Wall clock time and date at job start Wed Apr 1 2020 05:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 110.99966 * 2 1 4 4 C 1.53239 * 109.34222 * 172.73995 * 3 2 1 5 5 N 1.47086 * 108.51767 * 53.82476 * 4 3 2 6 6 C 1.34780 * 120.87833 * 128.81395 * 5 4 3 7 7 O 1.21586 * 120.00233 * 185.33356 * 6 5 4 8 8 N 1.34778 * 119.99860 * 5.34637 * 6 5 4 9 9 C 1.46507 * 119.99643 * 175.03219 * 8 6 5 10 10 C 1.50698 * 109.46653 * 179.97438 * 9 8 6 11 11 C 1.38300 * 119.93216 * 90.00205 * 10 9 8 12 12 C 1.38105 * 120.07007 * 180.29650 * 11 10 9 13 13 C 1.38886 * 119.92838 * 359.46858 * 12 11 10 14 14 O 1.35752 * 120.06874 * 180.25108 * 13 12 11 15 15 C 1.34830 * 116.99853 * 185.61942 * 14 13 12 16 16 H 1.07992 * 120.00324 * 354.97015 * 15 14 13 17 17 C 1.38651 * 119.99535 * 174.96476 * 15 14 13 18 18 N 1.31558 * 120.00661 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00013 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46744 * 59.99993 * 19 17 15 21 21 H 1.48497 * 109.47478 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46898 * 300.00505 * 19 17 15 23 23 C 1.38877 * 119.86064 * 0.52983 * 13 12 11 24 24 C 1.38099 * 119.93174 * 359.72304 * 23 13 12 25 25 C 1.47074 * 118.23914 * 309.09188 * 5 4 3 26 26 C 1.46894 * 111.00521 * 235.69058 * 2 1 3 27 27 C 1.53001 * 109.49239 * 307.22098 * 26 2 1 28 28 C 1.53005 * 109.49068 * 67.26814 * 26 2 1 29 29 H 1.08999 * 109.46884 * 63.95752 * 1 2 3 30 30 H 1.08998 * 109.47080 * 183.95375 * 1 2 3 31 31 H 1.08997 * 109.47584 * 303.95945 * 1 2 3 32 32 H 1.08998 * 109.49610 * 52.78379 * 3 2 1 33 33 H 1.09001 * 109.49377 * 292.69899 * 3 2 1 34 34 H 1.08996 * 109.63059 * 294.12442 * 4 3 2 35 35 H 1.08996 * 109.63045 * 173.53278 * 4 3 2 36 36 H 0.97000 * 120.00342 * 355.03035 * 8 6 5 37 37 H 1.08997 * 109.47361 * 60.00326 * 9 8 6 38 38 H 1.08994 * 109.47333 * 299.99424 * 9 8 6 39 39 H 1.07994 * 119.96771 * 0.02562 * 11 10 9 40 40 H 1.08001 * 120.03756 * 179.72548 * 12 11 10 41 41 H 0.96996 * 120.00748 * 179.97438 * 18 17 15 42 42 H 1.07996 * 120.03340 * 179.70193 * 23 13 12 43 43 H 1.07997 * 119.96730 * 179.97438 * 24 23 13 44 44 H 1.09007 * 109.62807 * 170.62053 * 25 5 4 45 45 H 1.08999 * 109.62846 * 291.19903 * 25 5 4 46 46 H 1.08999 * 109.47620 * 59.99839 * 27 26 2 47 47 H 1.09007 * 109.46586 * 179.97438 * 27 26 2 48 48 H 1.09000 * 109.47013 * 299.99199 * 27 26 2 49 49 H 1.09007 * 109.47035 * 60.00103 * 28 26 2 50 50 H 1.08997 * 109.47371 * 180.02562 * 28 26 2 51 51 H 1.08996 * 109.47134 * 300.00362 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5164 1.3312 0.1827 5 7 4.0870 0.4459 -0.8439 6 6 5.1056 0.8581 -1.6243 7 8 5.5011 0.1516 -2.5313 8 7 5.6861 2.0535 -1.3989 9 6 6.8621 2.4546 -2.1752 10 6 7.3130 3.8229 -1.7329 11 6 8.2332 3.9484 -0.7081 12 6 8.6438 5.2010 -0.2963 13 6 8.1399 6.3351 -0.9199 14 8 8.5454 7.5677 -0.5209 15 6 7.9323 8.6267 -1.0868 16 1 7.2148 8.4752 -1.8796 17 6 8.2228 9.9104 -0.6507 18 7 9.0971 10.0951 0.3148 19 14 7.3728 11.3778 -1.4342 20 1 5.9047 11.2584 -1.2452 21 1 7.8546 12.6285 -0.7948 22 1 7.6838 11.4130 -2.8858 23 6 7.2160 6.2057 -1.9487 24 6 6.8055 4.9505 -2.3523 25 6 3.5124 -0.8989 -1.0006 26 6 1.9956 -0.7730 -1.1327 27 6 1.3641 -2.1666 -1.1373 28 6 1.6582 -0.0553 -2.4413 29 1 -0.3633 0.4512 -0.9233 30 1 -0.3633 -1.0252 0.0709 31 1 -0.3634 0.5740 0.8523 32 1 1.5456 1.9337 0.8182 33 1 1.7556 1.8531 -0.9479 34 1 3.7561 0.9450 1.1734 35 1 3.9255 2.3351 0.0690 36 1 5.3253 2.6482 -0.7229 37 1 6.6063 2.4816 -3.2344 38 1 7.6662 1.7369 -2.0137 39 1 8.6278 3.0660 -0.2264 40 1 9.3591 5.2985 0.5069 41 1 9.3007 10.9932 0.6197 42 1 6.8188 7.0859 -2.4323 43 1 6.0867 4.8492 -3.1520 44 1 3.9189 -1.3687 -1.8963 45 1 3.7517 -1.5035 -0.1258 46 1 0.2821 -2.0750 -1.2319 47 1 1.7548 -2.7396 -1.9783 48 1 1.6054 -2.6779 -0.2054 49 1 2.1090 0.9371 -2.4380 50 1 2.0486 -0.6293 -3.2816 51 1 0.5764 0.0373 -2.5364 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883313045.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:56 Heat of formation + Delta-G solvation = -27.898911 kcal Electronic energy + Delta-G solvation = -30573.615288 eV Core-core repulsion = 26473.558721 eV Total energy + Delta-G solvation = -4100.056568 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.78204 -40.84475 -39.93561 -38.49359 -36.00796 -35.64091 -34.28947 -33.98861 -31.84823 -31.40783 -29.95793 -28.30949 -28.22704 -27.47924 -26.15635 -24.95019 -23.86931 -23.64684 -22.20537 -21.22433 -19.89837 -19.59403 -19.20561 -18.78003 -17.59034 -16.88438 -16.77879 -16.43919 -16.38763 -16.08437 -15.72008 -15.63445 -15.50927 -15.43380 -15.24494 -15.06264 -14.80988 -14.39467 -14.26062 -14.20212 -13.69843 -13.61431 -13.31151 -13.17126 -13.05756 -12.93434 -12.91841 -12.67786 -12.51310 -12.38737 -12.29465 -12.21437 -12.14827 -12.12318 -11.95175 -11.80571 -11.20886 -11.19619 -10.79842 -10.22655 -9.81794 -9.61398 -9.16748 -9.02325 -8.47983 -6.16308 0.52023 0.57464 1.35780 1.44904 1.51540 1.68873 2.11630 2.17190 2.74011 2.88650 2.99759 3.21595 3.48335 3.71018 3.84365 3.84900 3.95808 4.02725 4.04326 4.16953 4.22403 4.26039 4.46038 4.49268 4.53038 4.56627 4.64505 4.66757 4.69897 4.75063 4.78300 4.80693 4.82136 4.91715 4.95307 5.02139 5.03913 5.05810 5.14208 5.23125 5.26208 5.33152 5.43740 5.49593 5.53205 5.68666 5.75397 5.87207 6.01296 6.07633 6.13884 6.15635 6.93985 6.96622 7.52996 7.75649 8.74418 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016499 B = 0.002045 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.629812 B =13687.051251 C =14578.280908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.533 5.533 3 C 0.037 3.963 4 C 0.113 3.887 5 N -0.627 5.627 6 C 0.704 3.296 7 O -0.633 6.633 8 N -0.732 5.732 9 C 0.204 3.796 10 C -0.182 4.182 11 C -0.042 4.042 12 C -0.203 4.203 13 C 0.123 3.877 14 O -0.228 6.228 15 C -0.414 4.414 16 H 0.103 0.897 17 C -0.021 4.021 18 N -0.918 5.918 19 Si 1.017 2.983 20 H -0.256 1.256 21 H -0.273 1.273 22 H -0.258 1.258 23 C -0.243 4.243 24 C -0.045 4.045 25 C 0.144 3.856 26 C 0.094 3.906 27 C -0.136 4.136 28 C -0.170 4.170 29 H 0.026 0.974 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.035 0.965 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.404 0.596 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.147 0.853 40 H 0.116 0.884 41 H 0.273 0.727 42 H 0.121 0.879 43 H 0.136 0.864 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.041 0.959 50 H 0.055 0.945 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.780 -21.343 -0.864 28.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.257 5.257 3 C -0.091 4.091 4 C -0.010 4.010 5 N -0.364 5.364 6 C 0.405 3.595 7 O -0.515 6.515 8 N -0.390 5.390 9 C 0.080 3.920 10 C -0.183 4.183 11 C -0.060 4.060 12 C -0.223 4.223 13 C 0.072 3.928 14 O -0.134 6.134 15 C -0.490 4.490 16 H 0.121 0.879 17 C -0.219 4.219 18 N -0.556 5.556 19 Si 0.836 3.164 20 H -0.181 1.181 21 H -0.198 1.198 22 H -0.183 1.183 23 C -0.262 4.262 24 C -0.064 4.064 25 C 0.021 3.979 26 C 0.004 3.996 27 C -0.194 4.194 28 C -0.228 4.228 29 H 0.044 0.956 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.122 0.878 33 H 0.053 0.947 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.242 0.758 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.165 0.835 40 H 0.134 0.866 41 H 0.082 0.918 42 H 0.138 0.862 43 H 0.154 0.846 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.060 0.940 50 H 0.074 0.926 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.039 -21.837 -0.792 28.335 hybrid contribution -0.301 1.840 -0.697 1.990 sum -18.340 -19.997 -1.489 27.174 Atomic orbital electron populations 1.22514 0.86195 1.03339 1.00830 1.62204 1.08827 1.12934 1.41728 1.22541 0.94564 0.90240 1.01790 1.21890 0.93128 0.94107 0.91857 1.47319 1.34912 1.16702 1.37417 1.15990 0.80079 0.81790 0.81611 1.90867 1.68116 1.57576 1.34903 1.45434 1.32447 1.17995 1.43099 1.19714 0.86415 0.91177 0.94650 1.19474 1.03294 0.94032 1.01501 1.20868 0.94799 0.95654 0.94700 1.20450 1.06606 0.90844 1.04360 1.19988 0.93060 0.86453 0.93260 1.83950 1.56898 1.11635 1.60904 1.21779 1.24288 0.83637 1.19273 0.87941 1.26573 0.97491 1.01063 0.96812 1.70168 1.33382 1.23807 1.28211 0.84670 0.78418 0.74962 0.78335 1.18060 1.19752 1.18278 1.21229 1.04093 0.99025 1.01871 1.20914 0.97097 0.90556 0.97790 1.21539 0.91445 0.82349 1.02563 1.21349 0.94015 0.95507 0.88778 1.21861 1.01174 0.93345 1.03035 1.22332 1.01562 1.00602 0.98352 0.95586 0.89854 0.90541 0.87777 0.94665 0.89523 0.89381 0.75784 0.91660 0.91149 0.83535 0.86586 0.91793 0.86160 0.84588 0.90319 0.90452 0.90942 0.91510 0.91058 0.93967 0.92588 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 8.77 127.69 1.12 1.30 16 2 N -0.53 -7.00 4.68 -872.57 -4.08 -11.08 16 3 C 0.04 0.50 5.25 86.38 0.45 0.95 16 4 C 0.11 1.69 6.54 86.35 0.56 2.26 16 5 N -0.63 -12.71 2.49 -836.82 -2.08 -14.79 16 6 C 0.70 18.51 8.31 179.05 1.49 20.00 16 7 O -0.63 -21.45 15.80 -3.99 -0.06 -21.51 16 8 N -0.73 -17.20 5.46 -482.29 -2.63 -19.84 16 9 C 0.20 5.20 5.80 85.63 0.50 5.69 16 10 C -0.18 -5.28 5.25 -19.83 -0.10 -5.38 16 11 C -0.04 -1.29 9.69 22.25 0.22 -1.08 16 12 C -0.20 -8.10 9.99 22.39 0.22 -7.87 16 13 C 0.12 5.83 6.65 22.58 0.15 5.98 16 14 O -0.23 -13.24 9.76 -22.76 -0.22 -13.46 16 15 C -0.41 -23.33 9.49 67.92 0.64 -22.68 16 16 H 0.10 5.26 5.20 -2.91 -0.02 5.25 16 17 C -0.02 -1.19 5.49 84.83 0.47 -0.72 16 18 N -0.92 -55.13 13.67 21.61 0.30 -54.84 16 19 Si 1.02 41.67 29.55 68.60 2.03 43.69 16 20 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 21 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 22 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 23 C -0.24 -9.94 9.17 22.39 0.21 -9.74 16 24 C -0.05 -1.45 9.69 22.25 0.22 -1.23 16 25 C 0.14 2.66 5.24 86.20 0.45 3.11 16 26 C 0.09 1.36 0.68 3.46 0.00 1.36 16 27 C -0.14 -1.42 8.00 71.98 0.58 -0.85 16 28 C -0.17 -2.81 7.67 71.98 0.55 -2.25 16 29 H 0.03 0.27 6.53 -2.39 -0.02 0.26 16 30 H 0.08 0.67 6.18 -2.39 -0.01 0.66 16 31 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 32 H 0.10 1.06 8.07 -2.39 -0.02 1.05 16 33 H 0.04 0.55 6.10 -2.39 -0.01 0.54 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.09 1.22 5.74 -2.39 -0.01 1.20 16 36 H 0.40 8.27 6.00 -92.71 -0.56 7.72 16 37 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 38 H 0.07 1.79 8.08 -2.39 -0.02 1.77 16 39 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 40 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 41 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 42 H 0.12 5.03 5.64 -2.91 -0.02 5.02 16 43 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 44 H 0.08 1.75 7.04 -2.38 -0.02 1.73 16 45 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.07 0.62 6.31 -2.39 -0.02 0.60 16 47 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 48 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.04 0.85 5.93 -2.38 -0.01 0.84 16 50 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.06 0.93 6.60 -2.39 -0.02 0.91 16 Total: -1.00 -72.09 397.21 1.36 -70.73 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: 0.40 Total: 32.23 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 7.72 Total: -11.14 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -8.50 Total: -100.54 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -0.29 Total: -34.98 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.69 kcal Total: -72.09 1.36 -70.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883313045.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.833 kcal (2) G-P(sol) polarization free energy of solvation -72.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds