Wall clock time and date at job start Wed Apr 1 2020 04:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34872 * 119.10236 * 2 1 4 4 C 1.41656 * 119.34334 * 180.02562 * 3 2 1 5 5 O 1.22087 * 121.07027 * 179.97438 * 4 3 2 6 6 C 1.47097 * 117.86693 * 0.02562 * 4 3 2 7 7 C 1.47284 * 120.88538 * 180.02562 * 6 4 3 8 8 O 1.21624 * 120.00356 * 359.97438 * 7 6 4 9 9 N 1.34774 * 120.00174 * 180.02562 * 7 6 4 10 10 C 1.46503 * 120.00085 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.46154 * 34.97319 * 10 9 7 12 12 C 1.53039 * 109.46079 * 274.99773 * 10 9 7 13 13 C 1.53193 * 109.31608 * 178.61760 * 12 10 9 14 14 N 1.46924 * 108.77532 * 54.63097 * 13 12 10 15 15 C 1.36939 * 120.62631 * 126.37210 * 14 13 12 16 16 H 1.07993 * 120.00282 * 329.85623 * 15 14 13 17 17 C 1.38813 * 119.99724 * 149.85896 * 15 14 13 18 18 N 1.31615 * 120.00309 * 335.71330 * 17 15 14 19 19 Si 1.86805 * 120.00050 * 155.71328 * 17 15 14 20 20 H 1.48503 * 109.47093 * 89.99863 * 19 17 15 21 21 H 1.48494 * 109.46965 * 210.00232 * 19 17 15 22 22 H 1.48504 * 109.46795 * 329.99828 * 19 17 15 23 23 C 1.46923 * 118.74222 * 306.64988 * 14 13 12 24 24 C 1.52758 * 109.01084 * 53.30267 * 23 14 13 25 25 C 1.53001 * 109.56830 * 185.55473 * 24 23 14 26 26 C 1.53003 * 109.38257 * 65.51823 * 24 23 14 27 27 C 1.37995 * 118.23229 * 0.27067 * 6 4 3 28 28 N 1.34344 * 120.36940 * 359.46660 * 27 6 4 29 29 C 1.46501 * 118.80320 * 180.26405 * 28 27 6 30 30 H 1.09002 * 109.47100 * 95.59862 * 1 2 3 31 31 H 1.08998 * 109.47063 * 215.59448 * 1 2 3 32 32 H 1.08993 * 109.47195 * 335.59395 * 1 2 3 33 33 H 1.08008 * 120.32609 * 359.97438 * 3 2 1 34 34 H 0.97004 * 120.00309 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.49892 * 58.65961 * 12 10 9 36 36 H 1.09004 * 109.52454 * 298.58085 * 12 10 9 37 37 H 1.09001 * 109.57937 * 294.84738 * 13 12 10 38 38 H 1.08998 * 109.59076 * 174.42313 * 13 12 10 39 39 H 0.97001 * 120.00151 * 354.22433 * 18 17 15 40 40 H 1.08998 * 109.58967 * 173.14588 * 23 14 13 41 41 H 1.09010 * 109.58302 * 293.56788 * 23 14 13 42 42 H 1.08999 * 109.46868 * 179.97438 * 25 24 23 43 43 H 1.09006 * 109.47001 * 299.97284 * 25 24 23 44 44 H 1.08998 * 109.46932 * 59.96799 * 25 24 23 45 45 H 1.08996 * 109.47543 * 300.14604 * 26 24 23 46 46 H 1.09008 * 109.47111 * 60.14443 * 26 24 23 47 47 H 1.09002 * 109.47423 * 180.14399 * 26 24 23 48 48 H 1.07993 * 119.81079 * 179.70439 * 27 6 4 49 49 H 1.09004 * 109.47218 * 266.09897 * 29 28 27 50 50 H 1.08997 * 109.47198 * 26.09783 * 29 28 27 51 51 H 1.09000 * 109.47324 * 146.09898 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5795 1.1844 -0.0006 5 8 4.2052 2.2328 -0.0010 6 6 4.2725 -0.1131 -0.0017 7 6 5.7436 -0.1845 -0.0017 8 8 6.4021 0.8381 -0.0013 9 7 6.3602 -1.3829 -0.0033 10 6 7.8235 -1.4539 -0.0039 11 1 8.2272 -0.6310 0.5859 12 6 8.3383 -1.3514 -1.4415 13 6 9.8697 -1.3912 -1.4354 14 7 10.3085 -2.5983 -0.7218 15 6 11.1744 -3.4807 -1.3107 16 1 11.1743 -3.6028 -2.3837 17 6 12.0522 -4.2184 -0.5283 18 7 12.4095 -3.7737 0.6578 19 14 12.7266 -5.8424 -1.1588 20 1 13.9874 -5.5986 -1.9047 21 1 12.9968 -6.7451 -0.0112 22 1 11.7314 -6.4742 -2.0620 23 6 9.7959 -2.8437 0.6330 24 6 8.2697 -2.7847 0.6059 25 6 7.7269 -2.9007 2.0317 26 6 7.7319 -3.9401 -0.2408 27 6 3.5077 -1.2617 -0.0079 28 7 2.1665 -1.1846 -0.0019 29 6 1.3881 -2.4258 -0.0029 30 1 -0.3633 -0.1003 -1.0228 31 1 -0.3633 -0.8356 0.5981 32 1 -0.3633 0.9358 0.4246 33 1 1.6136 2.1084 -0.0004 34 1 5.8351 -2.1985 -0.0040 35 1 8.0005 -0.4138 -1.8830 36 1 7.9551 -2.1877 -2.0262 37 1 10.2561 -0.5066 -0.9290 38 1 10.2387 -1.4183 -2.4606 39 1 12.1272 -2.8932 0.9509 40 1 10.1162 -3.8288 0.9721 41 1 10.1762 -2.0799 1.3115 42 1 6.6380 -2.8579 2.0104 43 1 8.0450 -3.8487 2.4656 44 1 8.1112 -2.0780 2.6347 45 1 8.1197 -3.8579 -1.2561 46 1 8.0499 -4.8879 0.1939 47 1 6.6429 -3.8980 -0.2633 48 1 3.9900 -2.2279 -0.0137 49 1 1.1315 -2.6929 -1.0281 50 1 1.9788 -3.2254 0.4439 51 1 0.4749 -2.2824 0.5746 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940821712.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:47 Heat of formation + Delta-G solvation = -12.655441 kcal Electronic energy + Delta-G solvation = -31957.802118 eV Core-core repulsion = 27858.406556 eV Total energy + Delta-G solvation = -4099.395561 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.50886 -39.84939 -38.35959 -37.52029 -34.69515 -33.90204 -33.13700 -32.57162 -31.92503 -29.45233 -28.30334 -27.28460 -26.86789 -26.07702 -24.97324 -24.29503 -22.50628 -21.62939 -20.71513 -20.39648 -18.79656 -17.93192 -17.64010 -17.22949 -16.48221 -16.42506 -15.98662 -15.44742 -14.71639 -14.67446 -14.50434 -14.15579 -13.99555 -13.94351 -13.73498 -13.63464 -13.51811 -13.43651 -13.30953 -13.18130 -12.82545 -12.58887 -12.40960 -12.33634 -12.22772 -11.87151 -11.55441 -11.45562 -10.90460 -10.88494 -10.68111 -10.38287 -10.29720 -10.05726 -10.01740 -9.85598 -9.79379 -9.73027 -9.28637 -9.11909 -8.62735 -8.33146 -8.15918 -6.81847 -6.03048 -3.21794 0.62582 1.03650 1.98559 3.06769 3.35664 3.50492 3.53167 3.68489 3.68645 3.82649 4.01458 4.15026 4.34354 4.43452 4.60827 4.66766 4.75546 4.80143 4.85088 5.04691 5.16753 5.18087 5.21599 5.36040 5.42072 5.48390 5.49531 5.56261 5.83051 5.85859 5.97714 6.00868 6.10790 6.17328 6.22955 6.24910 6.34306 6.42543 6.45565 6.47868 6.57360 6.62829 6.80031 6.84592 6.90231 6.97796 7.11136 7.18551 7.80365 8.06434 8.06664 8.59245 8.61835 9.15879 9.88017 10.34546 11.24726 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020628 B = 0.002617 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.080976 B =10695.294628 C =11366.023795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.153 3.847 3 C -0.269 4.269 4 C 0.406 3.594 5 O -0.477 6.477 6 C -0.291 4.291 7 C 0.567 3.433 8 O -0.511 6.511 9 N -0.726 5.726 10 C 0.167 3.833 11 H 0.081 0.919 12 C -0.143 4.143 13 C 0.149 3.851 14 N -0.596 5.596 15 C -0.346 4.346 16 H 0.054 0.946 17 C -0.023 4.023 18 N -0.916 5.916 19 Si 1.064 2.936 20 H -0.294 1.294 21 H -0.287 1.287 22 H -0.293 1.293 23 C 0.168 3.832 24 C -0.092 4.092 25 C -0.135 4.135 26 C -0.126 4.126 27 C 0.168 3.832 28 N -0.472 5.472 29 C 0.048 3.952 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.152 0.848 34 H 0.386 0.614 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.019 0.981 38 H 0.057 0.943 39 H 0.270 0.730 40 H 0.081 0.919 41 H 0.018 0.982 42 H 0.043 0.957 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.072 0.928 46 H 0.053 0.947 47 H 0.028 0.972 48 H 0.165 0.835 49 H 0.082 0.918 50 H 0.093 0.907 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.541 -1.490 0.142 29.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.048 3.952 3 C -0.293 4.293 4 C 0.291 3.709 5 O -0.358 6.358 6 C -0.302 4.302 7 C 0.354 3.646 8 O -0.385 6.385 9 N -0.378 5.378 10 C 0.063 3.937 11 H 0.099 0.901 12 C -0.183 4.183 13 C 0.022 3.978 14 N -0.319 5.319 15 C -0.475 4.475 16 H 0.071 0.929 17 C -0.225 4.225 18 N -0.556 5.556 19 Si 0.894 3.106 20 H -0.222 1.222 21 H -0.213 1.213 22 H -0.220 1.220 23 C 0.041 3.959 24 C -0.094 4.094 25 C -0.193 4.193 26 C -0.183 4.183 27 C 0.038 3.962 28 N -0.160 5.160 29 C -0.094 4.094 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.169 0.831 34 H 0.221 0.779 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.037 0.963 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.036 0.964 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.072 0.928 47 H 0.047 0.953 48 H 0.182 0.818 49 H 0.101 0.899 50 H 0.112 0.888 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -27.863 -1.648 0.527 27.917 hybrid contribution -1.295 0.736 -0.488 1.568 sum -29.158 -0.912 0.039 29.172 Atomic orbital electron populations 1.21185 0.88092 1.05014 1.04091 1.20255 0.94814 0.84999 0.95164 1.22290 0.96361 0.97175 1.13495 1.18166 0.88218 0.87964 0.76508 1.90834 1.69923 1.33197 1.41841 1.22677 0.94738 0.95033 1.17766 1.17491 0.85905 0.83945 0.77306 1.90858 1.65735 1.33939 1.48005 1.46219 1.08281 1.07104 1.76234 1.20919 0.77483 0.98126 0.97135 0.90060 1.22433 0.99042 1.00886 0.95913 1.20888 0.90665 0.89562 0.96693 1.44084 1.51505 1.21697 1.14592 1.19919 1.14830 1.19679 0.93110 0.92867 1.25831 0.94774 1.04853 0.97060 1.70737 1.42430 1.20547 1.21844 0.83561 0.75634 0.76265 0.75150 1.22199 1.21265 1.21953 1.20870 0.87223 1.00695 0.87138 1.21358 1.00118 0.93656 0.94281 1.21782 0.99439 1.01750 0.96312 1.21745 0.97162 0.97614 1.01805 1.22200 0.82125 0.99921 0.91941 1.42524 1.05254 1.07176 1.61006 1.22554 0.97878 0.84413 1.04522 0.89341 0.90133 0.88881 0.83084 0.77904 0.92540 0.91914 0.96341 0.92470 0.91933 0.90053 0.96435 0.93745 0.92543 0.92917 0.90912 0.92822 0.95305 0.81782 0.89937 0.88807 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.26 9.35 36.00 0.34 0.08 16 2 C 0.15 0.97 6.64 -82.13 -0.55 0.43 16 3 C -0.27 -2.78 9.57 -39.47 -0.38 -3.15 16 4 C 0.41 6.37 6.96 -34.69 -0.24 6.13 16 5 O -0.48 -10.00 16.41 -15.18 -0.25 -10.25 16 6 C -0.29 -4.00 6.05 -102.72 -0.62 -4.62 16 7 C 0.57 9.80 7.74 -12.58 -0.10 9.70 16 8 O -0.51 -11.57 15.24 -14.76 -0.22 -11.80 16 9 N -0.73 -10.68 4.24 -54.88 -0.23 -10.91 16 10 C 0.17 2.99 1.57 -67.89 -0.11 2.88 16 11 H 0.08 1.70 7.57 -51.93 -0.39 1.30 16 12 C -0.14 -2.72 5.31 -26.61 -0.14 -2.86 16 13 C 0.15 3.29 6.52 -3.71 -0.02 3.27 16 14 N -0.60 -14.65 2.26 -172.59 -0.39 -15.04 16 15 C -0.35 -9.47 9.46 -15.06 -0.14 -9.61 16 16 H 0.05 1.47 7.94 -52.49 -0.42 1.06 16 17 C -0.02 -0.64 4.68 -17.43 -0.08 -0.72 16 18 N -0.92 -27.20 12.51 55.49 0.69 -26.50 16 19 Si 1.06 24.93 29.98 -169.99 -5.10 19.84 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 23 C 0.17 3.80 3.36 -3.94 -0.01 3.79 16 24 C -0.09 -1.61 0.56 -154.61 -0.09 -1.70 16 25 C -0.13 -2.04 8.31 37.16 0.31 -1.74 16 26 C -0.13 -2.03 7.82 37.16 0.29 -1.74 16 27 C 0.17 1.35 9.79 -16.54 -0.16 1.19 16 28 N -0.47 -2.58 2.97 -119.75 -0.36 -2.93 16 29 C 0.05 0.04 10.01 59.85 0.60 0.64 16 30 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 31 H 0.08 0.01 5.96 -51.93 -0.31 -0.30 16 32 H 0.09 0.16 7.98 -51.93 -0.41 -0.26 16 33 H 0.15 1.34 8.01 -52.48 -0.42 0.92 16 34 H 0.39 4.32 4.74 -40.82 -0.19 4.13 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.15 6.34 -51.93 -0.33 0.83 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 39 H 0.27 8.15 6.78 -40.82 -0.28 7.87 16 40 H 0.08 2.05 6.48 -51.93 -0.34 1.71 16 41 H 0.02 0.43 7.86 -51.92 -0.41 0.02 16 42 H 0.04 0.56 7.36 -51.93 -0.38 0.17 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.07 1.35 5.98 -51.93 -0.31 1.04 16 46 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 47 H 0.03 0.35 6.58 -51.93 -0.34 0.01 16 48 H 0.17 0.80 6.31 -52.49 -0.33 0.47 16 49 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 50 H 0.09 -0.03 7.89 -51.93 -0.41 -0.44 16 51 H 0.09 -0.08 5.85 -51.93 -0.30 -0.38 16 LS Contribution 393.18 15.07 5.93 5.93 Total: -1.00 -39.61 393.18 -8.78 -48.39 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -7.74 Total: 1.32 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -1.11 Total: 1.96 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.28 Total: -55.39 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.47 Total: -22.05 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.10 Total: 19.84 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -39.61 -8.78 -48.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940821712.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.735 kcal (2) G-P(sol) polarization free energy of solvation -39.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds