Wall clock time and date at job start Wed Apr 1 2020 05:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.51268 * 2 1 4 4 C 1.52883 * 109.58177 * 239.98257 * 2 1 3 5 5 N 1.47151 * 108.60912 * 187.92283 * 4 2 1 6 6 C 1.34775 * 120.98272 * 230.50306 * 5 4 2 7 7 O 1.21276 * 119.99976 * 359.71736 * 6 5 4 8 8 C 1.50704 * 119.99932 * 179.71416 * 6 5 4 9 9 N 1.46901 * 109.47259 * 179.97438 * 8 6 5 10 10 C 1.46898 * 110.99720 * 66.04641 * 9 8 6 11 11 C 1.50699 * 109.47155 * 193.95501 * 10 9 8 12 12 H 1.08004 * 119.99782 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00305 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99927 * 179.97438 * 13 11 10 15 15 Si 1.86790 * 119.99730 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47312 * 89.99882 * 15 13 11 17 17 H 1.48504 * 109.47106 * 209.99798 * 15 13 11 18 18 H 1.48503 * 109.47573 * 329.99827 * 15 13 11 19 19 C 1.46898 * 110.99845 * 190.00318 * 9 8 6 20 20 C 1.50707 * 109.46592 * 170.00327 * 19 9 8 21 21 C 1.38227 * 119.62024 * 94.97729 * 20 19 9 22 22 C 1.38627 * 119.15702 * 179.78495 * 21 20 19 23 23 C 1.38669 * 118.42389 * 0.47826 * 22 21 20 24 24 C 1.38186 * 119.16143 * 359.49762 * 23 22 21 25 25 N 1.31856 * 119.61172 * 274.99481 * 20 19 9 26 26 C 1.47160 * 118.03257 * 50.22372 * 5 4 2 27 27 C 1.53289 * 108.38830 * 309.71991 * 26 5 4 28 28 O 1.42959 * 109.51262 * 120.10235 * 2 1 3 29 29 H 1.08998 * 109.47292 * 299.89479 * 1 2 3 30 30 H 1.09001 * 109.46852 * 59.90004 * 1 2 3 31 31 H 1.08999 * 109.47106 * 179.89598 * 1 2 3 32 32 H 1.08998 * 109.47324 * 180.10176 * 3 2 1 33 33 H 1.09003 * 109.47443 * 300.10316 * 3 2 1 34 34 H 1.09005 * 109.47163 * 60.10461 * 3 2 1 35 35 H 1.09004 * 109.61804 * 68.10304 * 4 2 1 36 36 H 1.08996 * 109.52611 * 307.68976 * 4 2 1 37 37 H 1.09005 * 109.47002 * 60.00024 * 8 6 5 38 38 H 1.08999 * 109.47250 * 300.00557 * 8 6 5 39 39 H 1.09002 * 109.47442 * 313.95778 * 10 9 8 40 40 H 1.08997 * 109.47281 * 73.95810 * 10 9 8 41 41 H 0.97004 * 119.99712 * 179.97438 * 14 13 11 42 42 H 1.08993 * 109.47549 * 49.99892 * 19 9 8 43 43 H 1.08997 * 109.47171 * 289.99469 * 19 9 8 44 44 H 1.07998 * 120.41916 * 359.97438 * 21 20 19 45 45 H 1.08008 * 120.78688 * 180.22921 * 22 21 20 46 46 H 1.08002 * 120.42244 * 179.78279 * 23 22 21 47 47 H 1.07996 * 119.61757 * 180.25243 * 24 23 22 48 48 H 1.09001 * 109.67850 * 69.44325 * 26 5 4 49 49 H 1.09001 * 109.67781 * 189.99380 * 26 5 4 50 50 H 1.08993 * 109.51287 * 172.22405 * 27 26 5 51 51 H 1.09003 * 109.51221 * 292.37668 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 6 2.0424 -0.7206 -1.2472 5 7 3.5011 -0.8768 -1.1333 6 6 4.3193 -0.5044 -2.1375 7 8 3.8554 -0.0373 -3.1560 8 6 5.8106 -0.6683 -1.9946 9 7 6.4747 -0.1933 -3.2157 10 6 6.2967 1.2553 -3.3822 11 6 6.6803 1.6507 -4.7849 12 1 7.0217 0.9006 -5.4831 13 6 6.5954 2.9698 -5.1771 14 7 6.9306 3.3147 -6.4011 15 14 6.0056 4.2670 -3.9694 16 1 7.1686 4.8203 -3.2301 17 1 5.3245 5.3593 -4.7098 18 1 5.0548 3.6527 -3.0082 19 6 7.8992 -0.5520 -3.2138 20 6 8.4895 -0.2719 -4.5719 21 6 9.1289 0.9314 -4.8039 22 6 9.6724 1.1771 -6.0553 23 6 9.5430 0.2032 -7.0339 24 6 8.8905 -0.9760 -6.7283 25 7 8.3896 -1.1775 -5.5250 26 6 4.0406 -1.4458 0.1120 27 6 3.4312 -0.6850 1.2951 28 8 2.0075 -0.6758 1.1657 29 1 -0.3634 0.5122 0.8909 30 1 -0.3633 0.5154 -0.8891 31 1 -0.3633 -1.0277 -0.0019 32 1 3.1310 1.4413 -0.0018 33 1 1.6766 1.9568 -0.8891 34 1 1.6796 1.9557 0.8910 35 1 1.8043 -0.1324 -2.1335 36 1 1.5727 -1.7015 -1.3200 37 1 6.0471 -1.7209 -1.8387 38 1 6.1598 -0.0873 -1.1410 39 1 5.2536 1.5162 -3.2036 40 1 6.9304 1.7835 -2.6698 41 1 6.8705 4.2428 -6.6771 42 1 8.0068 -1.6116 -2.9823 43 1 8.4217 0.0391 -2.4617 44 1 9.2069 1.6694 -4.0193 45 1 10.1809 2.1068 -6.2644 46 1 9.9510 0.3623 -8.0212 47 1 8.7891 -1.7411 -7.4837 48 1 3.7756 -2.5010 0.1784 49 1 5.1252 -1.3376 0.1254 50 1 3.7090 -1.1777 2.2267 51 1 3.8030 0.3397 1.2993 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929799748.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:18 Heat of formation + Delta-G solvation = -28.955359 kcal Electronic energy + Delta-G solvation = -32429.219132 eV Core-core repulsion = 28329.116753 eV Total energy + Delta-G solvation = -4100.102379 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.69383 -40.97772 -39.80941 -37.71532 -35.85211 -34.77676 -34.56324 -33.02367 -32.48996 -30.48851 -30.12164 -29.13790 -28.38231 -27.08695 -25.31687 -24.36184 -24.05802 -23.43233 -21.86161 -21.00173 -19.97637 -18.97247 -18.38570 -17.70998 -17.39201 -17.11028 -16.82988 -16.72631 -16.44076 -16.15599 -15.99948 -15.81904 -15.64553 -15.05400 -15.00793 -14.67537 -14.60974 -14.25315 -14.16242 -13.90503 -13.79461 -13.54686 -13.34009 -13.15979 -13.12162 -12.98885 -12.94264 -12.76009 -12.64116 -12.45970 -12.25043 -12.20707 -12.01832 -11.80871 -11.54599 -11.35578 -11.05182 -10.75107 -10.64674 -10.28304 -10.06121 -9.52591 -9.31001 -9.00033 -8.12866 -6.03965 0.56371 0.81041 1.25627 1.32442 1.39762 1.66995 1.82831 2.37723 2.70526 2.97639 3.20314 3.48276 3.53346 3.64264 3.71940 3.79286 3.92282 4.01488 4.09707 4.17587 4.25606 4.28429 4.32020 4.34658 4.48151 4.49780 4.52962 4.56191 4.60988 4.67356 4.70952 4.74175 4.75887 4.85092 4.88463 4.89495 4.93981 5.05229 5.07142 5.11520 5.17957 5.24225 5.45927 5.54526 5.66870 5.70786 5.99238 6.16689 6.17219 6.25415 6.42941 6.69273 6.94384 7.27413 7.43640 7.47288 8.99035 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013832 B = 0.003521 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.797199 B = 7951.036870 C = 9146.080904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.105 3.895 3 C -0.173 4.173 4 C 0.089 3.911 5 N -0.619 5.619 6 C 0.508 3.492 7 O -0.559 6.559 8 C 0.041 3.959 9 N -0.529 5.529 10 C 0.169 3.831 11 C -0.482 4.482 12 H 0.068 0.932 13 C 0.024 3.976 14 N -0.925 5.925 15 Si 0.916 3.084 16 H -0.263 1.263 17 H -0.293 1.293 18 H -0.272 1.272 19 C 0.120 3.880 20 C 0.138 3.862 21 C -0.097 4.097 22 C -0.088 4.088 23 C -0.173 4.173 24 C 0.059 3.941 25 N -0.499 5.499 26 C 0.068 3.932 27 C 0.040 3.960 28 O -0.378 6.378 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.132 0.868 38 H 0.081 0.919 39 H 0.023 0.977 40 H -0.015 1.015 41 H 0.258 0.742 42 H 0.101 0.899 43 H 0.059 0.941 44 H 0.115 0.885 45 H 0.122 0.878 46 H 0.142 0.858 47 H 0.165 0.835 48 H 0.094 0.906 49 H 0.115 0.885 50 H 0.137 0.863 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.937 -9.293 17.779 20.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.065 3.935 3 C -0.231 4.231 4 C -0.034 4.034 5 N -0.355 5.355 6 C 0.296 3.704 7 O -0.435 6.435 8 C -0.089 4.089 9 N -0.254 5.254 10 C 0.042 3.958 11 C -0.521 4.521 12 H 0.086 0.914 13 C -0.174 4.174 14 N -0.566 5.566 15 Si 0.743 3.257 16 H -0.188 1.188 17 H -0.219 1.219 18 H -0.198 1.198 19 C -0.007 4.007 20 C -0.001 4.001 21 C -0.117 4.117 22 C -0.114 4.114 23 C -0.193 4.193 24 C -0.097 4.097 25 N -0.210 5.210 26 C -0.053 4.053 27 C -0.037 4.037 28 O -0.297 6.297 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.150 0.850 38 H 0.098 0.902 39 H 0.041 0.959 40 H 0.002 0.998 41 H 0.067 0.933 42 H 0.119 0.881 43 H 0.077 0.923 44 H 0.133 0.867 45 H 0.140 0.860 46 H 0.160 0.840 47 H 0.182 0.818 48 H 0.112 0.888 49 H 0.133 0.867 50 H 0.155 0.845 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.924 -9.999 17.019 20.125 hybrid contribution 0.409 2.678 -0.080 2.710 sum -3.515 -7.321 16.939 18.785 Atomic orbital electron populations 1.21723 0.90034 1.03797 1.03526 1.21757 0.96354 0.90728 0.84693 1.22348 1.01186 0.96712 1.02851 1.22181 0.80477 1.01630 0.99088 1.48240 1.06425 1.63739 1.17111 1.21134 0.90086 0.76718 0.82416 1.90757 1.77713 1.44605 1.30446 1.22060 0.89964 1.04051 0.92846 1.61453 1.12116 1.16330 1.35481 1.20092 0.95733 0.84222 0.95760 1.21500 1.40244 0.93442 0.96870 0.91441 1.25392 0.96079 0.99858 0.96108 1.70016 1.50423 1.17612 1.18522 0.86191 0.79325 0.79884 0.80325 1.18771 1.21903 1.19754 1.20842 0.86749 1.01797 0.91335 1.20822 0.93459 0.90334 0.95514 1.21566 0.95871 0.96074 0.98211 1.21341 0.98574 0.98200 0.93316 1.22104 1.01750 0.95139 1.00337 1.22783 0.95680 0.97237 0.93960 1.67315 1.17463 1.34424 1.01754 1.22739 1.01093 0.99125 0.82377 1.23202 0.80697 1.00536 0.99259 1.87977 1.21914 1.76741 1.43094 0.90534 0.90482 0.90752 0.93502 0.92567 0.90375 0.90963 0.89967 0.85030 0.90184 0.95931 0.99758 0.93260 0.88084 0.92291 0.86742 0.86017 0.83984 0.81810 0.88783 0.86692 0.84484 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.85 71.98 0.64 -1.56 16 2 C 0.10 2.20 1.11 -10.83 -0.01 2.19 16 3 C -0.17 -4.03 8.08 71.98 0.58 -3.45 16 4 C 0.09 2.26 5.27 86.22 0.45 2.72 16 5 N -0.62 -15.98 2.55 -818.14 -2.08 -18.07 16 6 C 0.51 17.70 7.30 87.66 0.64 18.34 16 7 O -0.56 -26.53 13.92 -3.02 -0.04 -26.57 16 8 C 0.04 1.23 3.82 85.56 0.33 1.56 16 9 N -0.53 -21.60 4.30 -909.94 -3.91 -25.51 16 10 C 0.17 8.17 3.33 85.56 0.28 8.46 16 11 C -0.48 -27.04 6.32 25.60 0.16 -26.88 16 12 H 0.07 4.15 5.17 -2.91 -0.02 4.14 16 13 C 0.02 1.35 5.47 84.66 0.46 1.82 16 14 N -0.92 -55.75 13.96 21.45 0.30 -55.45 16 15 Si 0.92 45.18 27.47 68.60 1.88 47.06 16 16 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 17 H -0.29 -14.56 7.11 99.48 0.71 -13.86 16 18 H -0.27 -13.47 6.54 99.48 0.65 -12.82 16 19 C 0.12 4.26 5.28 85.56 0.45 4.71 16 20 C 0.14 5.81 4.01 42.55 0.17 5.98 16 21 C -0.10 -4.14 6.30 22.36 0.14 -4.00 16 22 C -0.09 -3.68 10.11 22.47 0.23 -3.45 16 23 C -0.17 -6.68 10.11 22.36 0.23 -6.45 16 24 C 0.06 2.30 11.18 84.67 0.95 3.25 16 25 N -0.50 -21.48 10.16 -183.88 -1.87 -23.34 16 26 C 0.07 1.08 6.54 86.35 0.57 1.64 16 27 C 0.04 0.59 6.60 72.08 0.48 1.06 16 28 O -0.38 -7.36 10.23 -148.98 -1.52 -8.89 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 1.21 6.12 -2.39 -0.01 1.20 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.07 2.27 7.07 -2.38 -0.02 2.25 16 36 H 0.08 1.86 8.13 -2.39 -0.02 1.84 16 37 H 0.13 2.93 7.80 -2.38 -0.02 2.91 16 38 H 0.08 1.95 7.64 -2.39 -0.02 1.93 16 39 H 0.02 1.22 4.85 -2.39 -0.01 1.21 16 40 H -0.02 -0.69 7.41 -2.39 -0.02 -0.71 16 41 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 42 H 0.10 3.01 7.93 -2.39 -0.02 2.99 16 43 H 0.06 1.82 7.91 -2.39 -0.02 1.80 16 44 H 0.11 4.84 7.98 -2.91 -0.02 4.81 16 45 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 46 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 47 H 0.16 5.30 8.06 -2.91 -0.02 5.28 16 48 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.11 1.32 6.05 -2.39 -0.01 1.31 16 50 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.05 0.87 6.25 -2.39 -0.01 0.86 16 Total: -1.00 -79.33 392.83 0.36 -78.97 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.87 Total: 25.88 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 6.74 Total: 5.92 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -7.57 Total: -122.38 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -1.57 Total: -35.46 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.06 kcal Total: -79.33 0.36 -78.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929799748.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.018 kcal (2) G-P(sol) polarization free energy of solvation -79.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds