Wall clock time and date at job start Wed Apr 1 2020 05:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35675 * 116.99617 * 2 1 4 4 C 1.38919 * 119.68194 * 180.02562 * 3 2 1 5 5 C 1.38374 * 119.11327 * 179.97438 * 4 3 2 6 6 C 1.50707 * 120.75868 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47188 * 89.99968 * 6 5 4 8 8 O 1.21276 * 119.99496 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99783 * 179.97438 * 7 6 5 10 10 C 1.46496 * 119.99889 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46345 * 325.03065 * 10 9 7 12 12 C 1.53043 * 109.46151 * 85.00320 * 10 9 7 13 13 C 1.53193 * 109.31631 * 181.37397 * 12 10 9 14 14 N 1.46922 * 108.77392 * 305.36337 * 13 12 10 15 15 C 1.36936 * 120.63062 * 233.58842 * 14 13 12 16 16 H 1.08003 * 119.99873 * 152.06407 * 15 14 13 17 17 C 1.38809 * 119.99934 * 332.05661 * 15 14 13 18 18 N 1.31614 * 120.00117 * 335.34582 * 17 15 14 19 19 Si 1.86802 * 120.00012 * 155.34144 * 17 15 14 20 20 H 1.48498 * 109.47091 * 180.02562 * 19 17 15 21 21 H 1.48497 * 109.46992 * 300.00362 * 19 17 15 22 22 H 1.48502 * 109.47080 * 60.00224 * 19 17 15 23 23 C 1.46928 * 118.74048 * 53.85863 * 14 13 12 24 24 C 1.53044 * 109.45260 * 205.06377 * 10 9 7 25 25 C 1.53005 * 109.49622 * 298.57514 * 24 10 9 26 26 C 1.52999 * 109.49327 * 58.66808 * 24 10 9 27 27 C 1.38834 * 118.48469 * 0.27357 * 5 4 3 28 28 C 1.38043 * 119.28513 * 359.45253 * 27 5 4 29 29 N 1.31962 * 120.83605 * 0.56506 * 28 27 5 30 30 H 1.08995 * 109.47532 * 300.00222 * 1 2 3 31 31 H 1.09007 * 109.47230 * 60.00290 * 1 2 3 32 32 H 1.09003 * 109.47156 * 180.02562 * 1 2 3 33 33 H 1.08003 * 120.44642 * 359.95302 * 4 3 2 34 34 H 1.08995 * 109.47059 * 329.99687 * 6 5 4 35 35 H 1.09007 * 109.47135 * 210.00211 * 6 5 4 36 36 H 0.97000 * 120.00154 * 0.02562 * 9 7 6 37 37 H 1.09003 * 109.49630 * 61.41267 * 12 10 9 38 38 H 1.09005 * 109.52220 * 301.34361 * 12 10 9 39 39 H 1.08995 * 109.58272 * 185.57539 * 13 12 10 40 40 H 1.09001 * 109.58567 * 65.15119 * 13 12 10 41 41 H 0.97010 * 120.00165 * 354.24304 * 18 17 15 42 42 H 1.09002 * 109.58347 * 65.92560 * 23 14 13 43 43 H 1.08999 * 109.58910 * 186.35017 * 23 14 13 44 44 H 1.09003 * 109.47019 * 59.99509 * 25 24 10 45 45 H 1.08996 * 109.46994 * 180.02562 * 25 24 10 46 46 H 1.09001 * 109.46918 * 299.99901 * 25 24 10 47 47 H 1.09002 * 109.46798 * 60.00793 * 26 24 10 48 48 H 1.09006 * 109.46687 * 180.02562 * 26 24 10 49 49 H 1.08995 * 109.47509 * 300.00030 * 26 24 10 50 50 H 1.08000 * 120.35394 * 179.70171 * 27 5 4 51 51 H 1.08009 * 119.57854 * 180.27338 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0484 2.5131 -0.0011 6 6 5.5512 2.6270 -0.0022 7 6 6.0510 2.6648 -1.4235 8 8 5.2643 2.6057 -2.3446 9 7 7.3720 2.7654 -1.6707 10 6 7.8580 2.8016 -3.0522 11 1 7.2313 2.1628 -3.6745 12 6 7.7996 4.2386 -3.5757 13 6 8.2760 4.2673 -5.0314 14 7 9.6081 3.6518 -5.1053 15 6 10.6544 4.3202 -5.6829 16 1 11.6663 4.1179 -5.3642 17 6 10.4145 5.2577 -6.6781 18 7 9.3191 5.1814 -7.4038 19 14 11.6462 6.6276 -6.9873 20 1 11.1599 7.4900 -8.0941 21 1 11.7992 7.4430 -5.7557 22 1 12.9584 6.0392 -7.3576 23 6 9.7948 2.3032 -4.5530 24 6 9.3027 2.2987 -3.0977 25 6 10.1894 3.2153 -2.2523 26 6 9.3649 0.8739 -2.5436 27 6 3.2504 3.6492 0.0048 28 6 1.8770 3.5097 -0.0006 29 7 1.3186 2.3140 0.0000 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 4.0229 0.3696 -0.0002 34 1 5.9811 1.7670 0.5113 35 1 5.8467 3.5419 0.5114 36 1 8.0011 2.8130 -0.9339 37 1 8.4454 4.8733 -2.9689 38 1 6.7744 4.6048 -3.5211 39 1 8.3306 5.2993 -5.3777 40 1 7.5794 3.7068 -5.6550 41 1 8.7209 4.4247 -7.3010 42 1 9.2195 1.5858 -5.1383 43 1 10.8518 2.0389 -4.5836 44 1 9.8361 3.2124 -1.2212 45 1 11.2182 2.8570 -2.2854 46 1 10.1454 4.2297 -2.6487 47 1 8.7342 0.2214 -3.1474 48 1 10.3942 0.5163 -2.5758 49 1 9.0111 0.8691 -1.5127 50 1 3.6993 4.6315 0.0094 51 1 1.2517 4.3903 -0.0006 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941031874.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:29 Heat of formation + Delta-G solvation = -23.107184 kcal Electronic energy + Delta-G solvation = -31221.384029 eV Core-core repulsion = 27121.535246 eV Total energy + Delta-G solvation = -4099.848783 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.92820 -40.06743 -38.52507 -37.85009 -34.91216 -33.95423 -33.22577 -31.43316 -30.94459 -30.09095 -28.70101 -27.30427 -26.99412 -25.80018 -24.86233 -23.65657 -22.80133 -21.91061 -20.66956 -20.24664 -18.52652 -17.92525 -17.46575 -17.31698 -16.90193 -16.19093 -16.16077 -15.77453 -15.23749 -14.58613 -14.42664 -14.37812 -14.30524 -14.02840 -13.74453 -13.62873 -13.47833 -13.40441 -13.07247 -12.75023 -12.60133 -12.36885 -12.16378 -12.03229 -11.80009 -11.62032 -11.42023 -11.35062 -11.00402 -10.93233 -10.75310 -10.60202 -10.36087 -10.12473 -10.09824 -9.96181 -9.89245 -9.86552 -9.58536 -9.26933 -8.74645 -8.68742 -8.35877 -6.88622 -6.06231 -3.23598 0.96530 1.05965 2.68536 2.86160 3.24315 3.48771 3.51678 3.66867 3.70093 4.10127 4.31013 4.58389 4.66083 4.82412 4.88668 4.92185 5.01055 5.03057 5.07212 5.12521 5.16933 5.19515 5.24967 5.35332 5.38774 5.49993 5.53305 5.68300 5.72967 5.77636 5.85142 5.96737 6.04909 6.08349 6.15995 6.19648 6.22305 6.30512 6.39558 6.42419 6.52740 6.67548 6.70167 6.80716 6.86567 7.02928 7.07493 7.20160 7.61504 7.65798 7.99667 8.31511 8.57421 9.10927 9.84344 10.28866 11.22088 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018431 B = 0.002291 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.820650 B =12219.050810 C =12760.414446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.310 6.310 3 C 0.320 3.680 4 C -0.176 4.176 5 C 0.016 3.984 6 C -0.107 4.107 7 C 0.512 3.488 8 O -0.531 6.531 9 N -0.721 5.721 10 C 0.165 3.835 11 H 0.080 0.920 12 C -0.144 4.144 13 C 0.153 3.847 14 N -0.595 5.595 15 C -0.348 4.348 16 H 0.056 0.944 17 C -0.024 4.024 18 N -0.915 5.915 19 Si 1.063 2.937 20 H -0.286 1.286 21 H -0.294 1.294 22 H -0.293 1.293 23 C 0.161 3.839 24 C -0.089 4.089 25 C -0.130 4.130 26 C -0.136 4.136 27 C -0.195 4.195 28 C 0.139 3.861 29 N -0.543 5.543 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.139 0.861 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.396 0.604 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.018 0.982 41 H 0.270 0.730 42 H 0.017 0.983 43 H 0.059 0.941 44 H 0.035 0.965 45 H 0.050 0.950 46 H 0.075 0.925 47 H 0.051 0.949 48 H 0.054 0.946 49 H 0.047 0.953 50 H 0.136 0.864 51 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.334 -7.053 20.307 23.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.217 6.217 3 C 0.141 3.859 4 C -0.197 4.197 5 C 0.008 3.992 6 C -0.147 4.147 7 C 0.297 3.703 8 O -0.407 6.407 9 N -0.372 5.372 10 C 0.061 3.939 11 H 0.098 0.902 12 C -0.184 4.184 13 C 0.027 3.973 14 N -0.318 5.318 15 C -0.477 4.477 16 H 0.074 0.926 17 C -0.227 4.227 18 N -0.555 5.555 19 Si 0.893 3.107 20 H -0.211 1.211 21 H -0.221 1.221 22 H -0.220 1.220 23 C 0.034 3.966 24 C -0.091 4.091 25 C -0.188 4.188 26 C -0.194 4.194 27 C -0.215 4.215 28 C -0.016 4.016 29 N -0.267 5.267 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.156 0.844 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.230 0.770 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.036 0.964 41 H 0.081 0.919 42 H 0.035 0.965 43 H 0.078 0.922 44 H 0.054 0.946 45 H 0.069 0.931 46 H 0.094 0.906 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.066 0.934 50 H 0.154 0.846 51 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.395 -6.062 18.705 22.726 hybrid contribution 0.688 -1.241 1.255 1.894 sum -10.706 -7.303 19.959 23.798 Atomic orbital electron populations 1.22839 0.77302 1.02829 1.02423 1.86232 1.22869 1.24644 1.87952 1.19724 0.89192 0.84682 0.92314 1.20833 0.92058 0.98875 1.07888 1.19440 0.94530 0.92356 0.92882 1.20739 0.91953 1.05758 0.96235 1.20252 0.82763 0.76835 0.90468 1.90760 1.55030 1.48831 1.46079 1.46291 1.06708 1.74409 1.09793 1.20963 0.94194 0.97856 0.80861 0.90214 1.22499 1.00274 0.95327 1.00314 1.20922 0.85953 0.99372 0.91091 1.44123 1.07288 1.12187 1.68245 1.19925 0.87706 1.22757 1.17341 0.92627 1.25832 1.01788 1.02768 0.92272 1.70776 1.14844 1.33604 1.36283 0.83546 0.74717 0.76455 0.75950 1.21145 1.22108 1.22032 1.20997 0.98609 0.87905 0.89112 1.21422 0.93868 0.94442 0.99387 1.21775 0.98590 1.01550 0.96845 1.21803 1.01424 0.96182 1.00022 1.21841 0.94802 0.99303 1.05556 1.22322 0.92683 0.93581 0.92981 1.67274 1.41010 0.98872 1.19532 0.92403 0.92276 0.88718 0.84357 0.87495 0.87282 0.76958 0.91838 0.92773 0.90011 0.96441 0.91929 0.96466 0.92213 0.94643 0.93088 0.90604 0.92987 0.92677 0.93351 0.84562 0.82306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.38 101.05 1.05 1.40 16 2 O -0.31 -3.68 10.48 -18.73 -0.20 -3.88 16 3 C 0.32 4.06 7.49 -17.12 -0.13 3.93 16 4 C -0.18 -2.08 9.75 -39.28 -0.38 -2.46 16 5 C 0.02 0.18 4.41 -104.35 -0.46 -0.28 16 6 C -0.11 -0.95 5.88 -29.03 -0.17 -1.12 16 7 C 0.51 6.81 7.79 -10.99 -0.09 6.72 16 8 O -0.53 -9.63 15.70 5.56 0.09 -9.54 16 9 N -0.72 -9.10 4.29 -53.77 -0.23 -9.34 16 10 C 0.16 2.70 1.57 -67.89 -0.11 2.60 16 11 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 12 C -0.14 -2.73 5.31 -26.61 -0.14 -2.87 16 13 C 0.15 3.57 4.68 -3.71 -0.02 3.55 16 14 N -0.60 -14.27 2.28 -172.06 -0.39 -14.66 16 15 C -0.35 -9.36 9.49 -15.06 -0.14 -9.51 16 16 H 0.06 1.50 7.94 -52.48 -0.42 1.08 16 17 C -0.02 -0.68 4.69 -17.43 -0.08 -0.76 16 18 N -0.92 -27.27 12.41 55.49 0.69 -26.58 16 19 Si 1.06 24.88 29.99 -169.99 -5.10 19.79 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.16 3.23 5.24 -3.49 -0.02 3.21 16 24 C -0.09 -1.39 0.56 -154.16 -0.09 -1.48 16 25 C -0.13 -1.94 7.84 37.16 0.29 -1.64 16 26 C -0.14 -1.76 8.31 37.16 0.31 -1.45 16 27 C -0.19 -2.02 9.81 -39.43 -0.39 -2.41 16 28 C 0.14 1.47 11.17 -17.57 -0.20 1.27 16 29 N -0.54 -6.71 9.22 -13.33 -0.12 -6.83 16 30 H 0.06 0.47 8.10 -51.93 -0.42 0.04 16 31 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 34 H 0.11 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.11 0.70 8.10 -51.92 -0.42 0.28 16 36 H 0.40 3.89 6.66 -40.82 -0.27 3.62 16 37 H 0.06 1.19 6.34 -51.93 -0.33 0.86 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.08 2.15 6.31 -51.93 -0.33 1.82 16 40 H 0.02 0.43 7.86 -51.93 -0.41 0.02 16 41 H 0.27 8.14 6.69 -40.82 -0.27 7.87 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 44 H 0.03 0.41 6.58 -51.93 -0.34 0.07 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.08 1.36 5.97 -51.93 -0.31 1.05 16 47 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.05 0.53 7.36 -51.93 -0.38 0.15 16 50 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 51 H 0.16 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 402.68 15.07 6.07 6.07 Total: -1.00 -33.82 402.68 -8.10 -41.92 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -8.15 Total: 4.35 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -0.76 Total: -1.29 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -0.06 Total: -57.40 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.11 Total: -13.42 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.10 Total: 19.79 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.82 -8.10 -41.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941031874.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.812 kcal (2) G-P(sol) polarization free energy of solvation -33.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds