Wall clock time and date at job start Wed Apr 1 2020 05:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.51415 * 2 1 4 4 C 1.53237 * 109.49134 * 239.93229 * 2 1 3 5 5 N 1.47076 * 108.52458 * 186.21104 * 4 2 1 6 6 C 1.34771 * 120.88515 * 231.16888 * 5 4 2 7 7 O 1.21591 * 119.99770 * 354.23888 * 6 5 4 8 8 N 1.34774 * 120.00762 * 174.24129 * 6 5 4 9 9 C 1.39238 * 120.00590 * 184.79169 * 8 6 5 10 10 C 1.39480 * 119.83233 * 212.92932 * 9 8 6 11 11 C 1.36379 * 120.16423 * 179.76440 * 10 9 8 12 12 C 1.40866 * 119.82844 * 0.52725 * 11 10 9 13 13 C 1.41163 * 120.16209 * 179.70019 * 12 11 10 14 14 H 1.07995 * 119.99715 * 164.07507 * 13 12 11 15 15 C 1.39888 * 119.99944 * 344.07656 * 13 12 11 16 16 N 1.30876 * 120.00211 * 325.56925 * 15 13 12 17 17 Si 1.86803 * 119.99937 * 145.57696 * 15 13 12 18 18 H 1.48493 * 109.47243 * 94.99213 * 17 15 13 19 19 H 1.48503 * 109.46973 * 214.98810 * 17 15 13 20 20 H 1.48502 * 109.46953 * 334.98536 * 17 15 13 21 21 C 1.40862 * 119.67353 * 359.72499 * 12 11 10 22 22 C 1.36377 * 119.83116 * 359.97438 * 21 12 11 23 23 C 1.47080 * 118.23576 * 51.18635 * 5 4 2 24 24 C 1.53245 * 108.52007 * 308.81314 * 23 5 4 25 25 N 1.46900 * 109.49251 * 120.06957 * 2 1 3 26 26 C 1.46897 * 110.99883 * 307.20883 * 25 2 1 27 27 C 1.53003 * 109.47030 * 169.63381 * 26 25 2 28 28 O 1.42898 * 109.47253 * 73.56623 * 27 26 25 29 29 H 1.09003 * 109.46809 * 299.93326 * 1 2 3 30 30 H 1.08991 * 109.46933 * 59.93039 * 1 2 3 31 31 H 1.08999 * 109.47471 * 179.97438 * 1 2 3 32 32 H 1.09011 * 109.46563 * 186.11718 * 3 2 1 33 33 H 1.08996 * 109.47509 * 306.11720 * 3 2 1 34 34 H 1.09000 * 109.47343 * 66.12580 * 3 2 1 35 35 H 1.09005 * 109.62441 * 66.50204 * 4 2 1 36 36 H 1.09000 * 109.62984 * 305.92650 * 4 2 1 37 37 H 0.97003 * 119.99122 * 4.79053 * 8 6 5 38 38 H 1.07997 * 119.91749 * 359.97438 * 10 9 8 39 39 H 1.08005 * 120.08696 * 180.25454 * 11 10 9 40 40 H 0.97002 * 120.00398 * 179.97438 * 16 15 13 41 41 H 1.08005 * 120.08732 * 179.97438 * 21 12 11 42 42 H 1.07999 * 119.91584 * 179.97438 * 22 21 12 43 43 H 1.09002 * 109.62853 * 189.10962 * 23 5 4 44 44 H 1.08991 * 109.79278 * 68.61841 * 23 5 4 45 45 H 1.08994 * 109.49785 * 293.87554 * 24 23 5 46 46 H 1.09002 * 109.49096 * 173.78447 * 24 23 5 47 47 H 1.08999 * 109.47449 * 49.63690 * 26 25 2 48 48 H 1.08995 * 109.47318 * 289.63349 * 26 25 2 49 49 H 1.09000 * 109.47123 * 193.57205 * 27 26 25 50 50 H 1.09006 * 109.47106 * 313.56851 * 27 26 25 51 51 H 0.96701 * 114.00109 * 184.90129 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 6 2.0413 -0.7238 -1.2502 5 7 3.5042 -0.8433 -1.1555 6 6 4.2976 -0.4495 -2.1712 7 8 3.8051 -0.0866 -3.2219 8 7 5.6371 -0.4580 -2.0224 9 6 6.4532 0.0421 -3.0337 10 6 7.7084 -0.5242 -3.2561 11 6 8.5113 -0.0429 -4.2479 12 6 8.0746 1.0361 -5.0412 13 6 8.9026 1.5440 -6.0656 14 1 8.4854 2.1822 -6.8304 15 6 10.2633 1.2206 -6.0899 16 7 10.9206 1.0710 -4.9680 17 14 11.1425 1.0026 -7.7236 18 1 11.8015 2.2774 -8.1051 19 1 12.1666 -0.0652 -7.5960 20 1 10.1582 0.6220 -8.7684 21 6 6.8079 1.6061 -4.8071 22 6 6.0136 1.1101 -3.8157 23 6 4.0781 -1.4043 0.0770 24 6 3.4867 -0.6537 1.2750 25 7 2.0202 -0.6939 1.1984 26 6 1.4141 -0.1359 2.4146 27 6 1.7407 -1.0374 3.6070 28 8 3.1122 -0.8681 3.9706 29 1 -0.3633 0.5128 0.8906 30 1 -0.3633 0.5149 -0.8893 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1257 1.4431 -0.1095 33 1 1.5916 1.9869 -0.8301 34 1 1.7705 1.9235 0.9397 35 1 1.7776 -0.1502 -2.1388 36 1 1.5956 -1.7169 -1.3063 37 1 6.0326 -0.8125 -1.2107 38 1 8.0438 -1.3480 -2.6436 39 1 9.4813 -0.4849 -4.4217 40 1 11.8641 0.8463 -4.9849 41 1 6.4666 2.4339 -5.4111 42 1 5.0423 1.5463 -3.6347 43 1 5.1611 -1.2807 0.0659 44 1 3.8312 -2.4633 0.1504 45 1 3.8235 0.3828 1.2573 46 1 3.8157 -1.1278 2.1997 47 1 0.3330 -0.0782 2.2883 48 1 1.8127 0.8625 2.5941 49 1 1.1052 -0.7684 4.4507 50 1 1.5627 -2.0779 3.3353 51 1 3.4097 -1.4639 4.6717 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614927940.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:54 Heat of formation + Delta-G solvation = -26.814434 kcal Electronic energy + Delta-G solvation = -31380.577309 eV Core-core repulsion = 27280.567768 eV Total energy + Delta-G solvation = -4100.009541 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.74183 -39.21227 -37.44745 -36.91666 -34.75444 -34.47408 -33.23417 -32.74681 -30.20280 -29.49348 -28.90765 -27.53300 -27.41550 -26.29948 -24.50949 -22.93990 -22.21218 -21.42609 -20.72989 -19.47258 -18.52413 -18.02245 -17.90553 -17.29728 -16.47155 -16.22272 -15.58322 -15.32581 -15.21513 -15.05006 -14.77944 -14.29048 -13.95606 -13.81405 -13.69847 -13.51078 -13.29804 -12.96137 -12.69135 -12.62136 -12.20997 -12.16533 -11.99789 -11.95330 -11.85551 -11.76933 -11.41241 -11.32247 -11.24334 -11.11191 -11.06486 -10.94441 -10.81200 -10.48079 -10.18364 -10.07784 -9.63346 -9.51346 -9.10854 -8.67752 -8.60867 -8.25346 -7.46685 -7.07522 -6.83512 -4.18105 2.70674 2.95723 3.06563 3.08715 3.17804 3.24065 3.58181 3.78027 3.91922 3.92701 4.31737 4.55549 4.58119 4.66344 4.74048 4.87367 4.95967 5.02622 5.05311 5.18211 5.19805 5.37894 5.39513 5.48623 5.54894 5.66415 5.69289 5.73647 5.77119 5.82323 5.87684 5.93755 5.98895 6.19310 6.25633 6.48131 6.58136 6.81035 6.86368 6.91339 6.99375 7.04906 7.18171 7.24675 7.35294 7.40716 7.65773 7.93798 8.03241 8.10683 8.32699 8.55730 8.62373 8.90934 8.98773 9.21233 10.03614 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023748 B = 0.002191 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.760573 B =12776.818345 C =13440.290473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.090 3.910 3 C -0.175 4.175 4 C 0.151 3.849 5 N -0.635 5.635 6 C 0.698 3.302 7 O -0.579 6.579 8 N -0.665 5.665 9 C -0.001 4.001 10 C -0.106 4.106 11 C -0.175 4.175 12 C 0.107 3.893 13 C -0.464 4.464 14 H 0.081 0.919 15 C 0.089 3.911 16 N -0.767 5.767 17 Si 0.895 3.105 18 H -0.270 1.270 19 H -0.274 1.274 20 H -0.257 1.257 21 C -0.225 4.225 22 C -0.068 4.068 23 C 0.116 3.884 24 C 0.030 3.970 25 N -0.522 5.522 26 C 0.046 3.954 27 C 0.078 3.922 28 O -0.570 6.570 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.388 0.612 38 H 0.087 0.913 39 H 0.112 0.888 40 H 0.283 0.717 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.041 0.959 46 H 0.113 0.887 47 H 0.093 0.907 48 H 0.044 0.956 49 H 0.048 0.952 50 H 0.057 0.943 51 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.750 -5.793 18.026 24.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.001 4.001 3 C -0.234 4.234 4 C 0.027 3.973 5 N -0.374 5.374 6 C 0.401 3.599 7 O -0.457 6.457 8 N -0.312 5.312 9 C -0.093 4.093 10 C -0.126 4.126 11 C -0.195 4.195 12 C 0.104 3.896 13 C -0.491 4.491 14 H 0.099 0.901 15 C -0.133 4.133 16 N -0.389 5.389 17 Si 0.718 3.282 18 H -0.195 1.195 19 H -0.199 1.199 20 H -0.181 1.181 21 C -0.245 4.245 22 C -0.088 4.088 23 C -0.008 4.008 24 C -0.099 4.099 25 N -0.247 5.247 26 C -0.082 4.082 27 C 0.000 4.000 28 O -0.376 6.376 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.224 0.776 38 H 0.105 0.895 39 H 0.130 0.870 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.120 0.880 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.059 0.941 46 H 0.130 0.870 47 H 0.111 0.889 48 H 0.062 0.938 49 H 0.066 0.934 50 H 0.075 0.925 51 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -16.046 -5.581 16.866 23.939 hybrid contribution 1.012 0.111 0.380 1.086 sum -15.034 -5.470 17.245 23.523 Atomic orbital electron populations 1.21914 0.93188 1.02673 1.02144 1.21491 0.95226 0.92321 0.91036 1.22387 1.02578 0.96647 1.01764 1.21457 0.78676 1.00322 0.96891 1.47273 1.06225 1.67592 1.16261 1.15886 0.81690 0.79084 0.83259 1.90892 1.73900 1.54699 1.26168 1.42269 1.03768 1.64992 1.20199 1.16879 0.92795 1.01405 0.98265 1.20110 0.94108 0.99036 0.99375 1.20677 1.00172 0.99653 0.98985 1.17574 0.91245 0.90077 0.90667 1.19498 0.92437 1.27424 1.09778 0.90092 1.25960 0.97940 0.91848 0.97558 1.69976 1.09953 1.30233 1.28768 0.86531 0.79273 0.78969 0.83433 1.19486 1.19894 1.18065 1.20530 0.97471 1.03793 1.02741 1.20260 0.98117 0.94223 0.96171 1.21703 0.97480 0.97954 0.83624 1.22849 0.87215 1.00169 0.99631 1.62253 1.06993 1.54246 1.01172 1.22300 1.00144 0.96706 0.89057 1.22236 0.82453 0.99634 0.95642 1.86519 1.27099 1.64615 1.59368 0.92179 0.91655 0.91509 0.91860 0.91864 0.92881 0.88717 0.91515 0.77610 0.89463 0.87023 0.90653 0.88915 0.88040 0.90403 0.91116 0.94108 0.86962 0.88878 0.93805 0.93414 0.92472 0.77579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.04 37.16 0.30 -0.81 16 2 C 0.09 0.92 0.69 -131.48 -0.09 0.83 16 3 C -0.18 -2.02 7.67 37.16 0.28 -1.74 16 4 C 0.15 1.93 5.25 -3.60 -0.02 1.91 16 5 N -0.63 -9.23 2.38 -178.19 -0.42 -9.65 16 6 C 0.70 13.42 8.04 -86.92 -0.70 12.72 16 7 O -0.58 -13.43 13.44 5.29 0.07 -13.35 16 8 N -0.66 -12.79 5.23 -14.10 -0.07 -12.86 16 9 C 0.00 -0.02 6.30 -83.57 -0.53 -0.55 16 10 C -0.11 -2.52 9.89 -39.79 -0.39 -2.91 16 11 C -0.18 -4.61 8.78 -39.26 -0.34 -4.96 16 12 C 0.11 2.95 5.63 -106.80 -0.60 2.35 16 13 C -0.46 -12.53 8.94 -37.85 -0.34 -12.87 16 14 H 0.08 2.12 8.03 -52.49 -0.42 1.70 16 15 C 0.09 2.23 4.79 -17.34 -0.08 2.15 16 16 N -0.77 -19.56 11.52 55.54 0.64 -18.92 16 17 Si 0.89 18.50 29.67 -169.99 -5.04 13.46 16 18 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 19 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 20 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 21 C -0.23 -5.95 9.74 -39.26 -0.38 -6.34 16 22 C -0.07 -1.71 8.57 -39.79 -0.34 -2.05 16 23 C 0.12 1.32 6.60 -3.60 -0.02 1.30 16 24 C 0.03 0.31 4.88 -3.70 -0.02 0.29 16 25 N -0.52 -4.92 4.42 -218.68 -0.97 -5.89 16 26 C 0.05 0.35 4.67 -3.82 -0.02 0.34 16 27 C 0.08 0.48 7.12 37.16 0.26 0.75 16 28 O -0.57 -3.93 10.75 -35.23 -0.38 -4.31 16 29 H 0.06 0.40 6.10 -51.93 -0.32 0.09 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.89 6.13 -51.92 -0.32 0.57 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.55 6.57 -51.93 -0.34 0.21 16 35 H 0.09 1.39 7.10 -51.93 -0.37 1.02 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.39 6.17 6.30 -40.82 -0.26 5.91 16 38 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 39 H 0.11 2.97 6.18 -52.48 -0.32 2.65 16 40 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 41 H 0.09 2.33 8.06 -52.48 -0.42 1.91 16 42 H 0.10 2.56 6.36 -52.49 -0.33 2.23 16 43 H 0.08 0.84 5.63 -51.93 -0.29 0.55 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.04 0.50 6.24 -51.93 -0.32 0.18 16 46 H 0.11 1.07 5.11 -51.93 -0.27 0.81 16 47 H 0.09 0.60 5.61 -51.93 -0.29 0.31 16 48 H 0.04 0.40 6.87 -51.93 -0.36 0.05 16 49 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 50 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.38 1.05 9.12 45.56 0.42 1.46 16 LS Contribution 387.10 15.07 5.83 5.83 Total: -1.00 -32.24 387.10 -10.11 -42.35 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -6.74 Total: 12.93 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -3.03 Total: -9.60 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.82 Total: -47.31 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.31 Total: -17.66 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.04 Total: 13.46 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.24 -10.11 -42.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614927940.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.538 kcal (2) G-P(sol) polarization free energy of solvation -32.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds