Wall clock time and date at job start Wed Apr 1 2020 05:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.52635 * 2 1 4 4 C 1.53198 * 109.49388 * 239.92167 * 2 1 3 5 5 N 1.46932 * 108.77394 * 185.41626 * 4 2 1 6 6 C 1.36934 * 120.62848 * 233.58446 * 5 4 2 7 7 H 1.08004 * 119.99966 * 151.84628 * 6 5 4 8 8 C 1.38810 * 119.99928 * 331.84748 * 6 5 4 9 9 N 1.31617 * 120.00134 * 343.06477 * 8 6 5 10 10 Si 1.86804 * 119.99766 * 163.06449 * 8 6 5 11 11 H 1.48498 * 109.47054 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46972 * 119.99920 * 10 8 6 13 13 H 1.48492 * 109.47198 * 239.99972 * 10 8 6 14 14 C 1.46926 * 118.74050 * 53.60476 * 5 4 2 15 15 C 1.53193 * 108.77681 * 306.39562 * 14 5 4 16 16 C 1.53033 * 109.49921 * 120.08417 * 2 1 3 17 17 H 1.08996 * 109.45098 * 61.29896 * 16 2 1 18 18 N 1.46504 * 109.46007 * 301.33412 * 16 2 1 19 19 C 1.34778 * 120.00137 * 154.92986 * 18 16 2 20 20 O 1.21696 * 119.99949 * 0.02562 * 19 18 16 21 21 C 1.46681 * 119.99750 * 180.02562 * 19 18 16 22 22 C 1.38159 * 126.18584 * 180.02562 * 21 19 18 23 23 C 1.38938 * 106.94525 * 179.97438 * 22 21 19 24 24 C 1.36268 * 108.02660 * 0.04459 * 23 22 21 25 25 N 1.34744 * 108.83650 * 359.92819 * 24 23 22 26 26 H 0.96998 * 125.71392 * 180.02562 * 25 24 23 27 27 C 1.51089 * 122.58776 * 179.89266 * 24 23 22 28 28 C 1.53540 * 107.71942 * 344.10116 * 27 24 23 29 29 O 1.42982 * 109.69661 * 48.00875 * 28 27 24 30 30 C 1.43415 * 114.34879 * 288.98789 * 29 28 27 31 31 H 1.09000 * 109.47200 * 299.92393 * 1 2 3 32 32 H 1.09005 * 109.47289 * 59.91577 * 1 2 3 33 33 H 1.08996 * 109.47668 * 179.91886 * 1 2 3 34 34 H 1.09001 * 109.46925 * 180.08359 * 3 2 1 35 35 H 1.09007 * 109.47186 * 300.07911 * 3 2 1 36 36 H 1.08994 * 109.47458 * 60.08098 * 3 2 1 37 37 H 1.08992 * 109.58815 * 65.62948 * 4 2 1 38 38 H 1.08996 * 109.70227 * 305.26910 * 4 2 1 39 39 H 0.97002 * 119.99569 * 180.02562 * 9 8 6 40 40 H 1.08990 * 109.58926 * 186.60520 * 14 5 4 41 41 H 1.09004 * 109.70251 * 66.24879 * 14 5 4 42 42 H 1.09005 * 109.49245 * 294.68230 * 15 14 5 43 43 H 1.08994 * 109.52482 * 174.60246 * 15 14 5 44 44 H 0.97002 * 119.99576 * 334.93208 * 18 16 2 45 45 H 1.07999 * 126.53027 * 359.97438 * 22 21 19 46 46 H 1.09001 * 109.81411 * 224.54871 * 27 24 23 47 47 H 1.08995 * 109.80953 * 103.65410 * 27 24 23 48 48 H 1.09004 * 109.43634 * 168.08348 * 28 27 24 49 49 H 1.09001 * 109.43206 * 287.94139 * 28 27 24 50 50 H 1.08998 * 109.76025 * 291.12332 * 30 29 28 51 51 H 1.08994 * 109.77829 * 170.34846 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0412 -0.7238 -1.2497 5 7 3.5045 -0.8292 -1.1697 6 6 4.2935 -0.3794 -2.1946 7 1 5.2961 -0.0328 -1.9922 8 6 3.8045 -0.3689 -3.4937 9 7 2.7412 -1.0806 -3.8024 10 14 4.6556 0.6552 -4.8037 11 1 5.8192 1.3571 -4.2049 12 1 5.1232 -0.2317 -5.8991 13 1 3.7014 1.6540 -5.3487 14 6 4.1053 -1.4268 0.0306 15 6 3.5708 -0.6952 1.2659 16 6 2.0408 -0.7231 1.2482 17 1 1.6967 -1.7572 1.2350 18 7 1.5266 -0.0530 2.4453 19 6 1.3972 -0.7387 3.5984 20 8 1.7080 -1.9143 3.6453 21 6 0.8818 -0.0678 4.7966 22 6 0.6983 -0.6441 6.0388 23 6 0.1956 0.3458 6.8742 24 6 0.0792 1.4923 6.1469 25 7 0.4933 1.2524 4.8873 26 1 0.5140 1.8996 4.1651 27 6 -0.4415 2.7816 6.7380 28 6 -1.1429 2.4397 8.0603 29 8 -0.3052 1.5856 8.8434 30 6 -0.1785 0.2516 8.3323 31 1 -0.3633 0.5126 0.8907 32 1 -0.3634 0.5152 -0.8893 33 1 -0.3634 -1.0276 -0.0015 34 1 3.1314 1.4409 -0.0015 35 1 1.6773 1.9566 -0.8893 36 1 1.6797 1.9558 0.8906 37 1 1.7637 -0.1579 -2.1389 38 1 1.6053 -1.7215 -1.3007 39 1 2.3998 -1.0735 -4.7103 40 1 5.1895 -1.3248 -0.0139 41 1 3.8396 -2.4824 0.0878 42 1 3.9160 0.3387 1.2539 43 1 3.9334 -1.1893 2.1672 44 1 1.2792 0.8842 2.4079 45 1 0.9060 -1.6689 6.3091 46 1 -1.1518 3.2424 6.0515 47 1 0.3879 3.4635 6.9253 48 1 -1.3425 3.3578 8.6130 49 1 -2.0841 1.9315 7.8507 50 1 -1.1274 -0.2745 8.4361 51 1 0.6002 -0.2803 8.8789 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940795524.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:55 Heat of formation + Delta-G solvation = -20.533651 kcal Electronic energy + Delta-G solvation = -31587.078445 eV Core-core repulsion = 27487.341259 eV Total energy + Delta-G solvation = -4099.737186 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.90788 -39.87951 -38.45122 -37.76526 -34.66922 -33.00658 -32.77977 -32.14731 -31.64197 -29.69184 -29.00332 -26.86403 -26.19169 -25.85982 -24.77911 -23.93689 -22.64592 -21.56235 -20.64148 -20.14760 -19.37008 -18.93519 -17.81029 -16.89534 -16.58922 -16.17607 -15.78867 -15.58819 -15.04523 -14.91156 -14.68052 -14.37049 -14.05294 -13.91950 -13.86235 -13.58893 -13.39322 -13.34957 -13.21873 -12.85301 -12.69673 -12.43161 -12.30840 -11.74617 -11.72516 -11.56338 -11.36875 -11.27645 -11.11173 -10.93551 -10.71900 -10.64249 -10.29578 -10.18106 -10.14404 -10.05891 -9.96305 -9.71472 -9.47504 -9.09354 -8.78953 -8.50008 -8.18456 -6.70617 -5.83056 -3.25091 1.31229 2.34228 2.70179 3.25638 3.33608 3.40588 3.41989 3.43627 3.50554 4.24222 4.45735 4.46074 4.68588 4.75679 4.83081 4.92845 5.10200 5.15288 5.16646 5.22578 5.23694 5.35374 5.42521 5.49805 5.52269 5.53483 5.72322 5.81658 5.85722 5.89937 5.99309 6.03843 6.15556 6.23181 6.34008 6.39630 6.43363 6.47125 6.55085 6.63164 6.65556 6.78652 6.80650 6.87150 6.93585 6.98866 7.08407 7.26812 7.55707 7.65099 7.77000 8.28781 8.40966 9.17212 9.80316 10.37476 11.25683 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025266 B = 0.002285 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.942047 B =12250.320662 C =12635.809678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 C -0.126 4.126 4 C 0.186 3.814 5 N -0.589 5.589 6 C -0.249 4.249 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.902 5.902 10 Si 0.900 3.100 11 H -0.278 1.278 12 H -0.290 1.290 13 H -0.289 1.289 14 C 0.147 3.853 15 C -0.143 4.143 16 C 0.165 3.835 17 H 0.084 0.916 18 N -0.720 5.720 19 C 0.585 3.415 20 O -0.529 6.529 21 C -0.049 4.049 22 C -0.091 4.091 23 C -0.221 4.221 24 C 0.050 3.950 25 N -0.524 5.524 26 H 0.415 0.585 27 C -0.087 4.087 28 C 0.069 3.931 29 O -0.380 6.380 30 C 0.137 3.863 31 H 0.039 0.961 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.025 0.975 37 H 0.093 0.907 38 H 0.021 0.979 39 H 0.253 0.747 40 H 0.056 0.944 41 H 0.021 0.979 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.388 0.612 45 H 0.150 0.850 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.102 0.898 49 H 0.057 0.943 50 H 0.062 0.938 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.616 8.733 21.017 24.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.100 4.100 3 C -0.183 4.183 4 C 0.059 3.941 5 N -0.311 5.311 6 C -0.379 4.379 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.546 5.546 10 Si 0.730 3.270 11 H -0.203 1.203 12 H -0.217 1.217 13 H -0.216 1.216 14 C 0.020 3.980 15 C -0.183 4.183 16 C 0.061 3.939 17 H 0.102 0.898 18 N -0.370 5.370 19 C 0.371 3.629 20 O -0.405 6.405 21 C -0.162 4.162 22 C -0.117 4.117 23 C -0.228 4.228 24 C -0.069 4.069 25 N -0.119 5.119 26 H 0.253 0.747 27 C -0.125 4.125 28 C -0.008 4.008 29 O -0.299 6.299 30 C 0.060 3.940 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.044 0.956 37 H 0.111 0.889 38 H 0.039 0.961 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.039 0.961 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.222 0.778 45 H 0.168 0.832 46 H 0.104 0.896 47 H 0.107 0.893 48 H 0.120 0.880 49 H 0.075 0.925 50 H 0.080 0.920 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.315 7.976 20.850 24.188 hybrid contribution 0.147 1.211 -1.531 1.958 sum -9.167 9.186 19.318 23.273 Atomic orbital electron populations 1.21759 0.95421 1.01458 1.00494 1.21576 0.94418 0.96753 0.97217 1.21743 1.02730 0.94718 0.99144 1.20822 0.83183 0.96846 0.93206 1.44056 1.01611 1.69221 1.16242 1.19195 0.97928 1.35110 0.85667 0.91651 1.25036 0.98514 0.99024 0.96985 1.70031 1.25680 1.40230 1.18691 0.86265 0.78929 0.79968 0.81881 1.20284 1.21730 1.21618 1.20877 0.96699 0.94334 0.86097 1.22453 0.94662 1.01580 0.99610 1.21044 0.93920 0.96860 0.82026 0.89833 1.46255 1.66187 1.13876 1.10705 1.17025 0.78028 0.86250 0.81579 1.90848 1.50522 1.15062 1.84100 1.20690 1.14145 0.84058 0.97260 1.20814 1.01087 0.99436 0.90326 1.19913 1.11449 0.93941 0.97493 1.20214 1.04652 0.97471 0.84555 1.41634 1.49611 1.10257 1.10381 0.74720 1.21020 1.01149 0.92782 0.97582 1.22530 0.92567 0.95049 0.90691 1.88015 1.69429 1.22413 1.50021 1.21052 1.00816 0.83516 0.88607 0.94180 0.92514 0.92902 0.90959 0.92814 0.95624 0.88881 0.96128 0.93665 0.92520 0.96140 0.91934 0.92644 0.77802 0.83191 0.89574 0.89274 0.88041 0.92498 0.92004 0.87900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.31 37.16 0.31 -1.72 16 2 C -0.10 -1.68 0.56 -154.39 -0.09 -1.77 16 3 C -0.13 -2.04 7.83 37.16 0.29 -1.75 16 4 C 0.19 4.19 3.98 -3.70 -0.01 4.18 16 5 N -0.59 -14.12 2.43 -172.32 -0.42 -14.54 16 6 C -0.25 -6.59 9.58 -15.06 -0.14 -6.73 16 7 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 8 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 9 N -0.90 -25.46 11.20 55.49 0.62 -24.84 16 10 Si 0.90 21.18 29.59 -169.99 -5.03 16.15 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.15 3.09 6.52 -3.71 -0.02 3.07 16 15 C -0.14 -2.57 5.31 -26.61 -0.14 -2.71 16 16 C 0.16 2.80 1.57 -67.89 -0.11 2.70 16 17 H 0.08 1.63 7.57 -51.93 -0.39 1.24 16 18 N -0.72 -10.07 4.28 -55.07 -0.24 -10.31 16 19 C 0.58 8.96 7.75 -12.85 -0.10 8.86 16 20 O -0.53 -10.08 16.54 5.19 0.09 -10.00 16 21 C -0.05 -0.62 7.06 -81.75 -0.58 -1.20 16 22 C -0.09 -1.11 10.63 -39.35 -0.42 -1.53 16 23 C -0.22 -2.33 6.02 -105.01 -0.63 -2.96 16 24 C 0.05 0.47 7.14 -81.83 -0.58 -0.11 16 25 N -0.52 -5.02 5.97 -5.43 -0.03 -5.05 16 26 H 0.42 2.91 8.19 -40.82 -0.33 2.57 16 27 C -0.09 -0.54 6.56 -27.41 -0.18 -0.72 16 28 C 0.07 0.43 6.78 37.44 0.25 0.68 16 29 O -0.38 -3.44 10.74 -35.23 -0.38 -3.82 16 30 C 0.14 1.17 7.25 36.07 0.26 1.43 16 31 H 0.04 0.51 7.36 -51.93 -0.38 0.13 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.32 5.97 -51.93 -0.31 1.01 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.02 0.32 6.58 -51.93 -0.34 -0.02 16 37 H 0.09 2.35 6.06 -51.93 -0.31 2.04 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 1.10 6.34 -51.93 -0.33 0.77 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.39 4.43 5.79 -40.82 -0.24 4.20 16 45 H 0.15 1.78 8.06 -52.49 -0.42 1.35 16 46 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 50 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 393.55 15.07 5.93 5.93 Total: -1.00 -31.95 393.55 -9.53 -41.48 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -8.10 Total: 5.28 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -1.98 Total: -0.29 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.07 Total: -54.74 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.29 Total: -13.81 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.95 -9.53 -41.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940795524.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.951 kcal (2) G-P(sol) polarization free energy of solvation -31.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds