 Atomic orbital electron populations 1.21882 0.90853 1.03607 1.03023 1.21376 0.96882 0.91084 0.90266 1.22373 1.00683 0.97641 1.02261 1.21596 0.77227 1.01301 0.97758 1.47351 1.06846 1.65691 1.15861 1.15981 0.81292 0.78531 0.83775 1.90891 1.74423 1.55451 1.28353 1.42665 1.04215 1.65341 1.20304 1.17358 0.90178 0.92928 0.90097 1.20669 1.01225 1.00266 1.01945 1.20860 0.93206 0.98640 0.96464 1.21369 0.99213 1.00553 1.05965 1.17651 0.91802 0.90459 0.91406 1.19312 1.01149 1.37599 0.93837 0.91988 1.26573 0.96163 0.91296 1.01961 1.69689 1.15947 1.38424 1.24447 0.85669 0.79326 0.79807 0.77277 1.17701 1.20127 1.19249 1.20976 0.95436 1.03149 1.05555 1.21991 0.97867 0.98988 0.82319 1.22730 0.88007 0.98770 0.99354 1.62231 1.06238 1.54124 1.01590 1.22437 1.01075 0.95818 0.89088 1.22220 0.82724 0.98671 0.95740 1.86388 1.26599 1.67716 1.59170 0.90577 0.91482 0.90518 0.94366 0.92656 0.91503 0.90545 0.90204 0.74722 0.86939 0.85506 0.87779 0.89834 0.86758 0.89347 0.89734 0.85969 0.95711 0.95049 0.87285 0.91813 0.92424 0.75729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 7.83 71.98 0.56 -0.96 16 2 C 0.09 1.57 0.68 3.46 0.00 1.58 16 3 C -0.17 -3.33 7.70 71.98 0.55 -2.77 16 4 C 0.14 3.22 5.21 86.20 0.45 3.67 16 5 N -0.62 -15.98 2.49 -836.82 -2.08 -18.06 16 6 C 0.70 24.57 8.06 179.05 1.44 26.02 16 7 O -0.61 -26.34 13.46 -4.00 -0.05 -26.39 16 8 N -0.68 -23.56 5.26 -317.32 -1.67 -25.23 16 9 C 0.19 8.21 6.27 38.09 0.24 8.45 16 10 C -0.22 -9.89 8.66 22.58 0.20 -9.70 16 11 C -0.07 -3.28 10.02 22.20 0.22 -3.06 16 12 C -0.25 -12.46 7.29 22.75 0.17 -12.29 16 13 C 0.09 4.72 4.92 -21.31 -0.10 4.61 16 14 C -0.49 -27.86 9.55 23.46 0.22 -27.63 16 15 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 16 C 0.05 2.94 5.42 85.25 0.46 3.40 16 17 N -0.86 -48.17 13.93 21.82 0.30 -47.86 16 18 Si 0.96 45.01 24.87 68.60 1.71 46.72 16 19 H -0.25 -11.22 6.39 99.48 0.64 -10.58 16 20 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.27 -13.31 7.11 99.48 0.71 -12.61 16 22 C -0.23 -10.82 9.70 22.85 0.22 -10.60 16 23 C 0.11 2.14 6.60 86.35 0.57 2.71 16 24 C 0.04 0.69 5.01 86.38 0.43 1.13 16 25 N -0.52 -7.78 4.34 -846.66 -3.68 -11.45 16 26 C 0.04 0.49 4.57 86.30 0.39 0.89 16 27 C 0.08 0.71 7.36 71.98 0.53 1.24 16 28 O -0.59 -6.12 10.82 -148.98 -1.61 -7.73 16 29 H 0.08 0.63 6.37 -2.39 -0.02 0.62 16 30 H 0.07 0.77 8.13 -2.39 -0.02 0.75 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.04 0.93 5.93 -2.38 -0.01 0.91 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.10 7.10 -2.39 -0.02 1.08 16 35 H 0.08 2.03 7.10 -2.39 -0.02 2.01 16 36 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.41 11.53 6.30 -92.71 -0.58 10.95 16 38 H 0.11 5.04 6.37 -2.91 -0.02 5.02 16 39 H 0.13 4.88 8.06 -2.91 -0.02 4.85 16 40 H 0.10 5.12 5.24 -2.91 -0.02 5.11 16 41 H 0.29 14.81 8.30 -92.71 -0.77 14.04 16 42 H 0.11 5.03 8.06 -2.91 -0.02 5.00 16 43 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.08 1.52 5.63 -2.38 -0.01 1.51 16 45 H 0.12 2.01 5.23 -2.39 -0.01 2.00 16 46 H 0.02 0.52 6.10 -2.39 -0.01 0.50 16 47 H 0.03 0.45 7.45 -2.39 -0.02 0.43 16 48 H 0.11 0.87 5.35 -2.39 -0.01 0.86 16 49 H 0.06 0.32 8.14 -2.39 -0.02 0.31 16 50 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 51 H 0.39 0.99 9.12 -74.06 -0.68 0.31 16 Total: -1.00 -71.58 383.35 -0.87 -72.45 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: -0.35 Total: 30.90 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: 6.56 Total: -13.33 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -7.12 Total: -102.61 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -1.67 Total: -34.12 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.71 Total: 46.72 kcal Total: -71.58 -0.87 -72.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590854493.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.657 kcal (2) G-P(sol) polarization free energy of solvation -71.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds