Wall clock time and date at job start Wed Apr 1 2020 05:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.51415 * 2 1 4 4 C 1.53237 * 109.49134 * 239.93229 * 2 1 3 5 5 N 1.47076 * 108.52458 * 186.21104 * 4 2 1 6 6 C 1.34771 * 120.88515 * 231.16888 * 5 4 2 7 7 O 1.21591 * 119.99770 * 354.23888 * 6 5 4 8 8 N 1.34774 * 120.00762 * 174.24129 * 6 5 4 9 9 C 1.39238 * 120.00590 * 184.79169 * 8 6 5 10 10 C 1.39480 * 119.83233 * 212.92932 * 9 8 6 11 11 C 1.36379 * 120.16423 * 179.76440 * 10 9 8 12 12 C 1.40866 * 119.82844 * 0.52725 * 11 10 9 13 13 C 1.41163 * 120.16209 * 179.70019 * 12 11 10 14 14 H 1.07995 * 119.99715 * 164.07507 * 13 12 11 15 15 C 1.39888 * 119.99944 * 344.07656 * 13 12 11 16 16 N 1.30876 * 120.00211 * 325.56925 * 15 13 12 17 17 Si 1.86803 * 119.99937 * 145.57696 * 15 13 12 18 18 H 1.48493 * 109.47243 * 94.99213 * 17 15 13 19 19 H 1.48503 * 109.46973 * 214.98810 * 17 15 13 20 20 H 1.48502 * 109.46953 * 334.98536 * 17 15 13 21 21 C 1.40862 * 119.67353 * 359.72499 * 12 11 10 22 22 C 1.36377 * 119.83116 * 359.97438 * 21 12 11 23 23 C 1.47080 * 118.23576 * 51.18635 * 5 4 2 24 24 C 1.53245 * 108.52007 * 308.81314 * 23 5 4 25 25 N 1.46900 * 109.49251 * 120.06957 * 2 1 3 26 26 C 1.46897 * 110.99883 * 307.20883 * 25 2 1 27 27 C 1.53003 * 109.47030 * 169.63381 * 26 25 2 28 28 O 1.42898 * 109.47253 * 73.56623 * 27 26 25 29 29 H 1.09003 * 109.46809 * 299.93326 * 1 2 3 30 30 H 1.08991 * 109.46933 * 59.93039 * 1 2 3 31 31 H 1.08999 * 109.47471 * 179.97438 * 1 2 3 32 32 H 1.09011 * 109.46563 * 186.11718 * 3 2 1 33 33 H 1.08996 * 109.47509 * 306.11720 * 3 2 1 34 34 H 1.09000 * 109.47343 * 66.12580 * 3 2 1 35 35 H 1.09005 * 109.62441 * 66.50204 * 4 2 1 36 36 H 1.09000 * 109.62984 * 305.92650 * 4 2 1 37 37 H 0.97003 * 119.99122 * 4.79053 * 8 6 5 38 38 H 1.07997 * 119.91749 * 359.97438 * 10 9 8 39 39 H 1.08005 * 120.08696 * 180.25454 * 11 10 9 40 40 H 0.97002 * 120.00398 * 179.97438 * 16 15 13 41 41 H 1.08005 * 120.08732 * 179.97438 * 21 12 11 42 42 H 1.07999 * 119.91584 * 179.97438 * 22 21 12 43 43 H 1.09002 * 109.62853 * 189.10962 * 23 5 4 44 44 H 1.08991 * 109.79278 * 68.61841 * 23 5 4 45 45 H 1.08994 * 109.49785 * 293.87554 * 24 23 5 46 46 H 1.09002 * 109.49096 * 173.78447 * 24 23 5 47 47 H 1.08999 * 109.47449 * 49.63690 * 26 25 2 48 48 H 1.08995 * 109.47318 * 289.63349 * 26 25 2 49 49 H 1.09000 * 109.47123 * 193.57205 * 27 26 25 50 50 H 1.09006 * 109.47106 * 313.56851 * 27 26 25 51 51 H 0.96701 * 114.00109 * 184.90129 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 6 2.0413 -0.7238 -1.2502 5 7 3.5042 -0.8433 -1.1555 6 6 4.2976 -0.4495 -2.1712 7 8 3.8051 -0.0866 -3.2219 8 7 5.6371 -0.4580 -2.0224 9 6 6.4532 0.0421 -3.0337 10 6 7.7084 -0.5242 -3.2561 11 6 8.5113 -0.0429 -4.2479 12 6 8.0746 1.0361 -5.0412 13 6 8.9026 1.5440 -6.0656 14 1 8.4854 2.1822 -6.8304 15 6 10.2633 1.2206 -6.0899 16 7 10.9206 1.0710 -4.9680 17 14 11.1425 1.0026 -7.7236 18 1 11.8015 2.2774 -8.1051 19 1 12.1666 -0.0652 -7.5960 20 1 10.1582 0.6220 -8.7684 21 6 6.8079 1.6061 -4.8071 22 6 6.0136 1.1101 -3.8157 23 6 4.0781 -1.4043 0.0770 24 6 3.4867 -0.6537 1.2750 25 7 2.0202 -0.6939 1.1984 26 6 1.4141 -0.1359 2.4146 27 6 1.7407 -1.0374 3.6070 28 8 3.1122 -0.8681 3.9706 29 1 -0.3633 0.5128 0.8906 30 1 -0.3633 0.5149 -0.8893 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1257 1.4431 -0.1095 33 1 1.5916 1.9869 -0.8301 34 1 1.7705 1.9235 0.9397 35 1 1.7776 -0.1502 -2.1388 36 1 1.5956 -1.7169 -1.3063 37 1 6.0326 -0.8125 -1.2107 38 1 8.0438 -1.3480 -2.6436 39 1 9.4813 -0.4849 -4.4217 40 1 11.8641 0.8463 -4.9849 41 1 6.4666 2.4339 -5.4111 42 1 5.0423 1.5463 -3.6347 43 1 5.1611 -1.2807 0.0659 44 1 3.8312 -2.4633 0.1504 45 1 3.8235 0.3828 1.2573 46 1 3.8157 -1.1278 2.1997 47 1 0.3330 -0.0782 2.2883 48 1 1.8127 0.8625 2.5941 49 1 1.1052 -0.7684 4.4507 50 1 1.5627 -2.0779 3.3353 51 1 3.4097 -1.4639 4.6717 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614927940.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:52 Heat of formation + Delta-G solvation = -49.149648 kcal Electronic energy + Delta-G solvation = -31381.545836 eV Core-core repulsion = 27280.567768 eV Total energy + Delta-G solvation = -4100.978069 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.93989 -40.49848 -39.08662 -37.66657 -36.25492 -35.95494 -34.71941 -33.87908 -31.47058 -31.15842 -30.64245 -28.35920 -28.31819 -27.52293 -26.16823 -23.97873 -23.36968 -22.83225 -22.48977 -20.94499 -19.59084 -19.36833 -19.19542 -18.41237 -18.00743 -17.14587 -17.01664 -16.64345 -16.32974 -16.22719 -15.78322 -15.65540 -15.55068 -15.03893 -14.84535 -14.53576 -14.47555 -14.14933 -14.08378 -13.95939 -13.84254 -13.58032 -13.28258 -13.05245 -12.92889 -12.83996 -12.70947 -12.61429 -12.56265 -12.32143 -12.13457 -12.11495 -11.95628 -11.81151 -11.66867 -11.55958 -11.25774 -10.94022 -10.66436 -10.49818 -9.74012 -9.47327 -9.22563 -8.97661 -8.72007 -6.19435 0.86947 1.14417 1.37346 1.44587 1.56109 1.68046 2.15653 2.20466 2.65505 2.83125 2.99487 3.49837 3.68062 3.73290 3.88286 3.92468 4.03432 4.18910 4.30599 4.35599 4.39538 4.43875 4.47475 4.53100 4.58175 4.63399 4.69346 4.77651 4.79813 4.89777 4.93529 4.96369 4.98635 5.02457 5.08217 5.15513 5.16106 5.21564 5.27433 5.35149 5.46145 5.51773 5.62262 5.74791 6.02791 6.07344 6.08884 6.13705 6.20669 6.36141 6.62521 6.89664 6.99123 7.01212 7.02373 7.64124 8.17745 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023748 B = 0.002191 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.760573 B =12776.818345 C =13440.290473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.096 3.904 3 C -0.170 4.170 4 C 0.146 3.854 5 N -0.624 5.624 6 C 0.695 3.305 7 O -0.624 6.624 8 N -0.659 5.659 9 C 0.010 3.990 10 C -0.103 4.103 11 C -0.193 4.193 12 C 0.079 3.921 13 C -0.502 4.502 14 H 0.074 0.926 15 C 0.052 3.948 16 N -0.792 5.792 17 Si 0.972 3.028 18 H -0.258 1.258 19 H -0.259 1.259 20 H -0.263 1.263 21 C -0.247 4.247 22 C -0.077 4.077 23 C 0.112 3.888 24 C 0.038 3.962 25 N -0.516 5.516 26 C 0.042 3.958 27 C 0.081 3.919 28 O -0.590 6.590 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.033 0.967 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.407 0.593 38 H 0.122 0.878 39 H 0.106 0.894 40 H 0.296 0.704 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.019 0.981 46 H 0.128 0.872 47 H 0.111 0.889 48 H 0.028 0.972 49 H 0.066 0.934 50 H 0.063 0.937 51 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.227 -7.584 19.978 26.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.005 3.995 3 C -0.229 4.229 4 C 0.022 3.978 5 N -0.362 5.362 6 C 0.397 3.603 7 O -0.505 6.505 8 N -0.308 5.308 9 C -0.084 4.084 10 C -0.123 4.123 11 C -0.213 4.213 12 C 0.076 3.924 13 C -0.529 4.529 14 H 0.092 0.908 15 C -0.168 4.168 16 N -0.415 5.415 17 Si 0.792 3.208 18 H -0.183 1.183 19 H -0.183 1.183 20 H -0.187 1.187 21 C -0.268 4.268 22 C -0.098 4.098 23 C -0.011 4.011 24 C -0.091 4.091 25 N -0.241 5.241 26 C -0.085 4.085 27 C 0.004 3.996 28 O -0.400 6.400 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.245 0.755 38 H 0.140 0.860 39 H 0.124 0.876 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.101 0.899 44 H 0.108 0.892 45 H 0.037 0.963 46 H 0.145 0.855 47 H 0.129 0.871 48 H 0.046 0.954 49 H 0.084 0.916 50 H 0.081 0.919 51 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -16.545 -7.401 18.918 26.199 hybrid contribution 1.071 0.661 -0.064 1.260 sum -15.473 -6.740 18.854 25.304 Atomic orbital electron populations 1.21887 0.90850 1.03644 1.02994 1.21427 0.96862 0.90840 0.90371 1.22344 1.00491 0.97977 1.02053 1.21630 0.77572 1.01078 0.97481 1.47310 1.06658 1.66228 1.15964 1.16063 0.81715 0.78834 0.83664 1.90862 1.74633 1.56609 1.28405 1.42062 1.03723 1.64989 1.20043 1.16913 0.93068 1.00217 0.98202 1.20367 0.93663 0.99422 0.98833 1.20720 1.00502 0.99935 1.00144 1.17890 0.91837 0.91042 0.91597 1.19705 0.93890 1.29095 1.10200 0.90775 1.26773 0.97889 0.90800 1.01329 1.69957 1.10946 1.29812 1.30776 0.85363 0.77907 0.79590 0.77932 1.18257 1.18283 1.18681 1.20642 0.97979 1.04428 1.03704 1.20319 0.97755 0.95103 0.96580 1.21979 0.97861 0.98906 0.82339 1.22783 0.87941 0.98790 0.99551 1.62308 1.06316 1.53934 1.01539 1.22453 1.00958 0.96267 0.88817 1.22226 0.82508 0.99435 0.95454 1.86450 1.27572 1.65562 1.60380 0.90488 0.91739 0.90435 0.94823 0.92695 0.91628 0.91097 0.90073 0.75450 0.86049 0.87619 0.89341 0.89171 0.88643 0.89873 0.89219 0.96303 0.85487 0.87136 0.95351 0.91581 0.91866 0.75519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.04 71.98 0.58 -1.25 16 2 C 0.10 1.84 0.69 3.61 0.00 1.84 16 3 C -0.17 -3.92 7.67 71.98 0.55 -3.37 16 4 C 0.15 3.65 5.25 86.35 0.45 4.10 16 5 N -0.62 -17.81 2.38 -835.94 -1.99 -19.80 16 6 C 0.69 26.94 8.04 179.06 1.44 28.38 16 7 O -0.62 -29.89 13.44 -4.00 -0.05 -29.95 16 8 N -0.66 -25.14 5.23 -316.79 -1.66 -26.80 16 9 C 0.01 0.46 6.30 38.56 0.24 0.70 16 10 C -0.10 -4.86 9.89 22.14 0.22 -4.64 16 11 C -0.19 -10.38 8.78 22.48 0.20 -10.19 16 12 C 0.08 4.53 5.63 -21.28 -0.12 4.41 16 13 C -0.50 -28.10 8.94 23.39 0.21 -27.89 16 14 H 0.07 4.09 8.03 -2.91 -0.02 4.06 16 15 C 0.05 2.65 4.79 85.23 0.41 3.06 16 16 N -0.79 -40.61 11.52 21.82 0.25 -40.36 16 17 Si 0.97 37.97 29.67 68.60 2.04 40.01 16 18 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 19 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 20 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 21 C -0.25 -13.77 9.74 22.48 0.22 -13.55 16 22 C -0.08 -4.06 8.57 22.14 0.19 -3.87 16 23 C 0.11 2.34 6.60 86.35 0.57 2.91 16 24 C 0.04 0.72 4.88 86.38 0.42 1.14 16 25 N -0.52 -8.57 4.42 -845.77 -3.74 -12.31 16 26 C 0.04 0.54 4.67 86.30 0.40 0.95 16 27 C 0.08 0.74 7.12 71.98 0.51 1.26 16 28 O -0.59 -6.54 10.75 -148.98 -1.60 -8.14 16 29 H 0.08 0.80 6.10 -2.39 -0.01 0.78 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.03 0.97 6.13 -2.38 -0.01 0.95 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.32 6.57 -2.39 -0.02 1.31 16 35 H 0.07 2.14 7.10 -2.38 -0.02 2.12 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 37 H 0.41 12.36 6.30 -92.71 -0.58 11.78 16 38 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 39 H 0.11 5.72 6.18 -2.91 -0.02 5.70 16 40 H 0.30 13.36 8.30 -92.71 -0.77 12.59 16 41 H 0.09 4.86 8.06 -2.91 -0.02 4.84 16 42 H 0.10 5.07 6.36 -2.91 -0.02 5.05 16 43 H 0.08 1.64 5.63 -2.39 -0.01 1.62 16 44 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.02 0.45 6.24 -2.39 -0.01 0.43 16 46 H 0.13 2.11 5.11 -2.39 -0.01 2.10 16 47 H 0.11 1.03 5.61 -2.39 -0.01 1.02 16 48 H 0.03 0.47 6.87 -2.39 -0.02 0.45 16 49 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 50 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 51 H 0.39 1.09 9.12 -74.06 -0.68 0.41 16 Total: -1.00 -72.77 387.10 -0.54 -73.31 By element: Atomic # 1 Polarization: 40.36 SS G_CDS: -0.28 Total: 40.07 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 6.50 Total: -16.02 kcal Atomic # 7 Polarization: -92.14 SS G_CDS: -7.13 Total: -99.27 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -1.66 Total: -38.09 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.04 Total: 40.01 kcal Total: -72.77 -0.54 -73.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614927940.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.157 kcal (2) G-P(sol) polarization free energy of solvation -72.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds