Wall clock time and date at job start Wed Apr 1 2020 04:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34872 * 119.10236 * 2 1 4 4 C 1.41656 * 119.34334 * 180.02562 * 3 2 1 5 5 O 1.22087 * 121.07027 * 179.97438 * 4 3 2 6 6 C 1.47097 * 117.86693 * 0.02562 * 4 3 2 7 7 C 1.47284 * 120.88538 * 180.02562 * 6 4 3 8 8 O 1.21624 * 120.00356 * 359.97438 * 7 6 4 9 9 N 1.34774 * 120.00174 * 180.02562 * 7 6 4 10 10 C 1.46503 * 120.00085 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.46154 * 34.97319 * 10 9 7 12 12 C 1.53039 * 109.46079 * 274.99773 * 10 9 7 13 13 C 1.53193 * 109.31608 * 178.61760 * 12 10 9 14 14 N 1.46924 * 108.77532 * 54.63097 * 13 12 10 15 15 C 1.36939 * 120.62631 * 126.37210 * 14 13 12 16 16 H 1.07993 * 120.00282 * 329.85623 * 15 14 13 17 17 C 1.38813 * 119.99724 * 149.85896 * 15 14 13 18 18 N 1.31615 * 120.00309 * 335.71330 * 17 15 14 19 19 Si 1.86805 * 120.00050 * 155.71328 * 17 15 14 20 20 H 1.48503 * 109.47093 * 89.99863 * 19 17 15 21 21 H 1.48494 * 109.46965 * 210.00232 * 19 17 15 22 22 H 1.48504 * 109.46795 * 329.99828 * 19 17 15 23 23 C 1.46923 * 118.74222 * 306.64988 * 14 13 12 24 24 C 1.52758 * 109.01084 * 53.30267 * 23 14 13 25 25 C 1.53001 * 109.56830 * 185.55473 * 24 23 14 26 26 C 1.53003 * 109.38257 * 65.51823 * 24 23 14 27 27 C 1.37995 * 118.23229 * 0.27067 * 6 4 3 28 28 N 1.34344 * 120.36940 * 359.46660 * 27 6 4 29 29 C 1.46501 * 118.80320 * 180.26405 * 28 27 6 30 30 H 1.09002 * 109.47100 * 95.59862 * 1 2 3 31 31 H 1.08998 * 109.47063 * 215.59448 * 1 2 3 32 32 H 1.08993 * 109.47195 * 335.59395 * 1 2 3 33 33 H 1.08008 * 120.32609 * 359.97438 * 3 2 1 34 34 H 0.97004 * 120.00309 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.49892 * 58.65961 * 12 10 9 36 36 H 1.09004 * 109.52454 * 298.58085 * 12 10 9 37 37 H 1.09001 * 109.57937 * 294.84738 * 13 12 10 38 38 H 1.08998 * 109.59076 * 174.42313 * 13 12 10 39 39 H 0.97001 * 120.00151 * 354.22433 * 18 17 15 40 40 H 1.08998 * 109.58967 * 173.14588 * 23 14 13 41 41 H 1.09010 * 109.58302 * 293.56788 * 23 14 13 42 42 H 1.08999 * 109.46868 * 179.97438 * 25 24 23 43 43 H 1.09006 * 109.47001 * 299.97284 * 25 24 23 44 44 H 1.08998 * 109.46932 * 59.96799 * 25 24 23 45 45 H 1.08996 * 109.47543 * 300.14604 * 26 24 23 46 46 H 1.09008 * 109.47111 * 60.14443 * 26 24 23 47 47 H 1.09002 * 109.47423 * 180.14399 * 26 24 23 48 48 H 1.07993 * 119.81079 * 179.70439 * 27 6 4 49 49 H 1.09004 * 109.47218 * 266.09897 * 29 28 27 50 50 H 1.08997 * 109.47198 * 26.09783 * 29 28 27 51 51 H 1.09000 * 109.47324 * 146.09898 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5795 1.1844 -0.0006 5 8 4.2052 2.2328 -0.0010 6 6 4.2725 -0.1131 -0.0017 7 6 5.7436 -0.1845 -0.0017 8 8 6.4021 0.8381 -0.0013 9 7 6.3602 -1.3829 -0.0033 10 6 7.8235 -1.4539 -0.0039 11 1 8.2272 -0.6310 0.5859 12 6 8.3383 -1.3514 -1.4415 13 6 9.8697 -1.3912 -1.4354 14 7 10.3085 -2.5983 -0.7218 15 6 11.1744 -3.4807 -1.3107 16 1 11.1743 -3.6028 -2.3837 17 6 12.0522 -4.2184 -0.5283 18 7 12.4095 -3.7737 0.6578 19 14 12.7266 -5.8424 -1.1588 20 1 13.9874 -5.5986 -1.9047 21 1 12.9968 -6.7451 -0.0112 22 1 11.7314 -6.4742 -2.0620 23 6 9.7959 -2.8437 0.6330 24 6 8.2697 -2.7847 0.6059 25 6 7.7269 -2.9007 2.0317 26 6 7.7319 -3.9401 -0.2408 27 6 3.5077 -1.2617 -0.0079 28 7 2.1665 -1.1846 -0.0019 29 6 1.3881 -2.4258 -0.0029 30 1 -0.3633 -0.1003 -1.0228 31 1 -0.3633 -0.8356 0.5981 32 1 -0.3633 0.9358 0.4246 33 1 1.6136 2.1084 -0.0004 34 1 5.8351 -2.1985 -0.0040 35 1 8.0005 -0.4138 -1.8830 36 1 7.9551 -2.1877 -2.0262 37 1 10.2561 -0.5066 -0.9290 38 1 10.2387 -1.4183 -2.4606 39 1 12.1272 -2.8932 0.9509 40 1 10.1162 -3.8288 0.9721 41 1 10.1762 -2.0799 1.3115 42 1 6.6380 -2.8579 2.0104 43 1 8.0450 -3.8487 2.4656 44 1 8.1112 -2.0780 2.6347 45 1 8.1197 -3.8579 -1.2561 46 1 8.0499 -4.8879 0.1939 47 1 6.6429 -3.8980 -0.2633 48 1 3.9900 -2.2279 -0.0137 49 1 1.1315 -2.6929 -1.0281 50 1 1.9788 -3.2254 0.4439 51 1 0.4749 -2.2824 0.5746 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940821712.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:46 Heat of formation + Delta-G solvation = -40.122568 kcal Electronic energy + Delta-G solvation = -31958.993182 eV Core-core repulsion = 27858.406556 eV Total energy + Delta-G solvation = -4100.586625 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.27603 -41.23872 -39.65441 -38.77964 -36.46573 -34.81975 -34.14941 -33.94980 -33.37682 -31.06859 -29.09650 -28.19932 -27.76658 -27.67388 -26.56843 -25.23935 -24.08975 -22.63545 -22.44448 -21.62520 -20.01800 -19.47036 -18.90567 -18.45382 -17.27394 -17.00935 -16.92175 -16.86956 -16.31312 -15.94236 -15.87314 -15.54729 -15.44484 -15.25463 -15.06736 -14.78233 -14.66533 -14.26346 -14.17434 -14.00362 -13.85135 -13.82405 -13.62455 -13.32726 -13.00729 -12.89932 -12.66819 -12.66081 -12.53656 -12.49759 -12.45619 -12.14793 -11.86846 -11.78676 -11.68770 -11.39495 -11.23379 -11.06635 -10.50673 -10.45962 -10.32917 -10.03702 -9.06349 -8.91837 -8.22345 -5.41003 -0.21719 0.32086 1.46272 1.60605 1.68043 1.85909 1.90023 2.10421 2.67186 2.78432 3.21029 3.23485 3.48978 3.58657 3.61080 3.64887 3.79057 3.87828 3.99726 4.18813 4.21978 4.25175 4.33237 4.44029 4.47104 4.49971 4.53831 4.71373 4.72358 4.73788 4.77328 4.83091 4.83990 4.87670 4.90279 4.94564 5.01985 5.11610 5.13027 5.16175 5.20501 5.27206 5.32546 5.38051 5.50714 5.65632 5.70799 5.78999 5.88051 6.39503 6.63009 7.05307 7.09556 7.36383 7.78301 8.24299 9.01184 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020628 B = 0.002617 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.080976 B =10695.294628 C =11366.023795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.188 3.812 3 C -0.305 4.305 4 C 0.380 3.620 5 O -0.570 6.570 6 C -0.351 4.351 7 C 0.567 3.433 8 O -0.582 6.582 9 N -0.703 5.703 10 C 0.179 3.821 11 H 0.041 0.959 12 C -0.127 4.127 13 C 0.146 3.854 14 N -0.607 5.607 15 C -0.349 4.349 16 H 0.050 0.950 17 C -0.073 4.073 18 N -0.942 5.942 19 Si 1.117 2.883 20 H -0.289 1.289 21 H -0.289 1.289 22 H -0.270 1.270 23 C 0.175 3.825 24 C -0.080 4.080 25 C -0.131 4.131 26 C -0.120 4.120 27 C 0.222 3.778 28 N -0.454 5.454 29 C 0.030 3.970 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.153 0.847 34 H 0.409 0.591 35 H 0.047 0.953 36 H 0.081 0.919 37 H -0.004 1.004 38 H 0.054 0.946 39 H 0.251 0.749 40 H 0.056 0.944 41 H -0.014 1.014 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.034 0.966 45 H 0.048 0.952 46 H 0.051 0.949 47 H 0.081 0.919 48 H 0.212 0.788 49 H 0.105 0.895 50 H 0.119 0.881 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.096 -6.406 -0.455 35.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.080 3.920 3 C -0.328 4.328 4 C 0.273 3.727 5 O -0.459 6.459 6 C -0.361 4.361 7 C 0.356 3.644 8 O -0.461 6.461 9 N -0.357 5.357 10 C 0.073 3.927 11 H 0.060 0.940 12 C -0.167 4.167 13 C 0.019 3.981 14 N -0.331 5.331 15 C -0.478 4.478 16 H 0.068 0.932 17 C -0.270 4.270 18 N -0.584 5.584 19 Si 0.941 3.059 20 H -0.216 1.216 21 H -0.215 1.215 22 H -0.195 1.195 23 C 0.049 3.951 24 C -0.082 4.082 25 C -0.188 4.188 26 C -0.178 4.178 27 C 0.087 3.913 28 N -0.137 5.137 29 C -0.108 4.108 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.115 0.885 33 H 0.171 0.829 34 H 0.248 0.752 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.014 0.986 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.003 0.997 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.053 0.947 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.100 0.900 48 H 0.228 0.772 49 H 0.124 0.876 50 H 0.137 0.863 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -33.545 -6.644 -0.081 34.196 hybrid contribution 0.233 2.166 -0.321 2.202 sum -33.312 -4.478 -0.402 33.614 Atomic orbital electron populations 1.21411 0.83862 1.06855 1.06108 1.20837 0.97059 0.83899 0.90167 1.22134 0.93932 0.99545 1.17187 1.19005 0.90450 0.87875 0.75350 1.90778 1.71798 1.35724 1.47618 1.22156 0.92899 0.96473 1.24597 1.18063 0.87473 0.83227 0.75614 1.90823 1.67547 1.36398 1.51354 1.45780 1.06587 1.07598 1.75715 1.20503 0.79548 0.97014 0.95593 0.94021 1.22222 0.96293 1.01068 0.97080 1.20932 0.93134 0.88056 0.95934 1.44274 1.51627 1.22058 1.15154 1.20167 1.14929 1.19564 0.93183 0.93213 1.27260 0.95094 1.07825 0.96789 1.70877 1.44345 1.19864 1.23300 0.82859 0.75736 0.72378 0.74916 1.21559 1.21490 1.19452 1.20734 0.90990 0.97996 0.85404 1.21161 0.96129 0.94246 0.96713 1.21760 1.01699 1.01471 0.93899 1.21692 1.00345 0.96153 0.99573 1.22628 0.82996 0.99448 0.86196 1.43203 1.04909 1.09053 1.56561 1.23166 0.98650 0.82063 1.06932 0.87123 0.86698 0.88471 0.82915 0.75213 0.93407 0.90091 0.98580 0.92701 0.93960 0.92528 0.99652 0.89828 0.91799 0.94660 0.93267 0.92969 0.90015 0.77191 0.87640 0.86295 0.86021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.25 9.35 71.23 0.67 0.91 16 2 C 0.19 1.59 6.64 41.21 0.27 1.87 16 3 C -0.30 -6.24 9.57 22.34 0.21 -6.03 16 4 C 0.38 12.82 6.96 25.44 0.18 12.99 16 5 O -0.57 -27.06 16.41 13.54 0.22 -26.83 16 6 C -0.35 -9.53 6.05 -18.63 -0.11 -9.64 16 7 C 0.57 20.23 7.74 86.62 0.67 20.90 16 8 O -0.58 -28.93 15.24 15.03 0.23 -28.70 16 9 N -0.70 -19.73 4.24 -445.80 -1.89 -21.63 16 10 C 0.18 6.53 1.57 45.02 0.07 6.61 16 11 H 0.04 1.88 7.57 -2.39 -0.02 1.86 16 12 C -0.13 -4.97 5.31 30.67 0.16 -4.80 16 13 C 0.15 6.84 6.52 86.36 0.56 7.40 16 14 N -0.61 -31.17 2.26 -699.94 -1.58 -32.75 16 15 C -0.35 -19.51 9.46 84.03 0.80 -18.71 16 16 H 0.05 2.79 7.94 -2.91 -0.02 2.76 16 17 C -0.07 -4.17 4.68 84.86 0.40 -3.77 16 18 N -0.94 -58.06 12.51 21.65 0.27 -57.78 16 19 Si 1.12 50.33 29.98 68.60 2.06 52.39 16 20 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 22 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 23 C 0.18 8.32 3.36 86.22 0.29 8.61 16 24 C -0.08 -2.78 0.56 -52.25 -0.03 -2.81 16 25 C -0.13 -3.74 8.31 71.98 0.60 -3.14 16 26 C -0.12 -3.50 7.82 71.98 0.56 -2.93 16 27 C 0.22 2.49 9.79 84.25 0.83 3.31 16 28 N -0.45 -2.17 2.97 -532.77 -1.58 -3.76 16 29 C 0.03 -0.21 10.01 127.77 1.28 1.07 16 30 H 0.11 -0.50 8.14 -2.39 -0.02 -0.52 16 31 H 0.11 -0.91 5.96 -2.39 -0.01 -0.92 16 32 H 0.10 -0.12 7.98 -2.39 -0.02 -0.14 16 33 H 0.15 2.87 8.01 -2.91 -0.02 2.85 16 34 H 0.41 7.20 4.74 -92.71 -0.44 6.76 16 35 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.08 2.89 6.34 -2.38 -0.02 2.88 16 37 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 38 H 0.05 2.54 7.93 -2.39 -0.02 2.52 16 39 H 0.25 16.07 6.78 -92.71 -0.63 15.44 16 40 H 0.06 2.96 6.48 -2.39 -0.02 2.95 16 41 H -0.01 -0.76 7.86 -2.38 -0.02 -0.78 16 42 H 0.08 1.73 7.36 -2.39 -0.02 1.72 16 43 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.05 1.69 5.98 -2.39 -0.01 1.68 16 46 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 47 H 0.08 1.48 6.58 -2.39 -0.02 1.47 16 48 H 0.21 0.38 6.31 -2.91 -0.02 0.36 16 49 H 0.11 -0.97 8.14 -2.39 -0.02 -0.99 16 50 H 0.12 -1.22 7.89 -2.39 -0.02 -1.24 16 51 H 0.12 -1.34 5.85 -2.39 -0.01 -1.35 16 Total: -1.00 -104.21 393.18 5.78 -98.43 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 0.65 Total: 8.80 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 7.40 Total: 11.84 kcal Atomic # 7 Polarization: -111.13 SS G_CDS: -4.79 Total: -115.92 kcal Atomic # 8 Polarization: -55.99 SS G_CDS: 0.45 Total: -55.53 kcal Atomic # 14 Polarization: 50.33 SS G_CDS: 2.06 Total: 52.39 kcal Total: -104.21 5.78 -98.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940821712.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.307 kcal (2) G-P(sol) polarization free energy of solvation -104.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds