Wall clock time and date at job start Wed Apr 1 2020 05:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.51268 * 2 1 4 4 C 1.52883 * 109.58177 * 239.98257 * 2 1 3 5 5 N 1.47151 * 108.60912 * 187.92283 * 4 2 1 6 6 C 1.34775 * 120.98272 * 230.50306 * 5 4 2 7 7 O 1.21276 * 119.99976 * 359.71736 * 6 5 4 8 8 C 1.50704 * 119.99932 * 179.71416 * 6 5 4 9 9 N 1.46901 * 109.47259 * 179.97438 * 8 6 5 10 10 C 1.46898 * 110.99720 * 66.04641 * 9 8 6 11 11 C 1.50699 * 109.47155 * 193.95501 * 10 9 8 12 12 H 1.08004 * 119.99782 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00305 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99927 * 179.97438 * 13 11 10 15 15 Si 1.86790 * 119.99730 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47312 * 89.99882 * 15 13 11 17 17 H 1.48504 * 109.47106 * 209.99798 * 15 13 11 18 18 H 1.48503 * 109.47573 * 329.99827 * 15 13 11 19 19 C 1.46898 * 110.99845 * 190.00318 * 9 8 6 20 20 C 1.50707 * 109.46592 * 170.00327 * 19 9 8 21 21 C 1.38227 * 119.62024 * 94.97729 * 20 19 9 22 22 C 1.38627 * 119.15702 * 179.78495 * 21 20 19 23 23 C 1.38669 * 118.42389 * 0.47826 * 22 21 20 24 24 C 1.38186 * 119.16143 * 359.49762 * 23 22 21 25 25 N 1.31856 * 119.61172 * 274.99481 * 20 19 9 26 26 C 1.47160 * 118.03257 * 50.22372 * 5 4 2 27 27 C 1.53289 * 108.38830 * 309.71991 * 26 5 4 28 28 O 1.42959 * 109.51262 * 120.10235 * 2 1 3 29 29 H 1.08998 * 109.47292 * 299.89479 * 1 2 3 30 30 H 1.09001 * 109.46852 * 59.90004 * 1 2 3 31 31 H 1.08999 * 109.47106 * 179.89598 * 1 2 3 32 32 H 1.08998 * 109.47324 * 180.10176 * 3 2 1 33 33 H 1.09003 * 109.47443 * 300.10316 * 3 2 1 34 34 H 1.09005 * 109.47163 * 60.10461 * 3 2 1 35 35 H 1.09004 * 109.61804 * 68.10304 * 4 2 1 36 36 H 1.08996 * 109.52611 * 307.68976 * 4 2 1 37 37 H 1.09005 * 109.47002 * 60.00024 * 8 6 5 38 38 H 1.08999 * 109.47250 * 300.00557 * 8 6 5 39 39 H 1.09002 * 109.47442 * 313.95778 * 10 9 8 40 40 H 1.08997 * 109.47281 * 73.95810 * 10 9 8 41 41 H 0.97004 * 119.99712 * 179.97438 * 14 13 11 42 42 H 1.08993 * 109.47549 * 49.99892 * 19 9 8 43 43 H 1.08997 * 109.47171 * 289.99469 * 19 9 8 44 44 H 1.07998 * 120.41916 * 359.97438 * 21 20 19 45 45 H 1.08008 * 120.78688 * 180.22921 * 22 21 20 46 46 H 1.08002 * 120.42244 * 179.78279 * 23 22 21 47 47 H 1.07996 * 119.61757 * 180.25243 * 24 23 22 48 48 H 1.09001 * 109.67850 * 69.44325 * 26 5 4 49 49 H 1.09001 * 109.67781 * 189.99380 * 26 5 4 50 50 H 1.08993 * 109.51287 * 172.22405 * 27 26 5 51 51 H 1.09003 * 109.51221 * 292.37668 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 6 2.0424 -0.7206 -1.2472 5 7 3.5011 -0.8768 -1.1333 6 6 4.3193 -0.5044 -2.1375 7 8 3.8554 -0.0373 -3.1560 8 6 5.8106 -0.6683 -1.9946 9 7 6.4747 -0.1933 -3.2157 10 6 6.2967 1.2553 -3.3822 11 6 6.6803 1.6507 -4.7849 12 1 7.0217 0.9006 -5.4831 13 6 6.5954 2.9698 -5.1771 14 7 6.9306 3.3147 -6.4011 15 14 6.0056 4.2670 -3.9694 16 1 7.1686 4.8203 -3.2301 17 1 5.3245 5.3593 -4.7098 18 1 5.0548 3.6527 -3.0082 19 6 7.8992 -0.5520 -3.2138 20 6 8.4895 -0.2719 -4.5719 21 6 9.1289 0.9314 -4.8039 22 6 9.6724 1.1771 -6.0553 23 6 9.5430 0.2032 -7.0339 24 6 8.8905 -0.9760 -6.7283 25 7 8.3896 -1.1775 -5.5250 26 6 4.0406 -1.4458 0.1120 27 6 3.4312 -0.6850 1.2951 28 8 2.0075 -0.6758 1.1657 29 1 -0.3634 0.5122 0.8909 30 1 -0.3633 0.5154 -0.8891 31 1 -0.3633 -1.0277 -0.0019 32 1 3.1310 1.4413 -0.0018 33 1 1.6766 1.9568 -0.8891 34 1 1.6796 1.9557 0.8910 35 1 1.8043 -0.1324 -2.1335 36 1 1.5727 -1.7015 -1.3200 37 1 6.0471 -1.7209 -1.8387 38 1 6.1598 -0.0873 -1.1410 39 1 5.2536 1.5162 -3.2036 40 1 6.9304 1.7835 -2.6698 41 1 6.8705 4.2428 -6.6771 42 1 8.0068 -1.6116 -2.9823 43 1 8.4217 0.0391 -2.4617 44 1 9.2069 1.6694 -4.0193 45 1 10.1809 2.1068 -6.2644 46 1 9.9510 0.3623 -8.0212 47 1 8.7891 -1.7411 -7.4837 48 1 3.7756 -2.5010 0.1784 49 1 5.1252 -1.3376 0.1254 50 1 3.7090 -1.1777 2.2267 51 1 3.8030 0.3397 1.2993 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929799748.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:19 Heat of formation + Delta-G solvation = -3.767354 kcal Electronic energy + Delta-G solvation = -32428.126898 eV Core-core repulsion = 28329.116753 eV Total energy + Delta-G solvation = -4099.010145 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.62180 -39.45008 -38.58008 -36.19098 -34.72909 -33.90852 -32.54790 -31.43477 -30.93585 -29.25963 -28.79354 -27.64111 -27.52209 -25.85019 -23.74702 -23.51070 -22.45340 -21.70523 -20.37348 -19.86906 -18.89526 -17.18792 -16.99022 -16.71429 -15.90943 -15.82427 -15.63778 -15.36289 -15.06512 -14.98194 -14.61284 -14.44301 -14.21054 -13.72124 -13.65429 -13.43958 -13.11671 -12.82543 -12.67801 -12.49691 -12.38036 -12.23508 -12.12929 -12.10732 -12.01523 -11.86716 -11.62084 -11.50434 -11.37466 -11.30291 -10.78621 -10.66119 -10.54664 -10.29214 -10.12217 -9.84487 -9.46779 -9.16254 -8.80388 -8.50377 -8.46102 -8.42802 -7.63148 -7.46810 -5.99771 -3.88270 2.13680 2.42877 2.89992 2.97861 3.25091 3.35102 3.39238 3.48513 4.39420 4.44281 4.50127 4.66153 4.67902 4.76047 4.89698 4.93724 5.02257 5.06744 5.20461 5.32617 5.33554 5.38649 5.44495 5.48828 5.51137 5.53374 5.62916 5.66290 5.68770 5.72085 5.77491 5.77937 5.93385 5.94999 6.00373 6.07267 6.12412 6.33327 6.44063 6.60413 6.69673 6.77976 6.90035 6.98035 7.14740 7.27669 7.40398 7.67014 7.74211 7.83346 7.94368 8.52863 8.69008 9.03048 9.12211 9.59828 11.10157 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013832 B = 0.003521 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.797199 B = 7951.036870 C = 9146.080904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.099 3.901 3 C -0.176 4.176 4 C 0.093 3.907 5 N -0.626 5.626 6 C 0.514 3.486 7 O -0.491 6.491 8 C 0.041 3.959 9 N -0.503 5.503 10 C 0.154 3.846 11 C -0.488 4.488 12 H 0.097 0.903 13 C 0.071 3.929 14 N -0.886 5.886 15 Si 0.863 3.137 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.269 1.269 19 C 0.120 3.880 20 C 0.150 3.850 21 C -0.080 4.080 22 C -0.078 4.078 23 C -0.166 4.166 24 C 0.066 3.934 25 N -0.479 5.479 26 C 0.075 3.925 27 C 0.043 3.957 28 O -0.373 6.373 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.051 0.949 39 H 0.047 0.953 40 H -0.023 1.023 41 H 0.260 0.740 42 H 0.075 0.925 43 H 0.038 0.962 44 H 0.118 0.882 45 H 0.117 0.883 46 H 0.115 0.885 47 H 0.137 0.863 48 H 0.075 0.925 49 H 0.094 0.906 50 H 0.104 0.896 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.198 -7.877 14.929 17.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 C -0.233 4.233 4 C -0.030 4.030 5 N -0.365 5.365 6 C 0.301 3.699 7 O -0.362 6.362 8 C -0.091 4.091 9 N -0.227 5.227 10 C 0.028 3.972 11 C -0.525 4.525 12 H 0.115 0.885 13 C -0.131 4.131 14 N -0.525 5.525 15 Si 0.691 3.309 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.194 1.194 19 C -0.008 4.008 20 C 0.010 3.990 21 C -0.101 4.101 22 C -0.104 4.104 23 C -0.187 4.187 24 C -0.089 4.089 25 N -0.189 5.189 26 C -0.049 4.049 27 C -0.034 4.034 28 O -0.292 6.292 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.119 0.881 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.069 0.931 39 H 0.065 0.935 40 H -0.005 1.005 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.056 0.944 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.133 0.867 47 H 0.154 0.846 48 H 0.094 0.906 49 H 0.112 0.888 50 H 0.122 0.878 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.193 -8.544 14.082 16.997 hybrid contribution 0.467 2.385 0.814 2.563 sum -3.726 -6.159 14.897 16.545 Atomic orbital electron populations 1.21713 0.91623 1.03032 1.02933 1.21818 0.95176 0.91699 0.85428 1.22367 1.02221 0.95859 1.02869 1.22108 0.80535 1.01237 0.99121 1.48186 1.06379 1.65208 1.16690 1.20745 0.89048 0.77484 0.82610 1.90783 1.76620 1.41207 1.27560 1.21914 0.91508 1.01720 0.93968 1.61704 1.10417 1.18615 1.32014 1.20456 0.97411 0.81620 0.97743 1.21382 1.41277 0.94164 0.95718 0.88549 1.24798 0.95516 0.97966 0.94803 1.69893 1.48231 1.17488 1.16885 0.87040 0.79447 0.82263 0.82147 1.20667 1.21301 1.19403 1.20722 0.87947 0.99897 0.92234 1.20381 0.93728 0.90524 0.94360 1.21469 0.94974 0.95719 0.97932 1.21075 0.98695 0.97643 0.92963 1.21780 1.01955 0.95579 0.99349 1.22220 0.96588 0.96372 0.93742 1.67250 1.16855 1.33796 1.00960 1.22373 0.99788 0.98323 0.84373 1.22985 0.81827 1.00456 0.98141 1.87972 1.20610 1.76959 1.43634 0.91494 0.90670 0.91595 0.92004 0.91111 0.91843 0.88087 0.91130 0.88662 0.93142 0.93532 1.00527 0.92955 0.90677 0.94400 0.86430 0.86541 0.86669 0.84572 0.90626 0.88814 0.87813 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.85 37.16 0.33 -0.89 16 2 C 0.10 1.10 1.11 -90.68 -0.10 1.00 16 3 C -0.18 -2.09 8.08 37.15 0.30 -1.79 16 4 C 0.09 1.20 5.27 -3.75 -0.02 1.18 16 5 N -0.63 -8.55 2.55 -172.52 -0.44 -8.99 16 6 C 0.51 9.13 7.30 -10.98 -0.08 9.05 16 7 O -0.49 -11.29 13.92 5.56 0.08 -11.21 16 8 C 0.04 0.66 3.82 -4.97 -0.02 0.64 16 9 N -0.50 -10.57 4.30 -238.96 -1.03 -11.59 16 10 C 0.15 3.73 3.33 -4.98 -0.02 3.71 16 11 C -0.49 -13.45 6.32 -34.44 -0.22 -13.67 16 12 H 0.10 2.90 5.17 -52.48 -0.27 2.63 16 13 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 14 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 15 Si 0.86 21.56 27.47 -169.99 -4.67 16.89 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 18 H -0.27 -6.72 6.54 56.52 0.37 -6.35 16 19 C 0.12 2.25 5.28 -4.97 -0.03 2.22 16 20 C 0.15 3.19 4.01 -82.58 -0.33 2.86 16 21 C -0.08 -1.71 6.30 -39.44 -0.25 -1.96 16 22 C -0.08 -1.61 10.11 -39.28 -0.40 -2.01 16 23 C -0.17 -3.25 10.11 -39.44 -0.40 -3.64 16 24 C 0.07 1.32 11.18 -17.55 -0.20 1.13 16 25 N -0.48 -10.43 10.16 -9.47 -0.10 -10.52 16 26 C 0.08 0.72 6.54 -3.53 -0.02 0.70 16 27 C 0.04 0.39 6.60 37.31 0.25 0.64 16 28 O -0.37 -4.15 10.23 -35.23 -0.36 -4.51 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.82 6.12 -51.93 -0.32 0.50 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 1.51 7.07 -51.93 -0.37 1.14 16 36 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 37 H 0.10 1.26 7.80 -51.93 -0.41 0.85 16 38 H 0.05 0.71 7.64 -51.93 -0.40 0.31 16 39 H 0.05 1.23 4.85 -51.93 -0.25 0.98 16 40 H -0.02 -0.53 7.41 -51.93 -0.38 -0.92 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 43 H 0.04 0.64 7.91 -51.93 -0.41 0.23 16 44 H 0.12 2.46 7.98 -52.49 -0.42 2.04 16 45 H 0.12 2.26 8.06 -52.48 -0.42 1.83 16 46 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 47 H 0.14 2.30 8.06 -52.49 -0.42 1.88 16 48 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.09 0.75 6.05 -51.93 -0.31 0.44 16 50 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.06 0.57 6.25 -51.93 -0.32 0.24 16 LS Contribution 392.83 15.07 5.92 5.92 Total: -1.00 -35.04 392.83 -9.21 -44.25 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -8.09 Total: 3.99 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -1.30 Total: 1.06 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.79 Total: -56.39 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.28 Total: -15.72 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.04 -9.21 -44.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929799748.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.487 kcal (2) G-P(sol) polarization free energy of solvation -35.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds