Wall clock time and date at job start Wed Apr 1 2020 04:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.41382 * 126.80261 * 2 1 4 4 C 1.35441 * 103.98655 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.77551 * 179.97438 * 4 3 2 6 6 C 1.50695 * 115.56213 * 330.41219 * 5 4 3 7 7 O 1.21278 * 120.00199 * 89.43242 * 6 5 4 8 8 N 1.34777 * 119.99859 * 269.42488 * 6 5 4 9 9 C 1.46496 * 120.00094 * 184.89125 * 8 6 5 10 10 H 1.09003 * 109.46450 * 324.97536 * 9 8 6 11 11 C 1.53040 * 109.45878 * 84.93650 * 9 8 6 12 12 C 1.53194 * 109.31316 * 181.38324 * 11 9 8 13 13 N 1.46921 * 108.77802 * 305.36919 * 12 11 9 14 14 C 1.36945 * 120.62893 * 233.58474 * 13 12 11 15 15 H 1.07999 * 119.99969 * 31.60866 * 14 13 12 16 16 C 1.38812 * 119.99763 * 211.60657 * 14 13 12 17 17 N 1.31621 * 120.00265 * 10.28888 * 16 14 13 18 18 Si 1.86803 * 119.99844 * 190.29595 * 16 14 13 19 19 H 1.48498 * 109.47337 * 89.99372 * 18 16 14 20 20 H 1.48495 * 109.46964 * 209.99885 * 18 16 14 21 21 H 1.48510 * 109.46891 * 329.99644 * 18 16 14 22 22 C 1.46925 * 118.74233 * 53.60281 * 13 12 11 23 23 C 1.53038 * 109.46053 * 205.00410 * 9 8 6 24 24 C 1.52997 * 109.49792 * 298.56596 * 23 9 8 25 25 C 1.52997 * 109.49905 * 58.63366 * 23 9 8 26 26 C 1.53000 * 117.49772 * 184.71757 * 5 4 3 27 27 C 1.53000 * 60.00268 * 252.51170 * 26 5 4 28 28 O 1.34044 * 106.45015 * 0.23853 * 4 3 2 29 29 N 1.20921 * 111.56050 * 359.56992 * 28 4 3 30 30 H 1.08999 * 109.47341 * 90.00162 * 1 2 3 31 31 H 1.08997 * 109.47351 * 209.99680 * 1 2 3 32 32 H 1.08995 * 109.47548 * 330.00243 * 1 2 3 33 33 H 1.08003 * 128.00187 * 359.96455 * 3 2 1 34 34 H 0.97004 * 120.00077 * 4.89973 * 8 6 5 35 35 H 1.09001 * 109.49794 * 301.33590 * 11 9 8 36 36 H 1.09002 * 109.49769 * 61.43641 * 11 9 8 37 37 H 1.08993 * 109.59038 * 185.57365 * 12 11 9 38 38 H 1.09003 * 109.58392 * 65.15186 * 12 11 9 39 39 H 0.96995 * 119.99859 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.58939 * 186.60590 * 22 13 12 41 41 H 1.09002 * 109.69971 * 66.25334 * 22 13 12 42 42 H 1.09003 * 109.47278 * 60.00424 * 24 23 9 43 43 H 1.09007 * 109.46886 * 180.02562 * 24 23 9 44 44 H 1.08997 * 109.47409 * 300.00059 * 24 23 9 45 45 H 1.08999 * 109.47773 * 59.99654 * 25 23 9 46 46 H 1.09004 * 109.47690 * 180.02562 * 25 23 9 47 47 H 1.09002 * 109.47109 * 299.99989 * 25 23 9 48 48 H 1.09001 * 117.50083 * 145.02358 * 26 5 4 49 49 H 1.08997 * 117.50123 * 0.02562 * 26 5 4 50 50 H 1.08998 * 117.49465 * 107.48647 * 27 26 5 51 51 H 1.08997 * 117.50126 * 252.51254 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6068 0.0006 5 6 4.9021 1.3696 0.0003 6 6 4.8646 2.7179 -0.6719 7 8 4.5768 3.7069 -0.0316 8 7 5.1511 2.8246 -1.9845 9 6 5.2198 4.1455 -2.6142 10 1 4.4782 4.8031 -2.1607 11 6 6.6170 4.7357 -2.4098 12 6 6.6747 6.1311 -3.0394 13 7 6.2609 6.0328 -4.4457 14 6 7.0600 6.5231 -5.4440 15 1 8.1340 6.5119 -5.3305 16 6 6.4896 7.0342 -6.6017 17 7 5.1904 7.2362 -6.6615 18 14 7.5660 7.4352 -8.0748 19 1 7.6713 6.2407 -8.9507 20 1 6.9625 8.5571 -8.8380 21 1 8.9199 7.8266 -7.6067 22 6 4.9734 5.3991 -4.7608 23 6 4.9348 4.0119 -4.1118 24 6 5.9958 3.1172 -4.7558 25 6 3.5514 3.3907 -4.3150 26 6 6.1960 0.5606 -0.1105 27 6 5.8133 1.2131 1.2194 28 8 3.4538 -0.7253 -0.0045 29 7 2.2868 -1.0423 0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 2.0709 2.1743 -0.0005 34 1 5.3117 2.0267 -2.5123 35 1 6.8285 4.8089 -1.3430 36 1 7.3571 4.0915 -2.8846 37 1 7.6932 6.5151 -2.9841 38 1 6.0000 6.8008 -2.5060 39 1 4.7919 7.5937 -7.4703 40 1 4.8694 5.3001 -5.8413 41 1 4.1585 6.0083 -4.3696 42 1 5.9699 2.1312 -4.2919 43 1 5.7926 3.0227 -5.8226 44 1 6.9811 3.5607 -4.6119 45 1 2.7957 4.0289 -3.8571 46 1 3.3489 3.2953 -5.3818 47 1 3.5241 2.4049 -3.8507 48 1 7.0202 1.0035 -0.6697 49 1 6.1072 -0.5232 -0.1837 50 1 5.4727 0.5584 2.0215 51 1 6.3857 2.0853 1.5352 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940980391.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:31 Heat of formation + Delta-G solvation = 68.510106 kcal Electronic energy + Delta-G solvation = -32202.930188 eV Core-core repulsion = 28107.054229 eV Total energy + Delta-G solvation = -4095.875959 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.15155 -40.42690 -38.62091 -36.80087 -34.99963 -34.63513 -32.86224 -32.01659 -31.73174 -29.49519 -28.92663 -26.80250 -26.08095 -25.73681 -24.36036 -23.49451 -22.83547 -22.27961 -20.88204 -20.62552 -19.61129 -18.49699 -17.80155 -17.64130 -16.99557 -16.55544 -15.85297 -15.61041 -14.92596 -14.72179 -14.28047 -14.06352 -13.88681 -13.63725 -13.60681 -13.55997 -13.39076 -13.24858 -13.18185 -12.72750 -12.68328 -12.34840 -11.96759 -11.69962 -11.65839 -11.54110 -11.39537 -11.31072 -11.14242 -11.05968 -10.91294 -10.72386 -10.61284 -10.25159 -10.21271 -10.13978 -10.01066 -9.89098 -9.69958 -9.52465 -9.34156 -8.75151 -8.49774 -6.64585 -5.81640 -3.29633 1.15518 1.99435 2.22642 2.79798 3.24949 3.34482 3.41806 3.42345 3.42790 3.94435 3.97653 4.35781 4.45547 4.45812 4.59153 4.86360 4.99885 5.14348 5.20885 5.24077 5.25909 5.28417 5.29338 5.38215 5.47448 5.51640 5.53587 5.56117 5.59356 5.71071 5.81799 5.89497 5.90914 6.05703 6.06003 6.16316 6.27802 6.37205 6.41603 6.42879 6.60116 6.67232 6.78877 6.88165 6.94982 7.00806 7.30088 7.56045 7.66701 7.76753 8.02550 8.22619 8.44761 9.19270 9.80231 10.38639 11.26541 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018296 B = 0.002780 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.034948 B =10070.461252 C =10735.792974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.020 3.980 3 C -0.213 4.213 4 C 0.014 3.986 5 C -0.091 4.091 6 C 0.557 3.443 7 O -0.526 6.526 8 N -0.708 5.708 9 C 0.162 3.838 10 H 0.083 0.917 11 C -0.143 4.143 12 C 0.147 3.853 13 N -0.589 5.589 14 C -0.251 4.251 15 H 0.064 0.936 16 C 0.006 3.994 17 N -0.904 5.904 18 Si 0.903 3.097 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.188 3.812 23 C -0.097 4.097 24 C -0.127 4.127 25 C -0.134 4.134 26 C -0.153 4.153 27 C -0.126 4.126 28 O 0.101 5.899 29 N -0.365 5.365 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.173 0.827 34 H 0.398 0.602 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.020 0.980 39 H 0.254 0.746 40 H 0.094 0.906 41 H 0.019 0.981 42 H 0.029 0.971 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.050 0.950 46 H 0.056 0.944 47 H 0.041 0.959 48 H 0.113 0.887 49 H 0.113 0.887 50 H 0.108 0.892 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.353 -15.347 12.709 20.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.139 4.139 3 C -0.235 4.235 4 C -0.050 4.050 5 C -0.096 4.096 6 C 0.340 3.660 7 O -0.402 6.402 8 N -0.358 5.358 9 C 0.059 3.941 10 H 0.101 0.899 11 C -0.183 4.183 12 C 0.020 3.980 13 N -0.311 5.311 14 C -0.381 4.381 15 H 0.082 0.918 16 C -0.193 4.193 17 N -0.548 5.548 18 Si 0.733 3.267 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.204 1.204 22 C 0.061 3.939 23 C -0.100 4.100 24 C -0.184 4.184 25 C -0.192 4.192 26 C -0.190 4.190 27 C -0.164 4.164 28 O 0.035 5.965 29 N -0.071 5.071 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.190 0.810 34 H 0.234 0.766 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.038 0.962 39 H 0.064 0.936 40 H 0.112 0.888 41 H 0.037 0.963 42 H 0.048 0.952 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.060 0.940 48 H 0.132 0.868 49 H 0.131 0.869 50 H 0.127 0.873 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.860 -15.835 13.006 20.851 hybrid contribution 0.344 0.666 -1.073 1.309 sum -3.516 -15.169 11.932 19.617 Atomic orbital electron populations 1.20183 0.85755 1.03818 1.03597 1.23593 0.99130 0.88618 1.02519 1.22424 0.90839 1.01437 1.08774 1.22737 0.95447 0.83524 1.03261 1.19431 0.87507 0.95104 1.07545 1.18831 0.77236 0.87526 0.82449 1.90730 1.47375 1.37823 1.64285 1.46323 1.70159 1.10826 1.08516 1.21093 0.98168 0.82012 0.92845 0.89909 1.22465 0.96190 0.99981 0.99661 1.20881 0.98443 0.92228 0.86433 1.44003 1.20455 1.66658 0.99991 1.19149 0.89274 1.33832 0.95811 0.91818 1.25160 0.95905 0.98375 0.99854 1.69955 1.09518 1.47867 1.27491 0.86287 0.79866 0.77695 0.82865 1.21452 1.21718 1.20447 1.20831 0.86919 0.85611 1.00511 1.21588 0.94519 1.00834 0.93022 1.21747 1.00247 0.96412 1.00013 1.21761 0.96689 0.99289 1.01438 1.23274 0.94925 1.00276 1.00510 1.23144 0.98817 1.03418 0.90998 1.84785 1.21792 1.22033 1.67927 1.73841 0.89116 1.23800 1.20310 0.89968 0.90544 0.89849 0.80965 0.76638 0.92907 0.91720 0.92524 0.96241 0.93574 0.88778 0.96275 0.95224 0.92869 0.91077 0.93064 0.92540 0.93978 0.86830 0.86862 0.87325 0.86775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.47 36.00 0.38 -0.22 16 2 C 0.02 0.23 7.33 -82.10 -0.60 -0.38 16 3 C -0.21 -2.53 10.59 -39.38 -0.42 -2.95 16 4 C 0.01 0.16 6.77 -35.31 -0.24 -0.08 16 5 C -0.09 -0.98 2.38 -156.81 -0.37 -1.36 16 6 C 0.56 7.62 6.51 -10.99 -0.07 7.55 16 7 O -0.53 -9.10 16.73 5.56 0.09 -9.01 16 8 N -0.71 -9.42 4.28 -53.77 -0.23 -9.65 16 9 C 0.16 2.65 1.61 -67.89 -0.11 2.54 16 10 H 0.08 1.56 7.51 -51.93 -0.39 1.17 16 11 C -0.14 -2.42 5.31 -26.61 -0.14 -2.56 16 12 C 0.15 3.00 6.52 -3.71 -0.02 2.98 16 13 N -0.59 -13.88 2.42 -172.32 -0.42 -14.30 16 14 C -0.25 -6.54 9.58 -15.06 -0.14 -6.68 16 15 H 0.06 1.64 7.85 -52.49 -0.41 1.23 16 16 C 0.01 0.15 5.06 -17.43 -0.09 0.07 16 17 N -0.90 -25.29 11.05 55.49 0.61 -24.68 16 18 Si 0.90 21.08 29.57 -169.99 -5.03 16.05 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 C 0.19 4.19 3.93 -3.71 -0.01 4.17 16 23 C -0.10 -1.67 0.56 -154.39 -0.09 -1.75 16 24 C -0.13 -2.06 7.83 37.16 0.29 -1.76 16 25 C -0.13 -2.06 8.31 37.16 0.31 -1.75 16 26 C -0.15 -1.21 9.88 -26.73 -0.26 -1.48 16 27 C -0.13 -1.10 9.94 -26.73 -0.27 -1.36 16 28 O 0.10 1.21 10.97 17.17 0.19 1.39 16 29 N -0.37 -4.64 12.07 33.42 0.40 -4.23 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.17 2.03 8.06 -52.48 -0.42 1.60 16 34 H 0.40 4.63 6.66 -40.82 -0.27 4.36 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.07 6.34 -51.93 -0.33 0.74 16 37 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.09 2.37 6.11 -51.93 -0.32 2.06 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.03 0.38 6.58 -51.93 -0.34 0.04 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.07 1.28 5.97 -51.93 -0.31 0.97 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.04 0.57 7.36 -51.93 -0.38 0.19 16 48 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.11 0.77 8.00 -51.93 -0.42 0.35 16 50 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 51 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 405.36 15.07 6.11 6.11 Total: -1.00 -30.22 405.36 -8.34 -38.57 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -8.21 Total: 4.79 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -1.86 Total: -5.03 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.37 Total: -52.86 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.28 Total: -7.62 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.22 -8.34 -38.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940980391.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.076 kcal (2) G-P(sol) polarization free energy of solvation -30.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds