Wall clock time and date at job start Wed Apr 1 2020 05:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 110.99966 * 2 1 4 4 C 1.53239 * 109.34222 * 172.73995 * 3 2 1 5 5 N 1.47086 * 108.51767 * 53.82476 * 4 3 2 6 6 C 1.34780 * 120.87833 * 128.81395 * 5 4 3 7 7 O 1.21586 * 120.00233 * 185.33356 * 6 5 4 8 8 N 1.34778 * 119.99860 * 5.34637 * 6 5 4 9 9 C 1.46507 * 119.99643 * 175.03219 * 8 6 5 10 10 C 1.50698 * 109.46653 * 179.97438 * 9 8 6 11 11 C 1.38300 * 119.93216 * 90.00205 * 10 9 8 12 12 C 1.38105 * 120.07007 * 180.29650 * 11 10 9 13 13 C 1.38886 * 119.92838 * 359.46858 * 12 11 10 14 14 O 1.35752 * 120.06874 * 180.25108 * 13 12 11 15 15 C 1.34830 * 116.99853 * 185.61942 * 14 13 12 16 16 H 1.07992 * 120.00324 * 354.97015 * 15 14 13 17 17 C 1.38651 * 119.99535 * 174.96476 * 15 14 13 18 18 N 1.31558 * 120.00661 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00013 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46744 * 59.99993 * 19 17 15 21 21 H 1.48497 * 109.47478 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46898 * 300.00505 * 19 17 15 23 23 C 1.38877 * 119.86064 * 0.52983 * 13 12 11 24 24 C 1.38099 * 119.93174 * 359.72304 * 23 13 12 25 25 C 1.47074 * 118.23914 * 309.09188 * 5 4 3 26 26 C 1.46894 * 111.00521 * 235.69058 * 2 1 3 27 27 C 1.53001 * 109.49239 * 307.22098 * 26 2 1 28 28 C 1.53005 * 109.49068 * 67.26814 * 26 2 1 29 29 H 1.08999 * 109.46884 * 63.95752 * 1 2 3 30 30 H 1.08998 * 109.47080 * 183.95375 * 1 2 3 31 31 H 1.08997 * 109.47584 * 303.95945 * 1 2 3 32 32 H 1.08998 * 109.49610 * 52.78379 * 3 2 1 33 33 H 1.09001 * 109.49377 * 292.69899 * 3 2 1 34 34 H 1.08996 * 109.63059 * 294.12442 * 4 3 2 35 35 H 1.08996 * 109.63045 * 173.53278 * 4 3 2 36 36 H 0.97000 * 120.00342 * 355.03035 * 8 6 5 37 37 H 1.08997 * 109.47361 * 60.00326 * 9 8 6 38 38 H 1.08994 * 109.47333 * 299.99424 * 9 8 6 39 39 H 1.07994 * 119.96771 * 0.02562 * 11 10 9 40 40 H 1.08001 * 120.03756 * 179.72548 * 12 11 10 41 41 H 0.96996 * 120.00748 * 179.97438 * 18 17 15 42 42 H 1.07996 * 120.03340 * 179.70193 * 23 13 12 43 43 H 1.07997 * 119.96730 * 179.97438 * 24 23 13 44 44 H 1.09007 * 109.62807 * 170.62053 * 25 5 4 45 45 H 1.08999 * 109.62846 * 291.19903 * 25 5 4 46 46 H 1.08999 * 109.47620 * 59.99839 * 27 26 2 47 47 H 1.09007 * 109.46586 * 179.97438 * 27 26 2 48 48 H 1.09000 * 109.47013 * 299.99199 * 27 26 2 49 49 H 1.09007 * 109.47035 * 60.00103 * 28 26 2 50 50 H 1.08997 * 109.47371 * 180.02562 * 28 26 2 51 51 H 1.08996 * 109.47134 * 300.00362 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5164 1.3312 0.1827 5 7 4.0870 0.4459 -0.8439 6 6 5.1056 0.8581 -1.6243 7 8 5.5011 0.1516 -2.5313 8 7 5.6861 2.0535 -1.3989 9 6 6.8621 2.4546 -2.1752 10 6 7.3130 3.8229 -1.7329 11 6 8.2332 3.9484 -0.7081 12 6 8.6438 5.2010 -0.2963 13 6 8.1399 6.3351 -0.9199 14 8 8.5454 7.5677 -0.5209 15 6 7.9323 8.6267 -1.0868 16 1 7.2148 8.4752 -1.8796 17 6 8.2228 9.9104 -0.6507 18 7 9.0971 10.0951 0.3148 19 14 7.3728 11.3778 -1.4342 20 1 5.9047 11.2584 -1.2452 21 1 7.8546 12.6285 -0.7948 22 1 7.6838 11.4130 -2.8858 23 6 7.2160 6.2057 -1.9487 24 6 6.8055 4.9505 -2.3523 25 6 3.5124 -0.8989 -1.0006 26 6 1.9956 -0.7730 -1.1327 27 6 1.3641 -2.1666 -1.1373 28 6 1.6582 -0.0553 -2.4413 29 1 -0.3633 0.4512 -0.9233 30 1 -0.3633 -1.0252 0.0709 31 1 -0.3634 0.5740 0.8523 32 1 1.5456 1.9337 0.8182 33 1 1.7556 1.8531 -0.9479 34 1 3.7561 0.9450 1.1734 35 1 3.9255 2.3351 0.0690 36 1 5.3253 2.6482 -0.7229 37 1 6.6063 2.4816 -3.2344 38 1 7.6662 1.7369 -2.0137 39 1 8.6278 3.0660 -0.2264 40 1 9.3591 5.2985 0.5069 41 1 9.3007 10.9932 0.6197 42 1 6.8188 7.0859 -2.4323 43 1 6.0867 4.8492 -3.1520 44 1 3.9189 -1.3687 -1.8963 45 1 3.7517 -1.5035 -0.1258 46 1 0.2821 -2.0750 -1.2319 47 1 1.7548 -2.7396 -1.9783 48 1 1.6054 -2.6779 -0.2054 49 1 2.1090 0.9371 -2.4380 50 1 2.0486 -0.6293 -3.2816 51 1 0.5764 0.0373 -2.5364 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883313045.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:57 Heat of formation + Delta-G solvation = -7.561129 kcal Electronic energy + Delta-G solvation = -30572.733376 eV Core-core repulsion = 26473.558721 eV Total energy + Delta-G solvation = -4099.174655 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.90275 -39.34324 -38.85630 -36.88480 -35.06306 -34.45805 -33.32707 -32.36799 -30.30569 -30.02686 -29.21129 -27.69441 -27.28521 -25.83185 -24.94982 -24.00920 -23.16211 -22.06136 -20.68898 -20.22932 -18.77965 -18.33626 -18.07058 -17.03730 -16.66412 -16.05223 -15.81977 -15.34685 -14.88149 -14.82882 -14.72129 -14.61088 -14.43754 -14.17979 -13.87825 -13.72910 -13.61794 -13.33965 -13.09243 -12.79373 -12.69735 -12.57041 -12.33878 -12.29048 -12.15138 -11.98189 -11.70216 -11.63890 -11.50185 -11.38707 -11.28900 -11.07629 -10.95503 -10.79931 -10.69810 -10.51585 -10.07845 -9.44324 -9.11992 -8.92180 -8.79379 -8.43812 -8.29388 -7.34246 -6.53999 -4.13075 2.01154 2.12056 2.68901 3.07951 3.08551 3.11738 3.20156 3.49587 3.88819 3.91432 4.39115 4.50756 4.52194 4.56227 4.71364 4.88154 4.89034 5.00690 5.07255 5.14676 5.16699 5.22039 5.26157 5.27869 5.32663 5.44142 5.45491 5.47893 5.50423 5.54453 5.63415 5.66516 5.69795 5.78781 5.81877 5.92281 5.97208 6.11093 6.29423 6.34620 6.57023 6.60169 6.63489 6.70076 6.79563 6.89922 6.97841 7.14474 7.26980 7.34055 7.70420 7.90460 7.96860 8.60944 8.91119 9.59288 10.63363 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016499 B = 0.002045 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.629812 B =13687.051251 C =14578.280908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.529 5.529 3 C 0.035 3.965 4 C 0.116 3.884 5 N -0.632 5.632 6 C 0.706 3.294 7 O -0.595 6.595 8 N -0.738 5.738 9 C 0.197 3.803 10 C -0.214 4.214 11 C -0.053 4.053 12 C -0.195 4.195 13 C 0.160 3.840 14 O -0.173 6.173 15 C -0.394 4.394 16 H 0.093 0.907 17 C 0.041 3.959 18 N -0.859 5.859 19 Si 0.942 3.058 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.269 1.269 23 C -0.237 4.237 24 C -0.050 4.050 25 C 0.147 3.853 26 C 0.090 3.910 27 C -0.140 4.140 28 C -0.176 4.176 29 H 0.028 0.972 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.396 0.604 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.113 0.887 40 H 0.118 0.882 41 H 0.272 0.728 42 H 0.128 0.872 43 H 0.107 0.893 44 H 0.096 0.904 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.066 0.934 49 H 0.060 0.940 50 H 0.064 0.936 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.337 -19.384 -0.463 25.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.253 5.253 3 C -0.093 4.093 4 C -0.008 4.008 5 N -0.370 5.370 6 C 0.408 3.592 7 O -0.474 6.474 8 N -0.395 5.395 9 C 0.074 3.926 10 C -0.216 4.216 11 C -0.072 4.072 12 C -0.215 4.215 13 C 0.106 3.894 14 O -0.075 6.075 15 C -0.470 4.470 16 H 0.110 0.890 17 C -0.164 4.164 18 N -0.493 5.493 19 Si 0.766 3.234 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.194 1.194 23 C -0.257 4.257 24 C -0.069 4.069 25 C 0.023 3.977 26 C 0.000 4.000 27 C -0.198 4.198 28 C -0.235 4.235 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.232 0.768 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.131 0.869 40 H 0.136 0.864 41 H 0.082 0.918 42 H 0.145 0.855 43 H 0.125 0.875 44 H 0.114 0.886 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.079 0.921 50 H 0.083 0.917 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.546 -19.821 -0.403 25.193 hybrid contribution -0.978 1.645 -0.786 2.069 sum -16.523 -18.176 -1.190 24.592 Atomic orbital electron populations 1.22461 0.87357 1.02526 1.00575 1.62177 1.07803 1.13144 1.42220 1.22542 0.95189 0.89957 1.01645 1.21712 0.92521 0.94310 0.92263 1.47267 1.35875 1.16071 1.37768 1.15901 0.79622 0.82033 0.81686 1.90889 1.66791 1.56553 1.33174 1.45679 1.32829 1.17937 1.43078 1.19830 0.85709 0.92560 0.94458 1.19228 1.05474 0.93374 1.03480 1.20539 0.95633 0.95947 0.95101 1.20222 1.06565 0.90372 1.04313 1.19441 0.91399 0.86861 0.91733 1.83980 1.54599 1.10238 1.58729 1.21299 1.23882 0.83003 1.18799 0.88992 1.25314 0.96791 0.98076 0.96269 1.70022 1.30604 1.23147 1.25570 0.85769 0.79229 0.79304 0.79084 1.19449 1.20202 1.19427 1.21153 1.04420 0.97736 1.02349 1.20643 0.97114 0.91722 0.97427 1.21453 0.90247 0.82929 1.03067 1.21393 0.95173 0.94422 0.89032 1.21885 1.00676 0.94599 1.02680 1.22391 1.01154 1.01800 0.98108 0.95361 0.90807 0.91387 0.89436 0.93656 0.90467 0.89878 0.76760 0.91788 0.91783 0.86941 0.86373 0.91816 0.85453 0.87456 0.88581 0.91214 0.92006 0.91736 0.91470 0.92076 0.91732 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 8.77 60.07 0.53 0.64 16 2 N -0.53 -4.14 4.68 -227.15 -1.06 -5.21 16 3 C 0.04 0.28 5.25 -3.70 -0.02 0.26 16 4 C 0.12 1.01 6.54 -3.60 -0.02 0.98 16 5 N -0.63 -6.98 2.49 -178.47 -0.44 -7.42 16 6 C 0.71 9.94 8.31 -86.91 -0.72 9.21 16 7 O -0.60 -10.45 15.80 5.29 0.08 -10.37 16 8 N -0.74 -9.68 5.46 -66.41 -0.36 -10.05 16 9 C 0.20 2.83 5.80 -5.19 -0.03 2.80 16 10 C -0.21 -3.43 5.25 -104.58 -0.55 -3.97 16 11 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 12 C -0.20 -3.90 9.99 -39.39 -0.39 -4.29 16 13 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 14 O -0.17 -4.76 9.76 0.04 0.00 -4.76 16 15 C -0.39 -10.64 9.49 30.88 0.29 -10.34 16 16 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 18 N -0.86 -24.53 13.67 55.48 0.76 -23.77 16 19 Si 0.94 19.90 29.55 -169.99 -5.02 14.88 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 23 C -0.24 -4.87 9.17 -39.40 -0.36 -5.23 16 24 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 25 C 0.15 1.46 5.24 -3.84 -0.02 1.44 16 26 C 0.09 0.74 0.68 -131.72 -0.09 0.65 16 27 C -0.14 -0.89 8.00 37.16 0.30 -0.60 16 28 C -0.18 -1.57 7.67 37.16 0.28 -1.29 16 29 H 0.03 0.18 6.53 -51.93 -0.34 -0.15 16 30 H 0.07 0.41 6.18 -51.93 -0.32 0.09 16 31 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.09 0.58 8.07 -51.93 -0.42 0.16 16 33 H 0.05 0.40 6.10 -51.93 -0.32 0.08 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.68 5.74 -51.93 -0.30 0.38 16 36 H 0.40 4.66 6.00 -40.82 -0.25 4.41 16 37 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 38 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 39 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 40 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 41 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.13 2.63 5.64 -52.49 -0.30 2.34 16 43 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 44 H 0.10 1.09 7.04 -51.93 -0.37 0.73 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.35 6.31 -51.93 -0.33 0.02 16 47 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 48 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.06 0.65 5.93 -51.93 -0.31 0.35 16 50 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.05 0.44 6.60 -51.93 -0.34 0.10 16 LS Contribution 397.21 15.07 5.99 5.99 Total: -1.00 -31.35 397.21 -9.62 -40.97 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -7.63 Total: 7.58 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -1.93 Total: -7.85 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -1.11 Total: -46.45 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.08 Total: -15.13 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.35 -9.62 -40.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883313045.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.414 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds