Wall clock time and date at job start Wed Apr 1 2020 05:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00480 * 2 1 4 4 C 1.50696 * 109.47443 * 179.97438 * 3 2 1 5 5 C 1.38350 * 120.34761 * 269.97867 * 4 3 2 6 6 N 1.31932 * 121.08087 * 180.02562 * 5 4 3 7 7 C 1.31689 * 121.87667 * 359.76221 * 6 5 4 8 8 C 1.39521 * 120.56867 * 0.50014 * 7 6 5 9 9 C 1.47840 * 120.56024 * 179.77001 * 8 7 6 10 10 O 1.21559 * 120.00013 * 179.72546 * 9 8 7 11 11 N 1.34772 * 120.00216 * 359.71928 * 9 8 7 12 12 C 1.46496 * 120.00284 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.46022 * 34.98010 * 12 11 9 14 14 C 1.53042 * 109.46338 * 275.00358 * 12 11 9 15 15 C 1.53187 * 109.31387 * 178.61305 * 14 12 11 16 16 N 1.46923 * 108.77603 * 54.63563 * 15 14 12 17 17 C 1.36944 * 120.63179 * 126.37051 * 16 15 14 18 18 H 1.08006 * 119.99668 * 331.59560 * 17 16 15 19 19 C 1.38807 * 120.00333 * 151.60135 * 17 16 15 20 20 N 1.31617 * 120.00050 * 160.73351 * 19 17 16 21 21 Si 1.86804 * 119.99858 * 340.73940 * 19 17 16 22 22 H 1.48495 * 109.47308 * 95.16163 * 21 19 17 23 23 H 1.48498 * 109.46832 * 215.16270 * 21 19 17 24 24 H 1.48500 * 109.46907 * 335.16135 * 21 19 17 25 25 C 1.46926 * 118.74241 * 306.64172 * 16 15 14 26 26 C 1.52760 * 109.00434 * 53.30762 * 25 16 15 27 27 C 1.53004 * 109.56806 * 185.55696 * 26 25 16 28 28 C 1.53000 * 109.36056 * 65.50252 * 26 25 16 29 29 C 1.38358 * 120.35061 * 90.00040 * 4 3 2 30 30 H 1.08995 * 109.47533 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46785 * 300.00546 * 1 2 3 32 32 H 1.09000 * 109.46638 * 59.99903 * 1 2 3 33 33 H 1.08998 * 109.47384 * 59.99613 * 3 2 1 34 34 H 1.09007 * 109.47167 * 300.00123 * 3 2 1 35 35 H 1.08006 * 119.46196 * 0.02562 * 5 4 3 36 36 H 1.08005 * 119.72005 * 180.24637 * 7 6 5 37 37 H 0.97000 * 120.00158 * 0.02562 * 11 9 8 38 38 H 1.09003 * 109.49481 * 58.66143 * 14 12 11 39 39 H 1.09004 * 109.52173 * 298.58261 * 14 12 11 40 40 H 1.09003 * 109.58966 * 294.85073 * 15 14 12 41 41 H 1.09003 * 109.70567 * 174.49212 * 15 14 12 42 42 H 0.97004 * 119.99787 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.58939 * 173.14384 * 25 16 15 44 44 H 1.09007 * 109.58531 * 293.57508 * 25 16 15 45 45 H 1.08989 * 109.47870 * 179.97438 * 27 26 25 46 46 H 1.09007 * 109.46654 * 299.96941 * 27 26 25 47 47 H 1.09001 * 109.46763 * 59.95866 * 27 26 25 48 48 H 1.09001 * 109.46895 * 300.15902 * 28 26 25 49 49 H 1.09003 * 109.47218 * 60.15877 * 28 26 25 50 50 H 1.08999 * 109.47090 * 180.15937 * 28 26 25 51 51 H 1.08001 * 120.85221 * 359.95434 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.2090 1.1318 1.1949 6 7 5.5241 1.0281 1.2123 7 6 6.2317 0.9673 0.1033 8 6 5.6050 1.0217 -1.1421 9 6 6.4000 0.9586 -2.3869 10 8 5.8431 1.0018 -3.4666 11 7 7.7422 0.8532 -2.3248 12 6 8.5299 0.7900 -3.5584 13 1 8.0644 1.4168 -4.3190 14 6 8.5858 -0.6568 -4.0542 15 6 9.3809 -0.7136 -5.3624 16 7 10.6975 -0.0997 -5.1427 17 6 11.8449 -0.7795 -5.4534 18 1 11.8594 -1.8589 -5.4185 19 6 12.9894 -0.0814 -5.8133 20 7 14.1663 -0.6667 -5.7440 21 14 12.8594 1.6887 -6.3957 22 1 13.0929 2.6050 -5.2507 23 1 13.8779 1.9401 -7.4466 24 1 11.5038 1.9281 -6.9528 25 6 10.7599 1.2550 -4.5775 26 6 9.9493 1.2920 -3.2833 27 6 9.8901 2.7273 -2.7565 28 6 10.6162 0.3920 -2.2412 29 6 4.2100 1.1309 -1.1930 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5139 -0.8900 33 1 1.6887 1.8464 0.8899 34 1 1.6887 1.8464 -0.8900 35 1 3.6671 1.1748 2.1282 36 1 7.3067 0.8787 0.1582 37 1 8.1866 0.8184 -1.4633 38 1 7.5733 -1.0213 -4.2276 39 1 9.0735 -1.2801 -3.3046 40 1 8.8470 -0.1653 -6.1386 41 1 9.5084 -1.7515 -5.6701 42 1 14.9661 -0.1789 -5.9958 43 1 11.7969 1.5150 -4.3651 44 1 10.3407 1.9672 -5.2884 45 1 9.3111 2.7521 -1.8335 46 1 10.9012 3.0844 -2.5607 47 1 9.4162 3.3680 -3.5002 48 1 10.6591 -0.6300 -2.6179 49 1 11.6270 0.7499 -2.0455 50 1 10.0375 0.4148 -1.3177 51 1 3.6917 1.1711 -2.1397 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940807059.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:01 Heat of formation + Delta-G solvation = -19.234064 kcal Electronic energy + Delta-G solvation = -31273.751143 eV Core-core repulsion = 27174.070312 eV Total energy + Delta-G solvation = -4099.680832 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.04343 -39.89040 -38.38590 -38.03643 -34.88242 -33.50619 -33.13801 -32.46445 -31.85845 -30.04398 -27.94132 -26.95986 -26.33938 -26.00206 -25.65113 -24.11745 -23.06448 -22.50070 -20.58840 -20.42642 -18.87755 -17.95562 -17.33058 -17.11236 -16.89906 -16.55500 -15.97945 -15.73155 -15.48081 -15.16501 -14.97392 -14.39132 -14.30609 -13.99578 -13.78760 -13.66322 -13.50204 -13.35985 -13.25682 -12.90633 -12.78317 -12.48128 -12.33321 -12.06559 -11.93458 -11.78486 -11.73008 -11.27360 -11.14301 -10.80229 -10.70962 -10.46423 -10.38278 -10.25470 -10.22442 -10.17406 -9.91091 -9.77811 -9.63170 -9.54164 -9.45815 -8.84945 -8.63852 -6.96858 -5.95614 -3.32987 0.29128 0.74856 2.66182 3.05428 3.29871 3.30590 3.48263 3.50924 3.67606 3.92135 4.28085 4.35205 4.47397 4.51760 4.52297 4.67792 4.78647 4.88742 4.89666 4.92139 4.93935 5.09039 5.17952 5.22805 5.23053 5.25135 5.41429 5.64272 5.66775 5.70719 5.73221 5.82376 5.89868 5.98946 6.05826 6.12416 6.19620 6.24405 6.30750 6.38502 6.44160 6.56597 6.59990 6.62483 6.66797 6.70562 6.80319 6.99435 7.43564 7.49321 7.95926 8.14768 8.32396 8.92896 9.70963 10.08779 11.20239 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024330 B = 0.002318 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.582041 B =12077.828598 C =12439.085271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.108 3.892 4 C -0.153 4.153 5 C 0.140 3.860 6 N -0.486 5.486 7 C 0.140 3.860 8 C -0.183 4.183 9 C 0.560 3.440 10 O -0.534 6.534 11 N -0.712 5.712 12 C 0.164 3.836 13 H 0.085 0.915 14 C -0.145 4.145 15 C 0.151 3.849 16 N -0.603 5.603 17 C -0.257 4.257 18 H 0.086 0.914 19 C 0.025 3.975 20 N -0.908 5.908 21 Si 0.879 3.121 22 H -0.289 1.289 23 H -0.303 1.303 24 H -0.268 1.268 25 C 0.141 3.859 26 C -0.090 4.090 27 C -0.140 4.140 28 C -0.131 4.131 29 C 0.003 3.997 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.161 0.839 36 H 0.160 0.840 37 H 0.396 0.604 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.025 0.975 41 H 0.066 0.934 42 H 0.262 0.738 43 H 0.076 0.924 44 H 0.027 0.973 45 H 0.050 0.950 46 H 0.057 0.943 47 H 0.052 0.948 48 H 0.076 0.924 49 H 0.056 0.944 50 H 0.034 0.966 51 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.586 5.912 14.954 28.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.031 3.969 4 C -0.156 4.156 5 C -0.017 4.017 6 N -0.193 5.193 7 C -0.018 4.018 8 C -0.188 4.188 9 C 0.346 3.654 10 O -0.412 6.412 11 N -0.363 5.363 12 C 0.060 3.940 13 H 0.103 0.897 14 C -0.185 4.185 15 C 0.024 3.976 16 N -0.326 5.326 17 C -0.385 4.385 18 H 0.103 0.897 19 C -0.174 4.174 20 N -0.551 5.551 21 Si 0.709 3.291 22 H -0.217 1.217 23 H -0.232 1.232 24 H -0.193 1.193 25 C 0.015 3.985 26 C -0.093 4.093 27 C -0.198 4.198 28 C -0.188 4.188 29 C -0.023 4.023 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.178 0.822 36 H 0.177 0.823 37 H 0.232 0.768 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.043 0.957 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.045 0.955 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.095 0.905 49 H 0.075 0.925 50 H 0.053 0.947 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -23.220 5.727 14.912 28.184 hybrid contribution -0.327 1.290 -0.678 1.493 sum -23.547 7.017 14.234 28.396 Atomic orbital electron populations 1.22790 0.80507 1.03153 1.00162 1.87986 1.19998 1.27020 1.95449 1.21227 0.88533 0.85513 1.01641 1.20567 0.95912 1.04851 0.94226 1.22899 0.89934 0.91310 0.97554 1.67767 1.07836 1.12876 1.30857 1.23063 1.00373 0.91545 0.86857 1.21114 0.95158 1.07331 0.95183 1.17970 0.82417 0.76925 0.88136 1.90788 1.70933 1.50027 1.29439 1.46219 1.05841 1.73539 1.10739 1.21020 0.90145 0.97745 0.85072 0.89723 1.22461 1.00195 0.95587 1.00297 1.20899 0.85708 0.98000 0.92972 1.44348 1.02119 1.14271 1.71859 1.18893 0.86723 0.92209 1.40656 0.89678 1.25293 0.95397 0.97581 0.99161 1.69820 0.97355 1.37572 1.50379 0.86993 0.77400 0.86276 0.78421 1.21681 1.23177 1.19313 1.21316 0.98729 0.87749 0.90747 1.21313 0.94142 0.94863 0.98951 1.21841 1.01683 0.95935 1.00361 1.21792 0.99652 1.01578 0.95803 1.21644 0.92506 0.89237 0.98930 0.89325 0.93853 0.93787 0.91717 0.91790 0.82186 0.82251 0.76755 0.92217 0.91258 0.95718 0.91510 0.92805 0.90571 0.95507 0.93136 0.92353 0.92894 0.90465 0.92484 0.94727 0.83356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.30 10.69 -35.23 -0.38 -3.68 16 3 C 0.11 0.73 6.08 36.00 0.22 0.95 16 4 C -0.15 -1.35 5.52 -104.54 -0.58 -1.93 16 5 C 0.14 1.22 10.85 -17.47 -0.19 1.03 16 6 N -0.49 -5.06 10.35 -12.91 -0.13 -5.19 16 7 C 0.14 1.41 10.71 -17.13 -0.18 1.23 16 8 C -0.18 -2.08 5.89 -104.82 -0.62 -2.70 16 9 C 0.56 7.72 7.75 -12.33 -0.10 7.62 16 10 O -0.53 -9.17 16.08 5.31 0.09 -9.09 16 11 N -0.71 -9.16 4.24 -54.71 -0.23 -9.39 16 12 C 0.16 2.56 1.57 -67.89 -0.11 2.46 16 13 H 0.08 1.48 7.57 -51.93 -0.39 1.09 16 14 C -0.15 -2.43 5.31 -26.61 -0.14 -2.57 16 15 C 0.15 2.95 6.52 -3.71 -0.02 2.93 16 16 N -0.60 -13.73 2.20 -172.58 -0.38 -14.11 16 17 C -0.26 -6.92 10.03 -15.06 -0.15 -7.07 16 18 H 0.09 2.47 8.06 -52.48 -0.42 2.04 16 19 C 0.02 0.70 5.25 -17.43 -0.09 0.60 16 20 N -0.91 -27.34 13.97 55.49 0.78 -26.57 16 21 Si 0.88 22.04 24.36 -169.99 -4.14 17.90 16 22 H -0.29 -6.97 6.74 56.52 0.38 -6.59 16 23 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 24 H -0.27 -6.63 6.41 56.52 0.36 -6.27 16 25 C 0.14 2.94 2.82 -3.93 -0.01 2.93 16 26 C -0.09 -1.47 0.56 -154.61 -0.09 -1.56 16 27 C -0.14 -1.96 8.31 37.16 0.31 -1.65 16 28 C -0.13 -2.07 7.82 37.16 0.29 -1.78 16 29 C 0.00 0.03 9.39 -38.87 -0.37 -0.33 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.06 0.29 8.09 -51.93 -0.42 -0.13 16 34 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 35 H 0.16 0.95 8.06 -52.48 -0.42 0.53 16 36 H 0.16 1.27 6.42 -52.48 -0.34 0.94 16 37 H 0.40 4.19 4.73 -40.82 -0.19 4.00 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.16 6.34 -51.93 -0.33 0.83 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.08 1.75 4.63 -51.93 -0.24 1.51 16 44 H 0.03 0.57 6.93 -51.93 -0.36 0.21 16 45 H 0.05 0.59 7.36 -51.94 -0.38 0.21 16 46 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 47 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.08 1.40 5.97 -51.93 -0.31 1.09 16 49 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 50 H 0.03 0.42 6.58 -51.93 -0.34 0.08 16 51 H 0.15 1.55 7.74 -52.49 -0.41 1.14 16 LS Contribution 395.50 15.07 5.96 5.96 Total: -1.00 -33.00 395.50 -7.12 -40.12 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.97 Total: 2.62 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -0.71 Total: 1.44 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.03 Total: -55.27 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.29 Total: -12.76 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.14 Total: 17.90 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.00 -7.12 -40.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940807059.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.887 kcal (2) G-P(sol) polarization free energy of solvation -33.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds