Wall clock time and date at job start Wed Apr 1 2020 04:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.41382 * 126.80261 * 2 1 4 4 C 1.35441 * 103.98655 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.77551 * 179.97438 * 4 3 2 6 6 C 1.50695 * 115.56213 * 330.41219 * 5 4 3 7 7 O 1.21278 * 120.00199 * 89.43242 * 6 5 4 8 8 N 1.34777 * 119.99859 * 269.42488 * 6 5 4 9 9 C 1.46496 * 120.00094 * 184.89125 * 8 6 5 10 10 H 1.09003 * 109.46450 * 324.97536 * 9 8 6 11 11 C 1.53040 * 109.45878 * 84.93650 * 9 8 6 12 12 C 1.53194 * 109.31316 * 181.38324 * 11 9 8 13 13 N 1.46921 * 108.77802 * 305.36919 * 12 11 9 14 14 C 1.36945 * 120.62893 * 233.58474 * 13 12 11 15 15 H 1.07999 * 119.99969 * 31.60866 * 14 13 12 16 16 C 1.38812 * 119.99763 * 211.60657 * 14 13 12 17 17 N 1.31621 * 120.00265 * 10.28888 * 16 14 13 18 18 Si 1.86803 * 119.99844 * 190.29595 * 16 14 13 19 19 H 1.48498 * 109.47337 * 89.99372 * 18 16 14 20 20 H 1.48495 * 109.46964 * 209.99885 * 18 16 14 21 21 H 1.48510 * 109.46891 * 329.99644 * 18 16 14 22 22 C 1.46925 * 118.74233 * 53.60281 * 13 12 11 23 23 C 1.53038 * 109.46053 * 205.00410 * 9 8 6 24 24 C 1.52997 * 109.49792 * 298.56596 * 23 9 8 25 25 C 1.52997 * 109.49905 * 58.63366 * 23 9 8 26 26 C 1.53000 * 117.49772 * 184.71757 * 5 4 3 27 27 C 1.53000 * 60.00268 * 252.51170 * 26 5 4 28 28 O 1.34044 * 106.45015 * 0.23853 * 4 3 2 29 29 N 1.20921 * 111.56050 * 359.56992 * 28 4 3 30 30 H 1.08999 * 109.47341 * 90.00162 * 1 2 3 31 31 H 1.08997 * 109.47351 * 209.99680 * 1 2 3 32 32 H 1.08995 * 109.47548 * 330.00243 * 1 2 3 33 33 H 1.08003 * 128.00187 * 359.96455 * 3 2 1 34 34 H 0.97004 * 120.00077 * 4.89973 * 8 6 5 35 35 H 1.09001 * 109.49794 * 301.33590 * 11 9 8 36 36 H 1.09002 * 109.49769 * 61.43641 * 11 9 8 37 37 H 1.08993 * 109.59038 * 185.57365 * 12 11 9 38 38 H 1.09003 * 109.58392 * 65.15186 * 12 11 9 39 39 H 0.96995 * 119.99859 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.58939 * 186.60590 * 22 13 12 41 41 H 1.09002 * 109.69971 * 66.25334 * 22 13 12 42 42 H 1.09003 * 109.47278 * 60.00424 * 24 23 9 43 43 H 1.09007 * 109.46886 * 180.02562 * 24 23 9 44 44 H 1.08997 * 109.47409 * 300.00059 * 24 23 9 45 45 H 1.08999 * 109.47773 * 59.99654 * 25 23 9 46 46 H 1.09004 * 109.47690 * 180.02562 * 25 23 9 47 47 H 1.09002 * 109.47109 * 299.99989 * 25 23 9 48 48 H 1.09001 * 117.50083 * 145.02358 * 26 5 4 49 49 H 1.08997 * 117.50123 * 0.02562 * 26 5 4 50 50 H 1.08998 * 117.49465 * 107.48647 * 27 26 5 51 51 H 1.08997 * 117.50126 * 252.51254 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6068 0.0006 5 6 4.9021 1.3696 0.0003 6 6 4.8646 2.7179 -0.6719 7 8 4.5768 3.7069 -0.0316 8 7 5.1511 2.8246 -1.9845 9 6 5.2198 4.1455 -2.6142 10 1 4.4782 4.8031 -2.1607 11 6 6.6170 4.7357 -2.4098 12 6 6.6747 6.1311 -3.0394 13 7 6.2609 6.0328 -4.4457 14 6 7.0600 6.5231 -5.4440 15 1 8.1340 6.5119 -5.3305 16 6 6.4896 7.0342 -6.6017 17 7 5.1904 7.2362 -6.6615 18 14 7.5660 7.4352 -8.0748 19 1 7.6713 6.2407 -8.9507 20 1 6.9625 8.5571 -8.8380 21 1 8.9199 7.8266 -7.6067 22 6 4.9734 5.3991 -4.7608 23 6 4.9348 4.0119 -4.1118 24 6 5.9958 3.1172 -4.7558 25 6 3.5514 3.3907 -4.3150 26 6 6.1960 0.5606 -0.1105 27 6 5.8133 1.2131 1.2194 28 8 3.4538 -0.7253 -0.0045 29 7 2.2868 -1.0423 0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 2.0709 2.1743 -0.0005 34 1 5.3117 2.0267 -2.5123 35 1 6.8285 4.8089 -1.3430 36 1 7.3571 4.0915 -2.8846 37 1 7.6932 6.5151 -2.9841 38 1 6.0000 6.8008 -2.5060 39 1 4.7919 7.5937 -7.4703 40 1 4.8694 5.3001 -5.8413 41 1 4.1585 6.0083 -4.3696 42 1 5.9699 2.1312 -4.2919 43 1 5.7926 3.0227 -5.8226 44 1 6.9811 3.5607 -4.6119 45 1 2.7957 4.0289 -3.8571 46 1 3.3489 3.2953 -5.3818 47 1 3.5241 2.4049 -3.8507 48 1 7.0202 1.0035 -0.6697 49 1 6.1072 -0.5232 -0.1837 50 1 5.4727 0.5584 2.0215 51 1 6.3857 2.0853 1.5352 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940980391.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:30 Heat of formation + Delta-G solvation = 52.175657 kcal Electronic energy + Delta-G solvation = -32203.638503 eV Core-core repulsion = 28107.054229 eV Total energy + Delta-G solvation = -4096.584274 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -46.02567 -41.60677 -39.95284 -37.77891 -36.27303 -35.81569 -34.25664 -33.79583 -32.57705 -31.18716 -29.64168 -28.14905 -27.61217 -27.28738 -25.63354 -24.40411 -23.91150 -23.30952 -22.29090 -21.98266 -20.63502 -19.68903 -19.05976 -18.68259 -18.41945 -17.69927 -17.13270 -16.75821 -16.56859 -15.79923 -15.59879 -15.53337 -15.14310 -15.05240 -14.84974 -14.72198 -14.33202 -14.24598 -14.23850 -13.98137 -13.84645 -13.44915 -13.24764 -13.02081 -12.89420 -12.73351 -12.65020 -12.59485 -12.46668 -12.38881 -12.32149 -12.16383 -11.96199 -11.87031 -11.82351 -11.62118 -11.32733 -11.16404 -11.02834 -10.87864 -10.52799 -10.24922 -10.02065 -8.60187 -7.84011 -5.34874 0.29159 1.13726 1.22454 1.48636 1.49686 1.58082 1.78389 2.31432 2.52277 2.59975 3.17680 3.18827 3.32274 3.50250 3.66381 3.69903 3.74384 3.82820 3.99161 4.02816 4.11505 4.20500 4.36001 4.45776 4.48175 4.57320 4.62054 4.64689 4.67183 4.67903 4.79116 4.80298 4.83192 4.86249 4.92237 4.96605 4.98756 5.05024 5.10777 5.11443 5.18015 5.25514 5.32659 5.35168 5.43778 5.52900 5.64296 5.71613 5.77803 6.43907 6.49789 7.14054 7.16710 7.18845 7.86914 8.40970 9.21905 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018296 B = 0.002780 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.034948 B =10070.461252 C =10735.792974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.019 3.981 3 C -0.232 4.232 4 C 0.020 3.980 5 C -0.109 4.109 6 C 0.562 3.438 7 O -0.565 6.565 8 N -0.696 5.696 9 C 0.175 3.825 10 H 0.055 0.945 11 C -0.128 4.128 12 C 0.144 3.856 13 N -0.603 5.603 14 C -0.255 4.255 15 H 0.067 0.933 16 C -0.046 4.046 17 N -0.936 5.936 18 Si 0.965 3.035 19 H -0.283 1.283 20 H -0.299 1.299 21 H -0.270 1.270 22 C 0.198 3.802 23 C -0.087 4.087 24 C -0.120 4.120 25 C -0.128 4.128 26 C -0.129 4.129 27 C -0.122 4.122 28 O 0.101 5.899 29 N -0.387 5.387 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.168 0.832 34 H 0.411 0.589 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.003 0.997 39 H 0.249 0.751 40 H 0.062 0.938 41 H -0.016 1.016 42 H 0.069 0.931 43 H 0.042 0.958 44 H 0.055 0.945 45 H 0.041 0.959 46 H 0.054 0.946 47 H 0.068 0.932 48 H 0.125 0.875 49 H 0.130 0.870 50 H 0.121 0.879 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.181 -17.960 13.457 22.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.139 4.139 3 C -0.254 4.254 4 C -0.044 4.044 5 C -0.113 4.113 6 C 0.347 3.653 7 O -0.443 6.443 8 N -0.347 5.347 9 C 0.070 3.930 10 H 0.073 0.927 11 C -0.167 4.167 12 C 0.017 3.983 13 N -0.325 5.325 14 C -0.385 4.385 15 H 0.085 0.915 16 C -0.242 4.242 17 N -0.582 5.582 18 Si 0.793 3.207 19 H -0.210 1.210 20 H -0.226 1.226 21 H -0.194 1.194 22 C 0.072 3.928 23 C -0.090 4.090 24 C -0.177 4.177 25 C -0.186 4.186 26 C -0.166 4.166 27 C -0.159 4.159 28 O 0.036 5.964 29 N -0.094 5.094 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.185 0.815 34 H 0.249 0.751 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.021 0.979 39 H 0.058 0.942 40 H 0.081 0.919 41 H 0.002 0.998 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.087 0.913 48 H 0.144 0.856 49 H 0.149 0.851 50 H 0.140 0.860 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.662 -18.491 13.771 23.209 hybrid contribution -0.041 1.540 -1.232 1.973 sum -2.703 -16.951 12.539 21.257 Atomic orbital electron populations 1.20337 0.83712 1.04904 1.04525 1.24064 1.00519 0.88017 1.01279 1.22515 0.91498 1.01475 1.09886 1.22829 0.95620 0.83537 1.02419 1.19235 0.88521 0.93959 1.09605 1.19221 0.75828 0.88293 0.81998 1.90719 1.48853 1.39673 1.65070 1.46048 1.70097 1.09849 1.08701 1.20660 0.97020 0.83221 0.92056 0.92676 1.22264 0.96826 0.97770 0.99883 1.20976 0.98006 0.94364 0.84917 1.44213 1.20414 1.67023 1.00891 1.19454 0.89757 1.32932 0.96365 0.91531 1.25866 0.96943 0.98964 1.02413 1.70132 1.11065 1.49242 1.27768 0.85306 0.78563 0.77082 0.79712 1.21009 1.22558 1.19431 1.20566 0.85464 0.88027 0.98767 1.21345 0.96370 0.97949 0.93290 1.21665 0.98525 0.97885 0.99618 1.21707 0.95077 1.00229 1.01591 1.23457 0.92799 1.00959 0.99347 1.23285 0.97581 1.03707 0.91359 1.84761 1.21638 1.21921 1.68057 1.73827 0.89497 1.24402 1.21625 0.89015 0.89725 0.88521 0.81460 0.75118 0.91896 0.90417 0.92216 0.97869 0.94210 0.91932 0.99786 0.91216 0.93932 0.92627 0.94008 0.92678 0.91287 0.85645 0.85136 0.86038 0.86893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.47 71.24 0.75 -0.35 16 2 C 0.02 0.41 7.33 43.58 0.32 0.73 16 3 C -0.23 -5.25 10.59 22.40 0.24 -5.02 16 4 C 0.02 0.42 6.77 25.04 0.17 0.59 16 5 C -0.11 -2.07 2.38 -53.67 -0.13 -2.19 16 6 C 0.56 14.40 6.51 87.66 0.57 14.97 16 7 O -0.56 -19.22 16.73 -3.02 -0.05 -19.27 16 8 N -0.70 -16.97 4.28 -442.42 -1.89 -18.87 16 9 C 0.17 5.59 1.61 45.02 0.07 5.66 16 10 H 0.06 2.11 7.51 -2.39 -0.02 2.09 16 11 C -0.13 -4.18 5.31 30.67 0.16 -4.02 16 12 C 0.14 5.93 6.52 86.36 0.56 6.49 16 13 N -0.60 -29.06 2.42 -699.09 -1.69 -30.75 16 14 C -0.25 -13.45 9.58 84.03 0.81 -12.64 16 15 H 0.07 3.42 7.85 -2.91 -0.02 3.40 16 16 C -0.05 -2.52 5.06 84.86 0.43 -2.09 16 17 N -0.94 -54.27 11.05 21.65 0.24 -54.03 16 18 Si 0.96 43.84 29.57 68.60 2.03 45.87 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 21 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 22 C 0.20 9.18 3.93 86.36 0.34 9.52 16 23 C -0.09 -2.96 0.56 -52.11 -0.03 -2.99 16 24 C -0.12 -3.65 7.83 71.98 0.56 -3.08 16 25 C -0.13 -3.84 8.31 71.98 0.60 -3.24 16 26 C -0.13 -1.55 9.88 30.59 0.30 -1.24 16 27 C -0.12 -1.77 9.94 30.60 0.30 -1.46 16 28 O 0.10 2.19 10.97 71.59 0.79 2.98 16 29 N -0.39 -9.17 12.07 -49.55 -0.60 -9.77 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 32 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.17 3.89 8.06 -2.91 -0.02 3.87 16 34 H 0.41 8.05 6.66 -92.71 -0.62 7.43 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.08 2.39 6.34 -2.39 -0.02 2.37 16 37 H 0.06 2.39 7.93 -2.39 -0.02 2.37 16 38 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 40 H 0.06 3.30 6.11 -2.39 -0.01 3.28 16 41 H -0.02 -0.83 8.14 -2.39 -0.02 -0.85 16 42 H 0.07 1.55 6.58 -2.39 -0.02 1.54 16 43 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 44 H 0.05 1.89 5.97 -2.39 -0.01 1.87 16 45 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.07 1.69 7.36 -2.39 -0.02 1.68 16 48 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.13 1.19 8.00 -2.39 -0.02 1.17 16 50 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 51 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -67.92 405.36 5.16 -62.76 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.32 Total: 21.45 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 6.03 Total: -0.38 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -3.95 Total: -113.42 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.73 Total: -16.29 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -67.92 5.16 -62.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940980391.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.934 kcal (2) G-P(sol) polarization free energy of solvation -67.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds