Wall clock time and date at job start Wed Apr 1 2020 05:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00549 * 2 1 4 4 C 1.53002 * 109.47575 * 179.97438 * 3 2 1 5 5 C 1.52997 * 110.88353 * 56.19073 * 4 3 2 6 6 C 1.54851 * 111.04058 * 292.29546 * 4 3 2 7 7 C 1.51288 * 104.20925 * 217.09895 * 6 4 3 8 8 O 1.21282 * 124.93829 * 196.24306 * 7 6 4 9 9 N 1.34416 * 110.11274 * 16.26219 * 7 6 4 10 10 C 1.46501 * 124.34653 * 180.39075 * 9 7 6 11 11 N 1.46899 * 109.47174 * 270.02401 * 10 9 7 12 12 C 1.46906 * 110.99795 * 278.95479 * 11 10 9 13 13 C 1.50692 * 109.46799 * 295.54076 * 12 11 10 14 14 H 1.08001 * 120.00785 * 355.54390 * 13 12 11 15 15 C 1.37883 * 119.99795 * 175.54486 * 13 12 11 16 16 N 1.31521 * 120.00022 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99966 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47479 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47169 * 120.00254 * 17 15 13 20 20 H 1.48502 * 109.47075 * 239.99779 * 17 15 13 21 21 C 1.46897 * 111.00375 * 155.00079 * 11 10 9 22 22 C 1.50698 * 109.47177 * 195.92607 * 21 11 10 23 23 C 1.38678 * 120.41676 * 263.72815 * 22 21 11 24 24 C 1.38628 * 118.41627 * 179.78156 * 23 22 21 25 25 C 1.38222 * 119.16390 * 0.47655 * 24 23 22 26 26 N 1.31854 * 120.76222 * 359.76559 * 25 24 23 27 27 C 1.31881 * 121.73041 * 0.02562 * 26 25 24 28 28 C 1.46761 * 111.30244 * 0.41021 * 9 7 6 29 29 H 1.09001 * 109.46819 * 59.99809 * 1 2 3 30 30 H 1.08993 * 109.47442 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46737 * 300.00465 * 1 2 3 32 32 H 1.09004 * 109.47278 * 59.99910 * 3 2 1 33 33 H 1.09000 * 109.47032 * 300.00019 * 3 2 1 34 34 H 1.08996 * 109.47357 * 183.81462 * 5 4 3 35 35 H 1.09006 * 109.46808 * 303.80880 * 5 4 3 36 36 H 1.09001 * 109.47578 * 63.80833 * 5 4 3 37 37 H 1.08996 * 110.47694 * 98.41700 * 6 4 3 38 38 H 1.09005 * 110.48911 * 335.78108 * 6 4 3 39 39 H 1.09004 * 109.47283 * 30.02045 * 10 9 7 40 40 H 1.08998 * 109.47349 * 150.02278 * 10 9 7 41 41 H 1.08998 * 109.46911 * 55.54411 * 12 11 10 42 42 H 1.09001 * 109.46785 * 175.54227 * 12 11 10 43 43 H 0.96996 * 119.99740 * 180.02562 * 16 15 13 44 44 H 1.08999 * 109.46665 * 315.92231 * 21 11 10 45 45 H 1.08994 * 109.47338 * 75.92632 * 21 11 10 46 46 H 1.07998 * 120.78897 * 0.02562 * 23 22 21 47 47 H 1.08004 * 120.41498 * 180.26641 * 24 23 22 48 48 H 1.08004 * 119.61764 * 179.74822 * 25 24 23 49 49 H 1.07994 * 119.62360 * 179.97438 * 27 26 25 50 50 H 1.08997 * 110.24577 * 101.98675 * 28 9 7 51 51 H 1.09001 * 110.24649 * 223.89648 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.0169 0.3483 -1.1867 6 6 4.0459 0.5943 1.3382 7 6 5.3339 1.3413 1.6063 8 8 6.1857 0.9953 2.3973 9 7 5.3965 2.4443 0.8406 10 6 6.5148 3.3907 0.8444 11 7 6.2679 4.4363 1.8463 12 6 5.3634 5.4671 1.3195 13 6 6.0273 6.1768 0.1678 14 1 7.0477 5.9409 -0.0962 15 6 5.3321 7.1274 -0.5492 16 7 4.0893 7.4144 -0.2283 17 14 6.1552 8.0076 -1.9764 18 1 7.5449 7.5077 -2.1313 19 1 5.3932 7.7476 -3.2242 20 1 6.1821 9.4680 -1.7082 21 6 7.5292 5.0297 2.3098 22 6 7.2854 5.7957 3.5845 23 6 7.0697 7.1652 3.5503 24 6 6.8452 7.8277 4.7471 25 6 6.8536 7.1081 5.9273 26 7 7.0672 5.8070 5.9223 27 6 7.2802 5.1434 4.8027 28 6 4.2006 2.5788 0.0007 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 5.0976 0.2203 -1.1266 35 1 3.5334 -0.6284 -1.1630 36 1 3.7624 0.8572 -2.1165 37 1 4.2386 -0.4735 1.2349 38 1 3.3256 0.7775 2.1356 39 1 7.4365 2.8631 1.0896 40 1 6.6082 3.8467 -0.1412 41 1 4.4410 4.9995 0.9751 42 1 5.1347 6.1861 2.1061 43 1 3.6002 8.0829 -0.7329 44 1 8.2563 4.2390 2.4945 45 1 7.9142 5.7066 1.5472 46 1 7.0727 7.7021 2.6132 47 1 6.6693 8.8933 4.7576 48 1 6.6835 7.6176 6.8643 49 1 7.4519 4.0778 4.8382 50 1 3.5232 3.3199 0.4249 51 1 4.4819 2.8625 -1.0135 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747454679.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:31 Heat of formation + Delta-G solvation = -33.795855 kcal Electronic energy + Delta-G solvation = -31807.205189 eV Core-core repulsion = 27706.892911 eV Total energy + Delta-G solvation = -4100.312278 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.40477 -39.68548 -38.04097 -36.84569 -36.10714 -33.24970 -32.77302 -31.74998 -30.93128 -28.53384 -27.54025 -27.46850 -26.61787 -25.77954 -24.74352 -23.77822 -23.00603 -22.09545 -20.25720 -19.58347 -19.01795 -16.96683 -16.51664 -16.44425 -16.11026 -16.09813 -15.83495 -15.60119 -15.22538 -14.82895 -14.77941 -14.55889 -14.17326 -13.83946 -13.75177 -13.32249 -13.17951 -13.05652 -12.81990 -12.66509 -12.53356 -12.47766 -12.17871 -11.89850 -11.75004 -11.65381 -11.31469 -11.17323 -11.04780 -11.00922 -10.81068 -10.68567 -10.66840 -10.51282 -10.22084 -9.82115 -9.76971 -9.32842 -9.25901 -9.01378 -8.65658 -8.56106 -8.26873 -7.37452 -6.20671 -4.31003 1.57464 1.79575 3.03362 3.12547 3.22940 3.24555 3.33957 3.73913 4.24081 4.26619 4.49674 4.55074 4.83134 4.86650 5.00327 5.09607 5.12372 5.13101 5.21418 5.27402 5.28184 5.45761 5.48058 5.51537 5.51697 5.54373 5.61100 5.68223 5.75761 5.82481 5.84205 5.85850 5.97349 6.06705 6.09238 6.11993 6.17784 6.21324 6.30765 6.41242 6.64068 6.88080 6.89402 7.02871 7.12321 7.20042 7.36967 7.58146 7.73053 7.89308 8.03883 8.11288 8.40664 8.65625 8.80024 9.36684 10.83684 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008231 B = 0.003909 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3401.001273 B = 7161.742106 C = 9127.077870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.077 3.923 4 C -0.072 4.072 5 C -0.131 4.131 6 C -0.139 4.139 7 C 0.521 3.479 8 O -0.541 6.541 9 N -0.595 5.595 10 C 0.295 3.705 11 N -0.552 5.552 12 C 0.187 3.813 13 C -0.554 4.554 14 H 0.058 0.942 15 C 0.071 3.929 16 N -0.885 5.885 17 Si 0.884 3.116 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.104 3.896 22 C -0.107 4.107 23 C -0.053 4.053 24 C -0.179 4.179 25 C 0.082 3.918 26 N -0.495 5.495 27 C 0.110 3.890 28 C 0.118 3.882 29 H 0.040 0.960 30 H 0.083 0.917 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.035 0.965 42 H 0.030 0.970 43 H 0.263 0.737 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.140 0.860 47 H 0.127 0.873 48 H 0.146 0.854 49 H 0.150 0.850 50 H 0.078 0.922 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.742 -8.129 -0.169 8.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.001 3.999 4 C -0.073 4.073 5 C -0.188 4.188 6 C -0.179 4.179 7 C 0.308 3.692 8 O -0.418 6.418 9 N -0.328 5.328 10 C 0.084 3.916 11 N -0.277 5.277 12 C 0.062 3.938 13 C -0.593 4.593 14 H 0.076 0.924 15 C -0.133 4.133 16 N -0.522 5.522 17 Si 0.712 3.288 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.025 4.025 22 C -0.109 4.109 23 C -0.080 4.080 24 C -0.199 4.199 25 C -0.075 4.075 26 N -0.204 5.204 27 C -0.047 4.047 28 C -0.006 4.006 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.053 0.947 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.158 0.842 47 H 0.145 0.855 48 H 0.163 0.837 49 H 0.167 0.833 50 H 0.096 0.904 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.492 -8.984 1.378 9.425 hybrid contribution 0.162 2.007 -2.377 3.115 sum -2.330 -6.977 -0.999 7.424 Atomic orbital electron populations 1.22722 0.81172 1.02517 1.00074 1.87847 1.19419 1.27828 1.95450 1.22467 0.91847 0.84603 1.01023 1.21537 0.93582 0.96023 0.96139 1.21714 1.01039 0.99972 0.96085 1.22442 0.96406 1.01390 0.97683 1.20766 0.87598 0.81467 0.79357 1.90668 1.44096 1.71142 1.35883 1.48265 1.20355 1.23489 1.40708 1.21719 0.86495 0.86978 0.96369 1.62157 1.13026 1.14260 1.38261 1.19828 0.91658 0.88657 0.93663 1.21717 0.99425 1.22406 1.15737 0.92372 1.24911 0.94658 0.96597 0.97092 1.69951 1.09515 1.32566 1.40210 0.86674 0.79733 0.79792 0.82650 1.19765 1.20918 1.20927 1.20787 0.91751 0.96976 0.92947 1.20802 0.99427 0.94258 0.96432 1.21707 0.93311 0.94233 0.98707 1.22078 1.02915 1.01202 0.93736 1.22581 0.96926 0.90280 0.97693 1.67637 1.12333 1.09327 1.31088 1.22590 0.95021 0.99785 0.87285 1.22075 0.87165 0.95095 0.96282 0.94112 0.89799 0.94064 0.92555 0.92475 0.92446 0.91369 0.92188 0.88365 0.88204 0.90701 0.90739 0.94743 0.95237 0.92755 0.91542 0.91900 0.84232 0.85475 0.83662 0.83252 0.90395 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.31 9.80 -35.23 -0.35 -4.65 16 3 C 0.08 0.87 4.75 37.16 0.18 1.04 16 4 C -0.07 -0.88 0.80 -152.76 -0.12 -1.00 16 5 C -0.13 -1.44 8.36 37.16 0.31 -1.13 16 6 C -0.14 -1.89 5.87 -26.62 -0.16 -2.05 16 7 C 0.52 9.08 8.02 -10.86 -0.09 8.99 16 8 O -0.54 -11.29 17.60 5.56 0.10 -11.19 16 9 N -0.59 -10.10 3.13 -175.91 -0.55 -10.65 16 10 C 0.30 5.39 5.57 -63.31 -0.35 5.04 16 11 N -0.55 -10.96 4.75 -241.44 -1.15 -12.11 16 12 C 0.19 4.29 4.88 -4.98 -0.02 4.26 16 13 C -0.55 -13.19 7.13 -34.44 -0.25 -13.43 16 14 H 0.06 1.37 6.13 -52.49 -0.32 1.05 16 15 C 0.07 1.77 5.46 -17.81 -0.10 1.68 16 16 N -0.88 -23.48 13.29 55.43 0.74 -22.74 16 17 Si 0.88 19.42 29.54 -169.99 -5.02 14.40 16 18 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 21 C 0.10 1.89 4.94 -4.98 -0.02 1.87 16 22 C -0.11 -1.93 4.89 -104.48 -0.51 -2.44 16 23 C -0.05 -0.94 8.76 -39.27 -0.34 -1.29 16 24 C -0.18 -2.81 10.11 -39.44 -0.40 -3.21 16 25 C 0.08 1.29 11.18 -17.55 -0.20 1.09 16 26 N -0.50 -8.79 10.36 -13.25 -0.14 -8.93 16 27 C 0.11 1.97 10.88 -17.55 -0.19 1.78 16 28 C 0.12 1.74 5.83 -3.13 -0.02 1.72 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.63 8.06 -51.93 -0.42 0.22 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.73 7.57 -51.93 -0.39 0.33 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.10 1.25 7.91 -51.93 -0.41 0.84 16 38 H 0.10 1.32 7.85 -51.93 -0.41 0.91 16 39 H 0.07 1.33 7.34 -51.93 -0.38 0.95 16 40 H 0.07 1.41 6.53 -51.93 -0.34 1.07 16 41 H 0.03 0.85 6.13 -51.93 -0.32 0.53 16 42 H 0.03 0.76 6.71 -51.93 -0.35 0.41 16 43 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 44 H 0.07 1.10 7.63 -51.93 -0.40 0.70 16 45 H 0.06 1.19 5.96 -51.93 -0.31 0.88 16 46 H 0.14 2.60 8.06 -52.49 -0.42 2.17 16 47 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 48 H 0.15 1.79 8.06 -52.48 -0.42 1.37 16 49 H 0.15 2.56 8.06 -52.49 -0.42 2.13 16 50 H 0.08 1.28 6.65 -51.93 -0.35 0.94 16 51 H 0.08 1.21 7.91 -51.93 -0.41 0.80 16 LS Contribution 410.00 15.07 6.18 6.18 Total: -1.00 -29.75 410.00 -9.52 -39.27 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -8.16 Total: 6.13 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -1.17 Total: 4.29 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -1.10 Total: -54.43 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.25 Total: -15.85 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -29.75 -9.52 -39.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747454679.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.474 kcal (2) G-P(sol) polarization free energy of solvation -29.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds