Wall clock time and date at job start Wed Apr 1 2020 05:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.52635 * 2 1 4 4 C 1.53198 * 109.49388 * 239.92167 * 2 1 3 5 5 N 1.46932 * 108.77394 * 185.41626 * 4 2 1 6 6 C 1.36934 * 120.62848 * 233.58446 * 5 4 2 7 7 H 1.08004 * 119.99966 * 151.84628 * 6 5 4 8 8 C 1.38810 * 119.99928 * 331.84748 * 6 5 4 9 9 N 1.31617 * 120.00134 * 343.06477 * 8 6 5 10 10 Si 1.86804 * 119.99766 * 163.06449 * 8 6 5 11 11 H 1.48498 * 109.47054 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46972 * 119.99920 * 10 8 6 13 13 H 1.48492 * 109.47198 * 239.99972 * 10 8 6 14 14 C 1.46926 * 118.74050 * 53.60476 * 5 4 2 15 15 C 1.53193 * 108.77681 * 306.39562 * 14 5 4 16 16 C 1.53033 * 109.49921 * 120.08417 * 2 1 3 17 17 H 1.08996 * 109.45098 * 61.29896 * 16 2 1 18 18 N 1.46504 * 109.46007 * 301.33412 * 16 2 1 19 19 C 1.34778 * 120.00137 * 154.92986 * 18 16 2 20 20 O 1.21696 * 119.99949 * 0.02562 * 19 18 16 21 21 C 1.46681 * 119.99750 * 180.02562 * 19 18 16 22 22 C 1.38159 * 126.18584 * 180.02562 * 21 19 18 23 23 C 1.38938 * 106.94525 * 179.97438 * 22 21 19 24 24 C 1.36268 * 108.02660 * 0.04459 * 23 22 21 25 25 N 1.34744 * 108.83650 * 359.92819 * 24 23 22 26 26 H 0.96998 * 125.71392 * 180.02562 * 25 24 23 27 27 C 1.51089 * 122.58776 * 179.89266 * 24 23 22 28 28 C 1.53540 * 107.71942 * 344.10116 * 27 24 23 29 29 O 1.42982 * 109.69661 * 48.00875 * 28 27 24 30 30 C 1.43415 * 114.34879 * 288.98789 * 29 28 27 31 31 H 1.09000 * 109.47200 * 299.92393 * 1 2 3 32 32 H 1.09005 * 109.47289 * 59.91577 * 1 2 3 33 33 H 1.08996 * 109.47668 * 179.91886 * 1 2 3 34 34 H 1.09001 * 109.46925 * 180.08359 * 3 2 1 35 35 H 1.09007 * 109.47186 * 300.07911 * 3 2 1 36 36 H 1.08994 * 109.47458 * 60.08098 * 3 2 1 37 37 H 1.08992 * 109.58815 * 65.62948 * 4 2 1 38 38 H 1.08996 * 109.70227 * 305.26910 * 4 2 1 39 39 H 0.97002 * 119.99569 * 180.02562 * 9 8 6 40 40 H 1.08990 * 109.58926 * 186.60520 * 14 5 4 41 41 H 1.09004 * 109.70251 * 66.24879 * 14 5 4 42 42 H 1.09005 * 109.49245 * 294.68230 * 15 14 5 43 43 H 1.08994 * 109.52482 * 174.60246 * 15 14 5 44 44 H 0.97002 * 119.99576 * 334.93208 * 18 16 2 45 45 H 1.07999 * 126.53027 * 359.97438 * 22 21 19 46 46 H 1.09001 * 109.81411 * 224.54871 * 27 24 23 47 47 H 1.08995 * 109.80953 * 103.65410 * 27 24 23 48 48 H 1.09004 * 109.43634 * 168.08348 * 28 27 24 49 49 H 1.09001 * 109.43206 * 287.94139 * 28 27 24 50 50 H 1.08998 * 109.76025 * 291.12332 * 30 29 28 51 51 H 1.08994 * 109.77829 * 170.34846 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0412 -0.7238 -1.2497 5 7 3.5045 -0.8292 -1.1697 6 6 4.2935 -0.3794 -2.1946 7 1 5.2961 -0.0328 -1.9922 8 6 3.8045 -0.3689 -3.4937 9 7 2.7412 -1.0806 -3.8024 10 14 4.6556 0.6552 -4.8037 11 1 5.8192 1.3571 -4.2049 12 1 5.1232 -0.2317 -5.8991 13 1 3.7014 1.6540 -5.3487 14 6 4.1053 -1.4268 0.0306 15 6 3.5708 -0.6952 1.2659 16 6 2.0408 -0.7231 1.2482 17 1 1.6967 -1.7572 1.2350 18 7 1.5266 -0.0530 2.4453 19 6 1.3972 -0.7387 3.5984 20 8 1.7080 -1.9143 3.6453 21 6 0.8818 -0.0678 4.7966 22 6 0.6983 -0.6441 6.0388 23 6 0.1956 0.3458 6.8742 24 6 0.0792 1.4923 6.1469 25 7 0.4933 1.2524 4.8873 26 1 0.5140 1.8996 4.1651 27 6 -0.4415 2.7816 6.7380 28 6 -1.1429 2.4397 8.0603 29 8 -0.3052 1.5856 8.8434 30 6 -0.1785 0.2516 8.3323 31 1 -0.3633 0.5126 0.8907 32 1 -0.3634 0.5152 -0.8893 33 1 -0.3634 -1.0276 -0.0015 34 1 3.1314 1.4409 -0.0015 35 1 1.6773 1.9566 -0.8893 36 1 1.6797 1.9558 0.8906 37 1 1.7637 -0.1579 -2.1389 38 1 1.6053 -1.7215 -1.3007 39 1 2.3998 -1.0735 -4.7103 40 1 5.1895 -1.3248 -0.0139 41 1 3.8396 -2.4824 0.0878 42 1 3.9160 0.3387 1.2539 43 1 3.9334 -1.1893 2.1672 44 1 1.2792 0.8842 2.4079 45 1 0.9060 -1.6689 6.3091 46 1 -1.1518 3.2424 6.0515 47 1 0.3879 3.4635 6.9253 48 1 -1.3425 3.3578 8.6130 49 1 -2.0841 1.9315 7.8507 50 1 -1.1274 -0.2745 8.4361 51 1 0.6002 -0.2803 8.8789 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940795524.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:53 Heat of formation + Delta-G solvation = -41.040787 kcal Electronic energy + Delta-G solvation = -31587.967701 eV Core-core repulsion = 27487.341259 eV Total energy + Delta-G solvation = -4100.626442 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.73232 -41.20634 -39.53423 -38.75732 -36.33755 -34.41166 -33.88093 -33.40922 -32.54337 -31.25627 -29.92317 -28.19656 -27.65015 -27.32640 -26.00493 -24.75203 -23.93027 -22.69437 -22.32949 -21.24668 -20.24247 -19.90778 -19.30689 -18.54341 -17.33025 -17.12995 -16.87597 -16.78270 -16.48287 -15.97924 -15.82375 -15.57251 -15.36937 -15.19081 -15.00732 -14.97855 -14.71801 -14.48558 -14.36327 -14.01489 -13.88354 -13.47909 -13.28946 -13.10673 -13.01966 -12.92318 -12.76448 -12.66019 -12.43666 -12.37083 -12.36453 -11.92527 -11.86364 -11.75453 -11.70267 -11.39342 -11.32015 -11.06496 -10.75393 -10.55842 -10.13580 -9.88664 -9.01422 -8.69350 -7.87745 -5.32995 0.36377 1.45456 1.48241 1.52757 1.58100 1.90391 2.09465 2.30349 2.50616 2.97779 3.27550 3.59523 3.65109 3.69253 3.81316 3.93696 3.98640 4.04670 4.07009 4.20709 4.30490 4.36623 4.40139 4.52783 4.57251 4.61049 4.66426 4.74169 4.78812 4.82091 4.83405 4.90322 4.93117 4.96792 4.99929 5.02292 5.06394 5.12387 5.19654 5.27258 5.29122 5.39489 5.46752 5.59463 5.66714 5.68093 5.72431 5.78092 6.24529 6.35960 6.38830 6.53629 7.12019 7.14365 7.83462 8.37055 9.19184 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025266 B = 0.002285 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.942047 B =12250.320662 C =12635.809678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.086 4.086 3 C -0.120 4.120 4 C 0.194 3.806 5 N -0.602 5.602 6 C -0.255 4.255 7 H 0.066 0.934 8 C -0.048 4.048 9 N -0.935 5.935 10 Si 0.964 3.036 11 H -0.267 1.267 12 H -0.296 1.296 13 H -0.288 1.288 14 C 0.144 3.856 15 C -0.128 4.128 16 C 0.177 3.823 17 H 0.054 0.946 18 N -0.705 5.705 19 C 0.587 3.413 20 O -0.575 6.575 21 C -0.074 4.074 22 C -0.100 4.100 23 C -0.239 4.239 24 C 0.066 3.934 25 N -0.510 5.510 26 H 0.429 0.571 27 C -0.085 4.085 28 C 0.061 3.939 29 O -0.398 6.398 30 C 0.137 3.863 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.040 0.960 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.065 0.935 38 H -0.014 1.014 39 H 0.250 0.750 40 H 0.058 0.942 41 H 0.004 0.996 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.405 0.595 45 H 0.143 0.857 46 H 0.114 0.886 47 H 0.099 0.901 48 H 0.126 0.874 49 H 0.063 0.937 50 H 0.073 0.927 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.553 12.142 22.974 28.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 C -0.177 4.177 4 C 0.068 3.932 5 N -0.325 5.325 6 C -0.385 4.385 7 H 0.084 0.916 8 C -0.243 4.243 9 N -0.581 5.581 10 Si 0.792 3.208 11 H -0.191 1.191 12 H -0.224 1.224 13 H -0.215 1.215 14 C 0.017 3.983 15 C -0.168 4.168 16 C 0.072 3.928 17 H 0.073 0.927 18 N -0.356 5.356 19 C 0.376 3.624 20 O -0.455 6.455 21 C -0.186 4.186 22 C -0.127 4.127 23 C -0.245 4.245 24 C -0.055 4.055 25 N -0.106 5.106 26 H 0.269 0.731 27 C -0.122 4.122 28 C -0.016 4.016 29 O -0.316 6.316 30 C 0.060 3.940 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.004 0.996 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.022 0.978 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.242 0.758 45 H 0.161 0.839 46 H 0.132 0.868 47 H 0.118 0.882 48 H 0.143 0.857 49 H 0.081 0.919 50 H 0.091 0.909 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.255 11.436 22.820 27.508 hybrid contribution 0.423 0.117 -2.041 2.088 sum -9.832 11.553 20.779 25.727 Atomic orbital electron populations 1.21720 0.93399 1.01327 1.02202 1.21335 0.95948 0.97042 0.94501 1.21670 1.01407 0.93620 1.01036 1.20618 0.82574 0.95177 0.94850 1.44269 1.02106 1.69547 1.16551 1.19481 0.98210 1.34415 0.86426 0.91586 1.25753 0.99421 1.00228 0.98891 1.70190 1.27264 1.41841 1.18788 0.85261 0.78177 0.78271 0.79059 1.19103 1.22374 1.21456 1.20952 0.96904 0.93791 0.86607 1.22253 0.95272 1.01596 0.97699 1.20633 0.93240 0.95705 0.83180 0.92737 1.45899 1.65829 1.14439 1.09389 1.17311 0.77144 0.85714 0.82207 1.90825 1.52615 1.17174 1.84853 1.20180 1.16670 0.85622 0.96173 1.20962 1.01084 0.99754 0.90882 1.20185 1.11806 0.93952 0.98534 1.20829 1.02250 0.98442 0.83979 1.41544 1.48784 1.09252 1.11051 0.73060 1.21205 1.02067 0.91147 0.97824 1.22805 0.92321 0.95650 0.90814 1.87998 1.70162 1.22634 1.50849 1.21095 1.01497 0.83893 0.87471 0.90868 0.92305 0.94076 0.92941 0.93439 0.91198 0.91670 0.99608 0.94122 0.92329 0.97796 0.90752 0.92495 0.75808 0.83945 0.86789 0.88243 0.85657 0.91913 0.90943 0.87618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.74 8.31 71.98 0.60 -3.15 16 2 C -0.09 -2.95 0.56 -52.11 -0.03 -2.97 16 3 C -0.12 -3.63 7.83 71.98 0.56 -3.07 16 4 C 0.19 9.09 3.98 86.36 0.34 9.44 16 5 N -0.60 -29.72 2.43 -699.09 -1.70 -31.41 16 6 C -0.26 -13.71 9.58 84.03 0.81 -12.90 16 7 H 0.07 3.48 7.89 -2.91 -0.02 3.46 16 8 C -0.05 -2.60 4.92 84.86 0.42 -2.19 16 9 N -0.93 -54.54 11.20 21.65 0.24 -54.30 16 10 Si 0.96 44.06 29.59 68.60 2.03 46.09 16 11 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 12 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 13 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 14 C 0.14 6.24 6.52 86.36 0.56 6.80 16 15 C -0.13 -4.59 5.31 30.67 0.16 -4.43 16 16 C 0.18 6.00 1.57 45.02 0.07 6.07 16 17 H 0.05 2.21 7.57 -2.39 -0.02 2.19 16 18 N -0.70 -18.52 4.28 -446.37 -1.91 -20.43 16 19 C 0.59 17.60 7.75 86.45 0.67 18.27 16 20 O -0.57 -22.40 16.54 -4.33 -0.07 -22.47 16 21 C -0.07 -1.78 7.06 40.37 0.29 -1.49 16 22 C -0.10 -2.40 10.63 22.42 0.24 -2.16 16 23 C -0.24 -4.58 6.02 -20.11 -0.12 -4.70 16 24 C 0.07 1.02 7.14 41.78 0.30 1.32 16 25 N -0.51 -8.16 5.97 -171.10 -1.02 -9.19 16 26 H 0.43 4.19 8.19 -92.71 -0.76 3.44 16 27 C -0.08 -0.68 6.56 30.15 0.20 -0.48 16 28 C 0.06 0.53 6.78 72.16 0.49 1.02 16 29 O -0.40 -6.14 10.74 -148.98 -1.60 -7.74 16 30 C 0.14 2.10 7.25 71.28 0.52 2.62 16 31 H 0.07 1.64 7.36 -2.39 -0.02 1.63 16 32 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.05 1.82 5.97 -2.39 -0.01 1.80 16 35 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.07 1.48 6.58 -2.39 -0.02 1.46 16 37 H 0.06 3.42 6.06 -2.39 -0.01 3.41 16 38 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 39 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 40 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 41 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 42 H 0.07 2.51 6.34 -2.38 -0.02 2.50 16 43 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.40 7.83 5.79 -92.71 -0.54 7.29 16 45 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 46 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 47 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.13 0.49 8.14 -2.38 -0.02 0.47 16 49 H 0.06 0.48 8.09 -2.39 -0.02 0.46 16 50 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -72.80 393.55 1.70 -71.11 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -0.34 Total: 20.35 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 6.07 Total: 8.00 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -4.39 Total: -115.33 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -1.67 Total: -30.21 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -72.80 1.70 -71.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940795524.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.066 kcal (2) G-P(sol) polarization free energy of solvation -72.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds