Wall clock time and date at job start Wed Apr 1 2020 05:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00480 * 2 1 4 4 C 1.50696 * 109.47443 * 179.97438 * 3 2 1 5 5 C 1.38350 * 120.34761 * 269.97867 * 4 3 2 6 6 N 1.31932 * 121.08087 * 180.02562 * 5 4 3 7 7 C 1.31689 * 121.87667 * 359.76221 * 6 5 4 8 8 C 1.39521 * 120.56867 * 0.50014 * 7 6 5 9 9 C 1.47840 * 120.56024 * 179.77001 * 8 7 6 10 10 O 1.21559 * 120.00013 * 179.72546 * 9 8 7 11 11 N 1.34772 * 120.00216 * 359.71928 * 9 8 7 12 12 C 1.46496 * 120.00284 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.46022 * 34.98010 * 12 11 9 14 14 C 1.53042 * 109.46338 * 275.00358 * 12 11 9 15 15 C 1.53187 * 109.31387 * 178.61305 * 14 12 11 16 16 N 1.46923 * 108.77603 * 54.63563 * 15 14 12 17 17 C 1.36944 * 120.63179 * 126.37051 * 16 15 14 18 18 H 1.08006 * 119.99668 * 331.59560 * 17 16 15 19 19 C 1.38807 * 120.00333 * 151.60135 * 17 16 15 20 20 N 1.31617 * 120.00050 * 160.73351 * 19 17 16 21 21 Si 1.86804 * 119.99858 * 340.73940 * 19 17 16 22 22 H 1.48495 * 109.47308 * 95.16163 * 21 19 17 23 23 H 1.48498 * 109.46832 * 215.16270 * 21 19 17 24 24 H 1.48500 * 109.46907 * 335.16135 * 21 19 17 25 25 C 1.46926 * 118.74241 * 306.64172 * 16 15 14 26 26 C 1.52760 * 109.00434 * 53.30762 * 25 16 15 27 27 C 1.53004 * 109.56806 * 185.55696 * 26 25 16 28 28 C 1.53000 * 109.36056 * 65.50252 * 26 25 16 29 29 C 1.38358 * 120.35061 * 90.00040 * 4 3 2 30 30 H 1.08995 * 109.47533 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46785 * 300.00546 * 1 2 3 32 32 H 1.09000 * 109.46638 * 59.99903 * 1 2 3 33 33 H 1.08998 * 109.47384 * 59.99613 * 3 2 1 34 34 H 1.09007 * 109.47167 * 300.00123 * 3 2 1 35 35 H 1.08006 * 119.46196 * 0.02562 * 5 4 3 36 36 H 1.08005 * 119.72005 * 180.24637 * 7 6 5 37 37 H 0.97000 * 120.00158 * 0.02562 * 11 9 8 38 38 H 1.09003 * 109.49481 * 58.66143 * 14 12 11 39 39 H 1.09004 * 109.52173 * 298.58261 * 14 12 11 40 40 H 1.09003 * 109.58966 * 294.85073 * 15 14 12 41 41 H 1.09003 * 109.70567 * 174.49212 * 15 14 12 42 42 H 0.97004 * 119.99787 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.58939 * 173.14384 * 25 16 15 44 44 H 1.09007 * 109.58531 * 293.57508 * 25 16 15 45 45 H 1.08989 * 109.47870 * 179.97438 * 27 26 25 46 46 H 1.09007 * 109.46654 * 299.96941 * 27 26 25 47 47 H 1.09001 * 109.46763 * 59.95866 * 27 26 25 48 48 H 1.09001 * 109.46895 * 300.15902 * 28 26 25 49 49 H 1.09003 * 109.47218 * 60.15877 * 28 26 25 50 50 H 1.08999 * 109.47090 * 180.15937 * 28 26 25 51 51 H 1.08001 * 120.85221 * 359.95434 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.2090 1.1318 1.1949 6 7 5.5241 1.0281 1.2123 7 6 6.2317 0.9673 0.1033 8 6 5.6050 1.0217 -1.1421 9 6 6.4000 0.9586 -2.3869 10 8 5.8431 1.0018 -3.4666 11 7 7.7422 0.8532 -2.3248 12 6 8.5299 0.7900 -3.5584 13 1 8.0644 1.4168 -4.3190 14 6 8.5858 -0.6568 -4.0542 15 6 9.3809 -0.7136 -5.3624 16 7 10.6975 -0.0997 -5.1427 17 6 11.8449 -0.7795 -5.4534 18 1 11.8594 -1.8589 -5.4185 19 6 12.9894 -0.0814 -5.8133 20 7 14.1663 -0.6667 -5.7440 21 14 12.8594 1.6887 -6.3957 22 1 13.0929 2.6050 -5.2507 23 1 13.8779 1.9401 -7.4466 24 1 11.5038 1.9281 -6.9528 25 6 10.7599 1.2550 -4.5775 26 6 9.9493 1.2920 -3.2833 27 6 9.8901 2.7273 -2.7565 28 6 10.6162 0.3920 -2.2412 29 6 4.2100 1.1309 -1.1930 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5139 -0.8900 33 1 1.6887 1.8464 0.8899 34 1 1.6887 1.8464 -0.8900 35 1 3.6671 1.1748 2.1282 36 1 7.3067 0.8787 0.1582 37 1 8.1866 0.8184 -1.4633 38 1 7.5733 -1.0213 -4.2276 39 1 9.0735 -1.2801 -3.3046 40 1 8.8470 -0.1653 -6.1386 41 1 9.5084 -1.7515 -5.6701 42 1 14.9661 -0.1789 -5.9958 43 1 11.7969 1.5150 -4.3651 44 1 10.3407 1.9672 -5.2884 45 1 9.3111 2.7521 -1.8335 46 1 10.9012 3.0844 -2.5607 47 1 9.4162 3.3680 -3.5002 48 1 10.6591 -0.6300 -2.6179 49 1 11.6270 0.7499 -2.0455 50 1 10.0375 0.4148 -1.3177 51 1 3.6917 1.1711 -2.1397 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940807059.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:00 Heat of formation + Delta-G solvation = -41.770572 kcal Electronic energy + Delta-G solvation = -31274.728400 eV Core-core repulsion = 27174.070312 eV Total energy + Delta-G solvation = -4100.658088 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.95895 -41.00162 -39.55196 -38.67559 -36.44432 -34.62117 -34.03716 -33.97825 -33.16910 -31.59573 -28.45506 -28.22161 -27.76479 -27.15934 -26.49990 -25.40821 -24.06230 -23.67111 -22.20614 -21.49632 -20.15939 -19.25487 -18.49814 -18.09874 -17.59118 -17.38385 -17.20538 -16.68776 -16.47206 -16.19500 -16.11572 -16.05901 -15.53291 -15.24561 -15.12984 -14.90486 -14.66124 -14.41636 -14.23159 -14.17671 -13.95456 -13.73839 -13.34572 -13.21076 -13.02354 -12.93114 -12.85764 -12.64850 -12.42344 -12.37079 -12.28657 -12.09454 -11.84717 -11.54697 -11.44611 -11.41063 -11.15802 -10.99721 -10.74204 -10.69429 -10.49248 -10.30770 -10.02388 -8.91221 -8.14578 -5.47584 -0.47369 0.01346 1.28587 1.41657 1.49536 1.73501 1.98933 2.41693 2.59589 3.05282 3.06738 3.24009 3.32582 3.58260 3.61019 3.70846 3.75030 3.84189 3.86931 3.93923 4.01623 4.25884 4.28538 4.31862 4.46142 4.50054 4.53948 4.55938 4.57002 4.62757 4.66276 4.74685 4.82206 4.85003 4.89890 4.90611 4.93553 5.00631 5.03773 5.06038 5.10090 5.19541 5.31426 5.33979 5.40961 5.45858 5.63370 5.89223 6.14795 6.17135 6.44229 6.73148 6.92078 7.10162 7.62669 8.03895 9.05115 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024330 B = 0.002318 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.582041 B =12077.828598 C =12439.085271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.106 3.894 4 C -0.152 4.152 5 C 0.144 3.856 6 N -0.501 5.501 7 C 0.143 3.857 8 C -0.197 4.197 9 C 0.564 3.436 10 O -0.573 6.573 11 N -0.700 5.700 12 C 0.175 3.825 13 H 0.070 0.930 14 C -0.133 4.133 15 C 0.147 3.853 16 N -0.613 5.613 17 C -0.239 4.239 18 H 0.054 0.946 19 C -0.030 4.030 20 N -0.955 5.955 21 Si 0.937 3.063 22 H -0.273 1.273 23 H -0.314 1.314 24 H -0.264 1.264 25 C 0.136 3.864 26 C -0.082 4.082 27 C -0.137 4.137 28 C -0.128 4.128 29 C -0.007 4.007 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.190 0.810 36 H 0.180 0.820 37 H 0.410 0.590 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.027 0.973 41 H 0.060 0.940 42 H 0.260 0.740 43 H 0.056 0.944 44 H 0.025 0.975 45 H 0.079 0.921 46 H 0.059 0.941 47 H 0.052 0.948 48 H 0.050 0.950 49 H 0.045 0.955 50 H 0.075 0.925 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.097 7.641 17.609 32.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.030 3.970 4 C -0.154 4.154 5 C -0.013 4.013 6 N -0.209 5.209 7 C -0.015 4.015 8 C -0.202 4.202 9 C 0.352 3.648 10 O -0.453 6.453 11 N -0.351 5.351 12 C 0.070 3.930 13 H 0.088 0.912 14 C -0.173 4.173 15 C 0.021 3.979 16 N -0.337 5.337 17 C -0.368 4.368 18 H 0.071 0.929 19 C -0.225 4.225 20 N -0.601 5.601 21 Si 0.767 3.233 22 H -0.199 1.199 23 H -0.243 1.243 24 H -0.188 1.188 25 C 0.010 3.990 26 C -0.085 4.085 27 C -0.195 4.195 28 C -0.185 4.185 29 C -0.033 4.033 30 H 0.110 0.890 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.207 0.793 36 H 0.197 0.803 37 H 0.249 0.751 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.045 0.955 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.043 0.957 45 H 0.098 0.902 46 H 0.078 0.922 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.065 0.935 50 H 0.094 0.906 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -25.776 7.476 17.614 32.102 hybrid contribution 0.308 0.659 -1.457 1.629 sum -25.468 8.135 16.156 31.238 Atomic orbital electron populations 1.22949 0.78989 1.03820 1.01316 1.87931 1.21761 1.28056 1.95714 1.21351 0.87083 0.85270 1.03334 1.20783 0.97161 1.03898 0.93527 1.23421 0.89627 0.89532 0.98681 1.67851 1.08685 1.13559 1.30787 1.23323 1.01337 0.90634 0.86178 1.20905 0.95243 1.09583 0.94444 1.18280 0.82383 0.75726 0.88448 1.90772 1.71612 1.51827 1.31094 1.45938 1.05576 1.73305 1.10321 1.20670 0.89969 0.96384 0.85965 0.91205 1.22286 0.99681 0.96707 0.98633 1.21003 0.84636 0.97410 0.94810 1.44413 1.01929 1.14925 1.72409 1.18793 0.88041 0.91200 1.38798 0.92868 1.25841 0.95096 1.01394 1.00194 1.69941 0.98049 1.39365 1.52769 0.86035 0.76990 0.82334 0.77950 1.19938 1.24274 1.18810 1.21347 0.98452 0.86244 0.92932 1.21152 0.93578 0.97029 0.96698 1.21829 1.02434 0.93660 1.01585 1.21745 0.99850 0.99600 0.97285 1.21751 0.92506 0.89526 0.99558 0.89019 0.92151 0.93157 0.89033 0.91115 0.79306 0.80283 0.75088 0.91736 0.91039 0.95486 0.92177 0.93047 0.92618 0.95692 0.90199 0.92192 0.92871 0.93138 0.93542 0.90591 0.84025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.45 16 2 O -0.41 -6.24 10.69 -148.98 -1.59 -7.83 16 3 C 0.11 1.15 6.08 71.23 0.43 1.59 16 4 C -0.15 -2.31 5.52 -19.81 -0.11 -2.42 16 5 C 0.14 2.06 10.85 84.70 0.92 2.98 16 6 N -0.50 -8.90 10.35 -194.75 -2.01 -10.91 16 7 C 0.14 2.48 10.71 85.02 0.91 3.39 16 8 C -0.20 -4.09 5.89 -19.99 -0.12 -4.21 16 9 C 0.56 14.59 7.75 86.79 0.67 15.27 16 10 O -0.57 -19.25 16.08 -3.90 -0.06 -19.31 16 11 N -0.70 -16.23 4.24 -445.28 -1.89 -18.12 16 12 C 0.17 5.18 1.57 45.02 0.07 5.26 16 13 H 0.07 2.35 7.57 -2.39 -0.02 2.33 16 14 C -0.13 -4.34 5.31 30.67 0.16 -4.18 16 15 C 0.15 5.79 6.52 86.36 0.56 6.35 16 16 N -0.61 -28.16 2.20 -699.93 -1.54 -29.70 16 17 C -0.24 -13.26 10.03 84.03 0.84 -12.42 16 18 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16 19 C -0.03 -1.76 5.25 84.86 0.45 -1.31 16 20 N -0.95 -59.39 13.97 21.65 0.30 -59.09 16 21 Si 0.94 46.34 24.36 68.60 1.67 48.01 16 22 H -0.27 -12.63 6.74 99.48 0.67 -11.96 16 23 H -0.31 -15.91 7.11 99.48 0.71 -15.20 16 24 H -0.26 -12.64 6.41 99.48 0.64 -12.01 16 25 C 0.14 5.56 2.82 86.22 0.24 5.81 16 26 C -0.08 -2.53 0.56 -52.24 -0.03 -2.56 16 27 C -0.14 -3.41 8.31 71.98 0.60 -2.81 16 28 C -0.13 -3.78 7.82 71.98 0.56 -3.22 16 29 C -0.01 -0.14 9.39 22.73 0.21 0.08 16 30 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.09 0.49 8.09 -2.39 -0.02 0.47 16 34 H 0.07 0.66 8.09 -2.38 -0.02 0.64 16 35 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 36 H 0.18 2.18 6.42 -2.91 -0.02 2.16 16 37 H 0.41 7.16 4.73 -92.71 -0.44 6.72 16 38 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.07 2.32 6.34 -2.38 -0.02 2.30 16 40 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.06 2.40 7.93 -2.39 -0.02 2.39 16 42 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 43 H 0.06 2.52 4.63 -2.39 -0.01 2.51 16 44 H 0.03 1.04 6.93 -2.38 -0.02 1.02 16 45 H 0.08 1.52 7.36 -2.39 -0.02 1.51 16 46 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 47 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.05 1.78 5.97 -2.39 -0.01 1.76 16 49 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 50 H 0.08 1.59 6.58 -2.39 -0.02 1.57 16 51 H 0.14 2.90 7.74 -2.91 -0.02 2.87 16 Total: -1.00 -73.79 395.50 2.90 -70.89 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.40 Total: 17.02 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 7.63 Total: 9.05 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -5.14 Total: -117.82 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -1.65 Total: -27.14 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.67 Total: 48.01 kcal Total: -73.79 2.90 -70.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940807059.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.116 kcal (2) G-P(sol) polarization free energy of solvation -73.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds