Wall clock time and date at job start Wed Apr 1 2020 05:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00549 * 2 1 4 4 C 1.53002 * 109.47575 * 179.97438 * 3 2 1 5 5 C 1.52997 * 110.88353 * 56.19073 * 4 3 2 6 6 C 1.54851 * 111.04058 * 292.29546 * 4 3 2 7 7 C 1.51288 * 104.20925 * 217.09895 * 6 4 3 8 8 O 1.21282 * 124.93829 * 196.24306 * 7 6 4 9 9 N 1.34416 * 110.11274 * 16.26219 * 7 6 4 10 10 C 1.46501 * 124.34653 * 180.39075 * 9 7 6 11 11 N 1.46899 * 109.47174 * 270.02401 * 10 9 7 12 12 C 1.46906 * 110.99795 * 278.95479 * 11 10 9 13 13 C 1.50692 * 109.46799 * 295.54076 * 12 11 10 14 14 H 1.08001 * 120.00785 * 355.54390 * 13 12 11 15 15 C 1.37883 * 119.99795 * 175.54486 * 13 12 11 16 16 N 1.31521 * 120.00022 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99966 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47479 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47169 * 120.00254 * 17 15 13 20 20 H 1.48502 * 109.47075 * 239.99779 * 17 15 13 21 21 C 1.46897 * 111.00375 * 155.00079 * 11 10 9 22 22 C 1.50698 * 109.47177 * 195.92607 * 21 11 10 23 23 C 1.38678 * 120.41676 * 263.72815 * 22 21 11 24 24 C 1.38628 * 118.41627 * 179.78156 * 23 22 21 25 25 C 1.38222 * 119.16390 * 0.47655 * 24 23 22 26 26 N 1.31854 * 120.76222 * 359.76559 * 25 24 23 27 27 C 1.31881 * 121.73041 * 0.02562 * 26 25 24 28 28 C 1.46761 * 111.30244 * 0.41021 * 9 7 6 29 29 H 1.09001 * 109.46819 * 59.99809 * 1 2 3 30 30 H 1.08993 * 109.47442 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46737 * 300.00465 * 1 2 3 32 32 H 1.09004 * 109.47278 * 59.99910 * 3 2 1 33 33 H 1.09000 * 109.47032 * 300.00019 * 3 2 1 34 34 H 1.08996 * 109.47357 * 183.81462 * 5 4 3 35 35 H 1.09006 * 109.46808 * 303.80880 * 5 4 3 36 36 H 1.09001 * 109.47578 * 63.80833 * 5 4 3 37 37 H 1.08996 * 110.47694 * 98.41700 * 6 4 3 38 38 H 1.09005 * 110.48911 * 335.78108 * 6 4 3 39 39 H 1.09004 * 109.47283 * 30.02045 * 10 9 7 40 40 H 1.08998 * 109.47349 * 150.02278 * 10 9 7 41 41 H 1.08998 * 109.46911 * 55.54411 * 12 11 10 42 42 H 1.09001 * 109.46785 * 175.54227 * 12 11 10 43 43 H 0.96996 * 119.99740 * 180.02562 * 16 15 13 44 44 H 1.08999 * 109.46665 * 315.92231 * 21 11 10 45 45 H 1.08994 * 109.47338 * 75.92632 * 21 11 10 46 46 H 1.07998 * 120.78897 * 0.02562 * 23 22 21 47 47 H 1.08004 * 120.41498 * 180.26641 * 24 23 22 48 48 H 1.08004 * 119.61764 * 179.74822 * 25 24 23 49 49 H 1.07994 * 119.62360 * 179.97438 * 27 26 25 50 50 H 1.08997 * 110.24577 * 101.98675 * 28 9 7 51 51 H 1.09001 * 110.24649 * 223.89648 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.0169 0.3483 -1.1867 6 6 4.0459 0.5943 1.3382 7 6 5.3339 1.3413 1.6063 8 8 6.1857 0.9953 2.3973 9 7 5.3965 2.4443 0.8406 10 6 6.5148 3.3907 0.8444 11 7 6.2679 4.4363 1.8463 12 6 5.3634 5.4671 1.3195 13 6 6.0273 6.1768 0.1678 14 1 7.0477 5.9409 -0.0962 15 6 5.3321 7.1274 -0.5492 16 7 4.0893 7.4144 -0.2283 17 14 6.1552 8.0076 -1.9764 18 1 7.5449 7.5077 -2.1313 19 1 5.3932 7.7476 -3.2242 20 1 6.1821 9.4680 -1.7082 21 6 7.5292 5.0297 2.3098 22 6 7.2854 5.7957 3.5845 23 6 7.0697 7.1652 3.5503 24 6 6.8452 7.8277 4.7471 25 6 6.8536 7.1081 5.9273 26 7 7.0672 5.8070 5.9223 27 6 7.2802 5.1434 4.8027 28 6 4.2006 2.5788 0.0007 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 5.0976 0.2203 -1.1266 35 1 3.5334 -0.6284 -1.1630 36 1 3.7624 0.8572 -2.1165 37 1 4.2386 -0.4735 1.2349 38 1 3.3256 0.7775 2.1356 39 1 7.4365 2.8631 1.0896 40 1 6.6082 3.8467 -0.1412 41 1 4.4410 4.9995 0.9751 42 1 5.1347 6.1861 2.1061 43 1 3.6002 8.0829 -0.7329 44 1 8.2563 4.2390 2.4945 45 1 7.9142 5.7066 1.5472 46 1 7.0727 7.7021 2.6132 47 1 6.6693 8.8933 4.7576 48 1 6.6835 7.6176 6.8643 49 1 7.4519 4.0778 4.8382 50 1 3.5232 3.3199 0.4249 51 1 4.4819 2.8625 -1.0135 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747454679.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:30 Heat of formation + Delta-G solvation = -52.191464 kcal Electronic energy + Delta-G solvation = -31808.002883 eV Core-core repulsion = 27706.892911 eV Total energy + Delta-G solvation = -4101.109972 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.69447 -41.03351 -39.04205 -38.42553 -37.33564 -34.72929 -34.43094 -33.12493 -32.32181 -29.77548 -29.15596 -28.32041 -27.86912 -26.94172 -26.11098 -25.21052 -24.36886 -23.56430 -21.80565 -20.66487 -20.43560 -18.69760 -17.86122 -17.59137 -17.49057 -17.20537 -17.03563 -16.78760 -16.65796 -16.34828 -16.01518 -15.90279 -15.45012 -15.30338 -14.97164 -14.68606 -14.52030 -14.21594 -14.12470 -14.08423 -13.88545 -13.83213 -13.39306 -13.17288 -12.96314 -12.82185 -12.77880 -12.64682 -12.43716 -12.35157 -12.21284 -12.11422 -11.97197 -11.81129 -11.77547 -11.60459 -10.77620 -10.66620 -10.55848 -10.53569 -10.37538 -9.95627 -9.70168 -9.04952 -8.12410 -6.29623 0.24818 0.42044 1.37208 1.42907 1.50446 1.63427 2.07212 2.39163 2.79311 2.91122 3.14647 3.37831 3.45579 3.52910 3.62845 3.85838 3.92823 3.96641 4.08578 4.18431 4.19465 4.22613 4.29598 4.46853 4.49484 4.52496 4.55104 4.62466 4.65347 4.66744 4.72043 4.76298 4.79567 4.85164 4.90587 4.92991 4.97743 5.08494 5.11167 5.21215 5.29998 5.38793 5.40807 5.49931 5.60016 5.79246 5.85847 6.00279 6.18014 6.24466 6.33167 6.43918 6.89575 7.07275 7.24721 7.41489 8.90380 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008231 B = 0.003909 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3401.001273 B = 7161.742106 C = 9127.077870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.081 3.919 4 C -0.059 4.059 5 C -0.125 4.125 6 C -0.129 4.129 7 C 0.514 3.486 8 O -0.579 6.579 9 N -0.597 5.597 10 C 0.298 3.702 11 N -0.556 5.556 12 C 0.210 3.790 13 C -0.547 4.547 14 H 0.061 0.939 15 C 0.028 3.972 16 N -0.918 5.918 17 Si 0.943 3.057 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.285 1.285 21 C 0.109 3.891 22 C -0.120 4.120 23 C -0.069 4.069 24 C -0.174 4.174 25 C 0.085 3.915 26 N -0.511 5.511 27 C 0.102 3.898 28 C 0.118 3.882 29 H 0.049 0.951 30 H 0.100 0.900 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.014 0.986 42 H -0.001 1.001 43 H 0.263 0.737 44 H 0.082 0.918 45 H 0.053 0.947 46 H 0.125 0.875 47 H 0.156 0.844 48 H 0.184 0.816 49 H 0.151 0.849 50 H 0.059 0.941 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.025 -8.379 -0.523 8.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C 0.004 3.996 4 C -0.059 4.059 5 C -0.182 4.182 6 C -0.169 4.169 7 C 0.303 3.697 8 O -0.459 6.459 9 N -0.330 5.330 10 C 0.086 3.914 11 N -0.282 5.282 12 C 0.084 3.916 13 C -0.586 4.586 14 H 0.079 0.921 15 C -0.173 4.173 16 N -0.558 5.558 17 Si 0.770 3.230 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.212 1.212 21 C -0.020 4.020 22 C -0.122 4.122 23 C -0.095 4.095 24 C -0.194 4.194 25 C -0.072 4.072 26 N -0.219 5.219 27 C -0.055 4.055 28 C -0.005 4.005 29 H 0.067 0.933 30 H 0.118 0.882 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.131 0.869 38 H 0.123 0.877 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.032 0.968 42 H 0.017 0.983 43 H 0.072 0.928 44 H 0.100 0.900 45 H 0.071 0.929 46 H 0.143 0.857 47 H 0.174 0.826 48 H 0.201 0.799 49 H 0.168 0.832 50 H 0.077 0.923 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.780 -9.248 1.006 9.709 hybrid contribution 0.233 2.109 -2.199 3.056 sum -2.547 -7.139 -1.193 7.673 Atomic orbital electron populations 1.22912 0.79686 1.03811 1.00644 1.87815 1.21020 1.27391 1.95556 1.22369 0.90856 0.85012 1.01337 1.21464 0.94365 0.94097 0.96003 1.21680 1.00637 1.00175 0.95749 1.22424 0.94263 1.01653 0.98568 1.21403 0.88294 0.81500 0.78494 1.90638 1.45741 1.72090 1.37478 1.48362 1.20567 1.23106 1.40930 1.21654 0.87442 0.86754 0.95522 1.62124 1.13730 1.13788 1.38514 1.19393 0.91494 0.88372 0.92320 1.21867 0.99336 1.21916 1.15480 0.92133 1.25559 0.95039 0.97373 0.99288 1.70060 1.10836 1.33405 1.41490 0.85735 0.79034 0.78398 0.79859 1.19099 1.20772 1.21165 1.20775 0.91140 0.97228 0.92849 1.20794 1.00466 0.94552 0.96395 1.21729 0.94330 0.94306 0.99165 1.22391 1.01475 1.02654 0.92860 1.23196 0.95264 0.89610 0.99169 1.67675 1.12838 1.10518 1.30916 1.22611 0.95522 1.00006 0.87362 1.22114 0.86182 0.96499 0.95690 0.93283 0.88204 0.93770 0.92925 0.91603 0.93058 0.90487 0.91193 0.86934 0.87657 0.90114 0.91409 0.96788 0.98273 0.92807 0.89989 0.92875 0.85683 0.82609 0.79946 0.83161 0.92286 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.40 -8.07 9.80 -148.98 -1.46 -9.53 16 3 C 0.08 1.70 4.75 71.98 0.34 2.05 16 4 C -0.06 -1.37 0.80 -51.05 -0.04 -1.41 16 5 C -0.13 -2.54 8.36 71.98 0.60 -1.93 16 6 C -0.13 -3.40 5.87 30.67 0.18 -3.22 16 7 C 0.51 17.96 8.02 87.90 0.71 18.67 16 8 O -0.58 -24.44 17.60 -3.03 -0.05 -24.50 16 9 N -0.60 -20.53 3.13 -829.05 -2.59 -23.12 16 10 C 0.30 11.04 5.57 170.81 0.95 11.99 16 11 N -0.56 -22.67 4.75 -917.77 -4.36 -27.03 16 12 C 0.21 9.93 4.88 85.55 0.42 10.35 16 13 C -0.55 -26.40 7.13 25.60 0.18 -26.22 16 14 H 0.06 2.86 6.13 -2.91 -0.02 2.85 16 15 C 0.03 1.40 5.46 84.66 0.46 1.86 16 16 N -0.92 -49.45 13.29 21.45 0.28 -49.17 16 17 Si 0.94 39.84 29.54 68.60 2.03 41.86 16 18 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 19 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 20 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 21 C 0.11 4.02 4.94 85.56 0.42 4.44 16 22 C -0.12 -4.39 4.89 -19.77 -0.10 -4.49 16 23 C -0.07 -2.46 8.76 22.47 0.20 -2.26 16 24 C -0.17 -5.23 10.11 22.36 0.23 -5.00 16 25 C 0.08 2.48 11.18 84.69 0.95 3.43 16 26 N -0.51 -17.66 10.36 -195.85 -2.03 -19.69 16 27 C 0.10 3.64 10.88 84.67 0.92 4.56 16 28 C 0.12 3.52 5.83 86.83 0.51 4.02 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.04 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.05 1.14 8.06 -2.38 -0.02 1.12 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.46 7.57 -2.38 -0.02 1.44 16 36 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.11 2.67 7.91 -2.39 -0.02 2.65 16 38 H 0.11 2.69 7.85 -2.38 -0.02 2.67 16 39 H 0.08 2.89 7.34 -2.39 -0.02 2.88 16 40 H 0.07 2.60 6.53 -2.39 -0.02 2.59 16 41 H 0.01 0.72 6.13 -2.39 -0.01 0.70 16 42 H 0.00 -0.04 6.71 -2.39 -0.02 -0.06 16 43 H 0.26 13.51 8.31 -92.71 -0.77 12.74 16 44 H 0.08 2.74 7.63 -2.39 -0.02 2.72 16 45 H 0.05 2.06 5.96 -2.39 -0.01 2.04 16 46 H 0.13 4.79 8.06 -2.91 -0.02 4.76 16 47 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 48 H 0.18 3.88 8.06 -2.91 -0.02 3.86 16 49 H 0.15 5.22 8.06 -2.91 -0.02 5.20 16 50 H 0.06 2.00 6.65 -2.39 -0.02 1.98 16 51 H 0.09 2.49 7.91 -2.39 -0.02 2.47 16 Total: -1.00 -64.07 410.00 0.90 -63.16 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.92 Total: 29.54 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 8.17 Total: 18.46 kcal Atomic # 7 Polarization: -110.30 SS G_CDS: -8.70 Total: -119.00 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -1.51 Total: -34.03 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.86 kcal Total: -64.07 0.90 -63.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747454679.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.971 kcal (2) G-P(sol) polarization free energy of solvation -64.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds